Zfp143 (zinc finger protein 143) - Rat Genome Database

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Gene: Zfp143 (zinc finger protein 143) Mus musculus
Analyze
Symbol: Zfp143
Name: zinc finger protein 143
RGD ID: 1313825
MGI Page MGI
Description: Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of smooth muscle cell proliferation and positive regulation of snRNA transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PcG protein complex and transcription regulator complex. Is expressed in central nervous system; early conceptus; and genitourinary system. Orthologous to human ZNF143 (zinc finger protein 143).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA959806; AU015869; D7Ertd805; D7Ertd805e; KRAB; KRAB14; mStaf; pHZ-; pHZ-1; SBF; selenocysteine tRNA gene transcription activating factor; selenocysteine tRNA gene transcription-activating factor; St; Staf; zfp-143; Zfp7; Zfp79; Zfp80-; Zfp80-rs1; zinc finger protein 80, related sequence 1; Znf143
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,660,898 - 109,694,603 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7109,660,424 - 109,694,601 (+)EnsemblGRCm39 Ensembl
GRCm387110,061,689 - 110,095,396 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7110,061,217 - 110,095,394 (+)EnsemblGRCm38mm10GRCm38
MGSCv377117,205,216 - 117,238,906 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367109,852,933 - 109,886,404 (+)NCBIMGSCv36mm8
Celera7110,035,478 - 110,069,160 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
infertility  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Emergence of the ZNF91 Kruppel-associated box-containing zinc finger gene family in the last common ancestor of anthropoidea. Bellefroid EJ, etal., Proc Natl Acad Sci U S A 1995 Nov 7;92(23):10757-61.
2. Cell growth- and differentiation-dependent regulation of RNA polymerase III transcription. Dumay-Odelot H, etal., Cell Cycle. 2010 Sep 15;9(18):3687-99. Epub 2010 Sep 1.
3. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
4. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
5. Chromosomal location of fifteen unique mouse KRAB-containing zinc finger loci. Marine JC, etal., Mamm Genome 1996 Jun;7(6):413-6.
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. MGD IEA MGD IEA
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. Mouse MP Annotation Import Pipeline RGD automated import pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2542606   PMID:9535833   PMID:9927285   PMID:10349636   PMID:10657238   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11528126   PMID:11528127   PMID:12477932  
PMID:12520002   PMID:12904583   PMID:14610273   PMID:14667815   PMID:14691545   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16325481   PMID:17609113   PMID:17967808   PMID:18287559  
PMID:18687992   PMID:18799693   PMID:18973473   PMID:19641492   PMID:20059953   PMID:20362541   PMID:20412781   PMID:21267068   PMID:21873635   PMID:23408857   PMID:26206133   PMID:26584622  
PMID:30550785   PMID:33397967   PMID:35013307   PMID:37566742  


Genomics

Comparative Map Data
Zfp143
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397109,660,898 - 109,694,603 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7109,660,424 - 109,694,601 (+)EnsemblGRCm39 Ensembl
GRCm387110,061,689 - 110,095,396 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7110,061,217 - 110,095,394 (+)EnsemblGRCm38mm10GRCm38
MGSCv377117,205,216 - 117,238,906 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367109,852,933 - 109,886,404 (+)NCBIMGSCv36mm8
Celera7110,035,478 - 110,069,160 (+)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.7NCBI
ZNF143
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38119,461,012 - 9,528,524 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl119,460,319 - 9,528,524 (+)EnsemblGRCh38hg38GRCh38
GRCh37119,482,559 - 9,550,071 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36119,439,089 - 9,506,647 (+)NCBINCBI36Build 36hg18NCBI36
Build 34119,439,088 - 9,506,188NCBI
Celera119,604,193 - 9,671,660 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef119,153,846 - 9,221,472 (+)NCBIHuRef
CHM1_1119,481,437 - 9,549,032 (+)NCBICHM1_1
T2T-CHM13v2.0119,546,141 - 9,612,748 (+)NCBIT2T-CHM13v2.0
Zfp143
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81173,543,810 - 173,579,667 (+)NCBIGRCr8
mRatBN7.21164,109,041 - 164,144,902 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1164,109,116 - 164,144,902 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1172,445,384 - 172,481,352 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01179,631,385 - 179,667,355 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01172,313,587 - 172,349,560 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01174,702,310 - 174,738,133 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1174,702,373 - 174,738,126 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01181,702,228 - 181,738,051 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41167,704,313 - 167,740,073NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1162,007,136 - 162,042,883 (+)NCBICelera
Cytogenetic Map1q33NCBI
Znf143
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541425,221,440 - 25,255,175 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541425,220,574 - 25,252,962 (+)NCBIChiLan1.0ChiLan1.0
ZNF143
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2911,903,677 - 11,967,867 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11111,862,319 - 11,926,544 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0119,597,377 - 9,661,744 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1119,331,199 - 9,392,754 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl119,331,199 - 9,392,754 (+)Ensemblpanpan1.1panPan2
ZNF143
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12132,757,764 - 32,817,241 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2132,775,394 - 32,817,243 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2132,325,498 - 32,385,206 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02133,636,440 - 33,696,380 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2133,636,448 - 33,696,377 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12132,900,150 - 32,959,597 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02133,066,531 - 33,126,195 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02133,360,300 - 33,420,050 (+)NCBIUU_Cfam_GSD_1.0
Znf143
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494752,580,413 - 52,642,321 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365288,614,180 - 8,676,293 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365288,614,393 - 8,676,301 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF143
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl945,187 - 104,736 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1945,164 - 104,776 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2956,453 - 114,985 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF143
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,289,081 - 55,347,413 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl155,289,123 - 55,347,264 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038152,971,945 - 153,035,277 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf143
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247661,604,783 - 1,662,595 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247661,604,118 - 1,662,843 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfp143
1125 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:584
Count of miRNA genes:234
Interacting mature miRNAs:258
Transcripts:ENSMUST00000084727, ENSMUST00000169638
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
25394573Skmw62_mskeletal muscle weight 62, gastroc (mouse)7106893715110612309Mouse
13524524Bodwtq6_mbody wweight QTL 6 (mouse)7107245693113055693Mouse
4141056Lskcn2_mLSK cell number 2 (mouse)Not determined108482996118693530Mouse
35673311Ari6_mantibody response to influenza 6, day 15, IgG2b (mouse)7108699207115099235Mouse
25394557Skmw64_mskeletal muscle weight 64, soleus (mouse)7108715780114592736Mouse
25394559Skmw63_mskeletal muscle weight 63, TA (mouse)7108791458110612309Mouse
25394556Skmw65_mskeletal muscle weight 65, EDL (mouse)7109059337110612309Mouse

Markers in Region
AF011758  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387110,094,406 - 110,094,489UniSTSGRCm38
MGSCv377117,237,920 - 117,238,003UniSTSGRCm37
Celera7110,068,174 - 110,068,257UniSTS
Cytogenetic Map7E3-F1UniSTS
Whitehead/MRC_RH71087.55UniSTS
AU015869  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387110,094,575 - 110,094,692UniSTSGRCm38
MGSCv377117,238,089 - 117,238,206UniSTSGRCm37
Celera7110,068,343 - 110,068,460UniSTS
Cytogenetic Map7E3-F1UniSTS
Whitehead/MRC_RH71086.9UniSTS
AA959806  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387110,095,082 - 110,095,233UniSTSGRCm38
MGSCv377117,238,596 - 117,238,747UniSTSGRCm37
Celera7110,068,850 - 110,069,001UniSTS
Cytogenetic Map7E3-F1UniSTS
Whitehead/MRC_RH71093.16UniSTS
UniSTS:235738  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387110,094,458 - 110,094,730UniSTSGRCm38
MGSCv377117,237,972 - 117,238,244UniSTSGRCm37
Celera7110,068,226 - 110,068,498UniSTS
Cytogenetic Map7E3-F1UniSTS
UniSTS:235744  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387110,095,145 - 110,095,344UniSTSGRCm38
MGSCv377117,238,659 - 117,238,858UniSTSGRCm37
Celera7110,068,913 - 110,069,112UniSTS
Cytogenetic Map7E3-F1UniSTS
D7Ertd805e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387110,094,498 - 110,094,713UniSTSGRCm38
MGSCv377117,238,012 - 117,238,227UniSTSGRCm37
Celera7110,068,266 - 110,068,481UniSTS
Cytogenetic Map7E3-F1UniSTS
cM Map750.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001374618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001405772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_009281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC147244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF011758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF145372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ278435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY603105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN709211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U29513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000084727   ⟹   ENSMUSP00000081778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,660,917 - 109,694,594 (+)Ensembl
GRCm38.p6 Ensembl7110,061,710 - 110,095,387 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169638   ⟹   ENSMUSP00000126015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,660,929 - 109,694,601 (+)Ensembl
GRCm38.p6 Ensembl7110,061,722 - 110,095,394 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,690,836 - 109,693,651 (+)Ensembl
GRCm38.p6 Ensembl7110,091,629 - 110,094,444 (+)Ensembl
RefSeq Acc Id: ENSMUST00000209505   ⟹   ENSMUSP00000147673
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,660,424 - 109,694,015 (+)Ensembl
GRCm38.p6 Ensembl7110,061,217 - 110,094,808 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211798   ⟹   ENSMUSP00000148235
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7109,660,917 - 109,694,225 (+)Ensembl
GRCm38.p6 Ensembl7110,061,710 - 110,095,018 (+)Ensembl
RefSeq Acc Id: NM_001374618   ⟹   NP_001361547
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,660,918 - 109,694,601 (+)NCBI
GRCm387110,061,711 - 110,095,394 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001405771   ⟹   NP_001392700
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,660,918 - 109,694,601 (+)NCBI
RefSeq Acc Id: NM_001405772   ⟹   NP_001392701
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,660,918 - 109,694,601 (+)NCBI
RefSeq Acc Id: NM_009281   ⟹   NP_033307
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,660,918 - 109,694,601 (+)NCBI
GRCm387110,061,702 - 110,095,392 (+)NCBI
MGSCv377117,205,216 - 117,238,906 (+)RGD
Celera7110,035,478 - 110,069,160 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036152854   ⟹   XP_036008747
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397109,660,898 - 109,694,603 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_033307   ⟸   NM_009281
- Peptide Label: isoform 2
- UniProtKB: O70230 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001361547   ⟸   NM_001374618
- Peptide Label: isoform 1
- UniProtKB: Q8CEI6 (UniProtKB/Swiss-Prot),   Q8BGB0 (UniProtKB/Swiss-Prot),   O70230 (UniProtKB/Swiss-Prot),   Q8CI27 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000081778   ⟸   ENSMUST00000084727
RefSeq Acc Id: ENSMUSP00000148235   ⟸   ENSMUST00000211798
RefSeq Acc Id: ENSMUSP00000147673   ⟸   ENSMUST00000209505
RefSeq Acc Id: ENSMUSP00000126015   ⟸   ENSMUST00000169638
RefSeq Acc Id: XP_036008747   ⟸   XM_036152854
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001392700   ⟸   NM_001405771
- Peptide Label: isoform 1
- UniProtKB: Q8CEI6 (UniProtKB/Swiss-Prot),   Q8BGB0 (UniProtKB/Swiss-Prot),   O70230 (UniProtKB/Swiss-Prot),   Q8CI27 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001392701   ⟸   NM_001405772
- Peptide Label: isoform 2
Protein Domains
C2H2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70230-F1-model_v2 AlphaFold O70230 1-638 view protein structure

Promoters
RGD ID:8665213
Promoter ID:EPDNEW_M10638
Type:multiple initiation site
Name:Zfp143_1
Description:Mus musculus zinc finger protein 143 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10639  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387110,061,711 - 110,061,771EPDNEW
RGD ID:8665215
Promoter ID:EPDNEW_M10639
Type:single initiation site
Name:Zfp143_2
Description:Mus musculus zinc finger protein 143 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10638  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387110,061,812 - 110,061,872EPDNEW
RGD ID:6840349
Promoter ID:MM_KWN:52278
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK132253_AA474408,   ENSMUST00000084727,   NM_009281
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367117,202,946 - 117,205,757 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1277969 AgrOrtholog
Ensembl Genes ENSMUSG00000061079 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000084727 ENTREZGENE
  ENSMUST00000084727.11 UniProtKB/Swiss-Prot
  ENSMUST00000169638.4 UniProtKB/Swiss-Prot
  ENSMUST00000209505.2 UniProtKB/Swiss-Prot
  ENSMUST00000211798 ENTREZGENE
  ENSMUST00000211798.2 UniProtKB/Swiss-Prot
Gene3D-CATH Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20841 UniProtKB/Swiss-Prot
MGD MGI:1277969 ENTREZGENE
NCBI Gene 20841 ENTREZGENE
PANTHER ZINC FINGER PROTEIN 76 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN ZIC AND GLI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfp143 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt O70230 ENTREZGENE
  Q60921_MOUSE UniProtKB/TrEMBL
  Q8BGB0 ENTREZGENE
  Q8CEI6 ENTREZGENE
  Q8CI27 ENTREZGENE
  ZN143_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q8BGB0 UniProtKB/Swiss-Prot
  Q8CEI6 UniProtKB/Swiss-Prot
  Q8CI27 UniProtKB/Swiss-Prot