Armc9 (armadillo repeat containing 9) - Rat Genome Database

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Gene: Armc9 (armadillo repeat containing 9) Mus musculus
Analyze
Symbol: Armc9
Name: armadillo repeat containing 9
RGD ID: 1313748
MGI Page MGI
Description: Involved in positive regulation of smoothened signaling pathway. Located in ciliary tip. Human ortholog(s) of this gene implicated in Joubert syndrome 30. Orthologous to human ARMC9 (armadillo repeat containing 9).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3830422A13Rik; 4831423D23Rik; 4930438O05Rik; 5730415N24Rik; lisH domain-containing protein ARMC9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,082,436 - 86,207,491 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl186,082,502 - 86,206,006 (+)EnsemblGRCm39 Ensembl
GRCm38186,154,729 - 86,278,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,154,780 - 86,278,284 (+)EnsemblGRCm38mm10GRCm38
MGSCv37188,051,355 - 88,174,859 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36187,985,963 - 88,109,455 (+)NCBIMGSCv36mm8
Celera189,120,275 - 89,246,607 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriole  (IBA,ISO,ISS)
ciliary basal body  (IBA,ISO,ISS)
ciliary tip  (IBA,IDA)
cilium  (IDA)
cytoplasm  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17967808  
PMID:18799693   PMID:21873635   PMID:28378742   PMID:29459677  


Genomics

Comparative Map Data
Armc9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,082,436 - 86,207,491 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl186,082,502 - 86,206,006 (+)EnsemblGRCm39 Ensembl
GRCm38186,154,729 - 86,278,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,154,780 - 86,278,284 (+)EnsemblGRCm38mm10GRCm38
MGSCv37188,051,355 - 88,174,859 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36187,985,963 - 88,109,455 (+)NCBIMGSCv36mm8
Celera189,120,275 - 89,246,607 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.94NCBI
ARMC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,198,631 - 231,376,848 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,198,546 - 231,376,848 (+)EnsemblGRCh38hg38GRCh38
GRCh372232,063,345 - 232,241,559 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362231,771,586 - 231,918,158 (+)NCBINCBI36Build 36hg18NCBI36
Celera2225,838,840 - 225,986,283 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2223,905,333 - 224,079,892 (+)NCBIHuRef
CHM1_12232,068,741 - 232,244,425 (+)NCBICHM1_1
T2T-CHM13v2.02231,683,119 - 231,861,312 (+)NCBIT2T-CHM13v2.0
Armc9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8994,250,492 - 94,376,589 (+)NCBIGRCr8
mRatBN7.2986,802,791 - 86,928,611 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl986,802,868 - 86,928,860 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx995,220,856 - 95,346,572 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09100,349,346 - 100,475,049 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0998,731,172 - 98,856,956 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0993,172,718 - 93,299,119 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl993,172,673 - 93,296,750 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0992,901,738 - 93,029,061 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4984,949,896 - 85,040,301 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1985,133,315 - 85,203,369 (+)NCBI
Celera984,223,640 - 84,349,427 (+)NCBICelera
Cytogenetic Map9q35NCBI
Armc9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554534,203,941 - 4,294,548 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554534,202,540 - 4,294,548 (-)NCBIChiLan1.0ChiLan1.0
ARMC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213133,825,093 - 134,015,098 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B133,840,041 - 134,030,054 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B118,454,310 - 118,644,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B237,243,120 - 237,438,796 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B237,243,120 - 237,412,620 (+)Ensemblpanpan1.1panPan2
ARMC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12543,117,272 - 43,264,854 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2543,110,182 - 43,292,123 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2543,677,561 - 43,824,074 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02543,374,305 - 43,522,462 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2543,374,358 - 43,522,477 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12543,302,605 - 43,450,077 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02543,145,863 - 43,293,242 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02543,300,930 - 43,448,386 (+)NCBIUU_Cfam_GSD_1.0
Armc9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303185,291,566 - 185,423,532 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365255,514,521 - 5,648,074 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365255,518,691 - 5,648,109 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARMC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15131,928,719 - 132,101,343 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115131,928,642 - 132,101,348 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215145,647,295 - 145,810,439 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARMC9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110117,225,992 - 117,407,017 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10117,233,990 - 117,408,348 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604082,038,371 - 82,217,851 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Armc9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248434,486,762 - 4,573,553 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248434,483,974 - 4,588,546 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Armc9
6111 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:2313
Count of miRNA genes:794
Interacting mature miRNAs:1033
Transcripts:ENSMUST00000027434, ENSMUST00000113309, ENSMUST00000123618, ENSMUST00000126579, ENSMUST00000131412, ENSMUST00000134858, ENSMUST00000135973, ENSMUST00000150059, ENSMUST00000153389, ENSMUST00000153653, ENSMUST00000155168, ENSMUST00000156675
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
25394563Skmw48_mskeletal muscle weight 48, EDL (mouse)18547800687323158Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
25394564Skmw49_mskeletal muscle weight 49, TA (mouse)18342011988552630Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
14696691Malq1_mmean attack latency QTL 1 (mouse)17797663787927722Mouse
14696692Tavq1_mtotal attack value QTL 1 (mouse)18197771588427722Mouse
14696693Avd2q1_mattack value day 2 QTL 1 (mouse)17897771790927722Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1302029Sst1_msusceptibility to tuberculosis 1 (mouse)Not determined18165211487130822Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182832635116832635Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179858683113858791Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179858683113858791Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
11667074Led2_mlate embryonic death 2 (mouse)185696027117195081Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17554919192941077Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182832635116832635Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse

Markers in Region
AA986695  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38186,235,302 - 86,235,397UniSTSGRCm38
MGSCv37188,131,877 - 88,131,972UniSTSGRCm37
Celera189,203,625 - 89,203,720UniSTS
Cytogenetic Map1C5UniSTS
Whitehead/MRC_RH11251.59UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001310702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_030184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC104896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK014450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ173978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000027434   ⟹   ENSMUSP00000027434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,082,532 - 86,206,006 (+)Ensembl
GRCm38.p6 Ensembl186,154,810 - 86,278,284 (+)Ensembl
Ensembl Acc Id: ENSMUST00000113309   ⟹   ENSMUSP00000108934
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,082,520 - 86,204,419 (+)Ensembl
GRCm38.p6 Ensembl186,154,798 - 86,276,697 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,082,502 - 86,174,048 (+)Ensembl
GRCm38.p6 Ensembl186,154,780 - 86,246,326 (+)Ensembl
Ensembl Acc Id: ENSMUST00000126579   ⟹   ENSMUSP00000116445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,172,288 - 86,196,808 (+)Ensembl
GRCm38.p6 Ensembl186,244,566 - 86,269,086 (+)Ensembl
Ensembl Acc Id: ENSMUST00000131412   ⟹   ENSMUSP00000117267
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,082,537 - 86,180,211 (+)Ensembl
GRCm38.p6 Ensembl186,154,815 - 86,252,489 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,082,520 - 86,107,572 (+)Ensembl
GRCm38.p6 Ensembl186,154,798 - 86,179,850 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,082,506 - 86,187,549 (+)Ensembl
GRCm38.p6 Ensembl186,154,784 - 86,259,827 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150059   ⟹   ENSMUSP00000116908
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,124,112 - 86,180,114 (+)Ensembl
GRCm38.p6 Ensembl186,196,390 - 86,252,392 (+)Ensembl
Ensembl Acc Id: ENSMUST00000153389
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,082,508 - 86,098,053 (+)Ensembl
GRCm38.p6 Ensembl186,154,786 - 86,170,331 (+)Ensembl
Ensembl Acc Id: ENSMUST00000153653
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,082,541 - 86,105,423 (+)Ensembl
GRCm38.p6 Ensembl186,154,819 - 86,177,701 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,082,506 - 86,141,389 (+)Ensembl
GRCm38.p6 Ensembl186,154,784 - 86,213,667 (+)Ensembl
Ensembl Acc Id: ENSMUST00000156675   ⟹   ENSMUSP00000119749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,130,218 - 86,180,211 (+)Ensembl
GRCm38.p6 Ensembl186,202,496 - 86,252,489 (+)Ensembl
Ensembl Acc Id: ENSMUST00000186509   ⟹   ENSMUSP00000139539
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,082,521 - 86,092,559 (+)Ensembl
GRCm38.p6 Ensembl186,154,799 - 86,164,837 (+)Ensembl
RefSeq Acc Id: NM_001310702   ⟹   NP_001297631
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,489 - 86,207,491 (+)NCBI
GRCm38186,154,780 - 86,278,284 (+)NCBI
Sequence:
RefSeq Acc Id: NM_027456   ⟹   NP_081732
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,489 - 86,180,215 (+)NCBI
GRCm38186,154,780 - 86,252,493 (+)NCBI
MGSCv37188,051,355 - 88,174,859 (+)RGD
Celera189,120,275 - 89,246,607 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_030184   ⟹   NP_084460
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,489 - 86,207,491 (+)NCBI
GRCm38186,154,780 - 86,278,284 (+)NCBI
MGSCv37188,051,355 - 88,174,859 (+)RGD
Celera189,120,275 - 89,246,607 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529952   ⟹   XP_006530015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,206,006 (+)NCBI
GRCm38186,154,729 - 86,278,284 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529953   ⟹   XP_006530016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,205,557 (+)NCBI
GRCm38186,154,729 - 86,278,284 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529954   ⟹   XP_006530017
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,206,006 (+)NCBI
GRCm38186,154,729 - 86,278,284 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529956   ⟹   XP_006530019
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,205,394 (+)NCBI
GRCm38186,154,729 - 86,278,284 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529957   ⟹   XP_006530020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,205,557 (+)NCBI
GRCm38186,154,729 - 86,277,681 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529958   ⟹   XP_006530021
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,206,006 (+)NCBI
GRCm38186,154,729 - 86,278,284 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529959   ⟹   XP_006530022
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,196,817 (+)NCBI
GRCm38186,154,729 - 86,269,095 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006529960   ⟹   XP_006530023
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,186,086 (+)NCBI
GRCm38186,154,729 - 86,258,364 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248111   ⟹   XP_011246413
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,170,337 (+)NCBI
GRCm38186,154,729 - 86,220,872 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011248112   ⟹   XP_011246414
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,170,337 (+)NCBI
GRCm38186,154,729 - 86,220,872 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154435   ⟹   XP_036010328
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,196,798 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001778466
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,205,557 (+)NCBI
GRCm38186,154,729 - 86,278,284 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947323
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,196,817 (+)NCBI
GRCm38186,154,729 - 86,269,095 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004935067
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,206,006 (+)NCBI
Sequence:
RefSeq Acc Id: XR_387199
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,206,006 (+)NCBI
GRCm38186,154,729 - 86,278,284 (+)NCBI
Sequence:
RefSeq Acc Id: XR_387200
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,204,404 (+)NCBI
GRCm38186,154,729 - 86,276,682 (+)NCBI
Sequence:
RefSeq Acc Id: XR_387202
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,082,436 - 86,189,847 (+)NCBI
GRCm38186,154,729 - 86,262,125 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001297631 (Get FASTA)   NCBI Sequence Viewer  
  NP_081732 (Get FASTA)   NCBI Sequence Viewer  
  NP_084460 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530015 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530016 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530017 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530019 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530020 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530021 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530022 (Get FASTA)   NCBI Sequence Viewer  
  XP_006530023 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246413 (Get FASTA)   NCBI Sequence Viewer  
  XP_011246414 (Get FASTA)   NCBI Sequence Viewer  
  XP_036010328 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH28964 (Get FASTA)   NCBI Sequence Viewer  
  AAH43101 (Get FASTA)   NCBI Sequence Viewer  
  BAB30807 (Get FASTA)   NCBI Sequence Viewer  
  BAB31770 (Get FASTA)   NCBI Sequence Viewer  
  BAB31811 (Get FASTA)   NCBI Sequence Viewer  
  BAC26890 (Get FASTA)   NCBI Sequence Viewer  
  BAC29299 (Get FASTA)   NCBI Sequence Viewer  
  BAC30457 (Get FASTA)   NCBI Sequence Viewer  
  BAC32462 (Get FASTA)   NCBI Sequence Viewer  
  BAC32837 (Get FASTA)   NCBI Sequence Viewer  
  BAC33231 (Get FASTA)   NCBI Sequence Viewer  
  BAC36270 (Get FASTA)   NCBI Sequence Viewer  
  BAE36370 (Get FASTA)   NCBI Sequence Viewer  
  EDL40228 (Get FASTA)   NCBI Sequence Viewer  
  EDL40229 (Get FASTA)   NCBI Sequence Viewer  
  EDL40230 (Get FASTA)   NCBI Sequence Viewer  
  EDL40231 (Get FASTA)   NCBI Sequence Viewer  
  EDL40232 (Get FASTA)   NCBI Sequence Viewer  
  EDL40233 (Get FASTA)   NCBI Sequence Viewer  
  EDL40234 (Get FASTA)   NCBI Sequence Viewer  
  EDL40235 (Get FASTA)   NCBI Sequence Viewer  
  EDL40236 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000027434
  ENSMUSP00000027434.9
  ENSMUSP00000108934
  ENSMUSP00000108934.3
  ENSMUSP00000116445.2
  ENSMUSP00000116908.2
  ENSMUSP00000117267
  ENSMUSP00000117267.2
  ENSMUSP00000119749.2
  ENSMUSP00000139539.2
GenBank Protein Q9D2I5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_084460   ⟸   NM_030184
- Peptide Label: isoform 1
- UniProtKB: Q9CYL1 (UniProtKB/Swiss-Prot),   Q8K112 (UniProtKB/Swiss-Prot),   Q8CBG2 (UniProtKB/Swiss-Prot),   Q8CA23 (UniProtKB/Swiss-Prot),   Q8C889 (UniProtKB/Swiss-Prot),   Q8C6A6 (UniProtKB/Swiss-Prot),   Q8BSX7 (UniProtKB/Swiss-Prot),   Q8BR45 (UniProtKB/Swiss-Prot),   Q8BQQ3 (UniProtKB/Swiss-Prot),   Q9D2L3 (UniProtKB/Swiss-Prot),   Q9D2I5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_081732   ⟸   NM_027456
- Peptide Label: isoform 2
- UniProtKB: Q9D2I5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006530015   ⟸   XM_006529952
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006530016   ⟸   XM_006529953
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006530021   ⟸   XM_006529958
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006530020   ⟸   XM_006529957
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006530017   ⟸   XM_006529954
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006530019   ⟸   XM_006529956
- Peptide Label: isoform X4
- UniProtKB: Q9D2I5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006530022   ⟸   XM_006529959
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006530023   ⟸   XM_006529960
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_011246413   ⟸   XM_011248111
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_011246414   ⟸   XM_011248112
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: NP_001297631   ⟸   NM_001310702
- Peptide Label: isoform 3
- UniProtKB: Q9D2I5 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000027434   ⟸   ENSMUST00000027434
Ensembl Acc Id: ENSMUSP00000116908   ⟸   ENSMUST00000150059
Ensembl Acc Id: ENSMUSP00000139539   ⟸   ENSMUST00000186509
Ensembl Acc Id: ENSMUSP00000108934   ⟸   ENSMUST00000113309
Ensembl Acc Id: ENSMUSP00000116445   ⟸   ENSMUST00000126579
Ensembl Acc Id: ENSMUSP00000117267   ⟸   ENSMUST00000131412
Ensembl Acc Id: ENSMUSP00000119749   ⟸   ENSMUST00000156675
RefSeq Acc Id: XP_036010328   ⟸   XM_036154435
- Peptide Label: isoform X8
Protein Domains
LisH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D2I5-F1-model_v2 AlphaFold Q9D2I5 1-817 view protein structure

Promoters
RGD ID:6874314
Promoter ID:EPDNEW_M608
Type:initiation region
Name:Armc9_1
Description:Mus musculus armadillo repeat containing 9 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38186,154,810 - 86,154,870EPDNEW
RGD ID:6817379
Promoter ID:MM_KWN:1464
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000113309,   NM_030184,   OTTMUST00000085607,   OTTMUST00000085611,   UC007BVA.1,   UC007BVB.1,   UC007BVC.1,   UC007BVE.1,   UC007BVF.1,   UC007BVH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36188,050,786 - 88,051,342 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926045 AgrOrtholog
Ensembl Genes ENSMUSG00000062590 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027434 ENTREZGENE
  ENSMUST00000027434.15 UniProtKB/Swiss-Prot
  ENSMUST00000113309 ENTREZGENE
  ENSMUST00000113309.9 UniProtKB/Swiss-Prot
  ENSMUST00000126579.2 UniProtKB/TrEMBL
  ENSMUST00000131412 ENTREZGENE
  ENSMUST00000131412.8 UniProtKB/Swiss-Prot
  ENSMUST00000150059.8 UniProtKB/TrEMBL
  ENSMUST00000156675.8 UniProtKB/TrEMBL
  ENSMUST00000186509.7 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARMC9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARMC9_ARM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARMC9_LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:78795 UniProtKB/Swiss-Prot
MGD MGI:1926045 ENTREZGENE
NCBI Gene 78795 ENTREZGENE
PANTHER LISH DOMAIN-CONTAINING PROTEIN ARMC9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14881 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ARMC9_ARM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARMC9_LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Armc9 PhenoGen
PROSITE LISH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WNY0_MOUSE UniProtKB/TrEMBL
  ARMC9_MOUSE UniProtKB/Swiss-Prot
  F6QPP0_MOUSE UniProtKB/TrEMBL
  F7AY77_MOUSE UniProtKB/TrEMBL
  F7B303_MOUSE UniProtKB/TrEMBL
  Q8BQQ3 ENTREZGENE
  Q8BR45 ENTREZGENE
  Q8BSX7 ENTREZGENE
  Q8C6A6 ENTREZGENE
  Q8C889 ENTREZGENE
  Q8CA23 ENTREZGENE
  Q8CBG2 ENTREZGENE
  Q8K112 ENTREZGENE
  Q9CYL1 ENTREZGENE
  Q9D2I5 ENTREZGENE
  Q9D2L3 ENTREZGENE
UniProt Secondary Q8BQQ3 UniProtKB/Swiss-Prot
  Q8BR45 UniProtKB/Swiss-Prot
  Q8BSX7 UniProtKB/Swiss-Prot
  Q8C6A6 UniProtKB/Swiss-Prot
  Q8C889 UniProtKB/Swiss-Prot
  Q8CA23 UniProtKB/Swiss-Prot
  Q8CBG2 UniProtKB/Swiss-Prot
  Q8K112 UniProtKB/Swiss-Prot
  Q9CYL1 UniProtKB/Swiss-Prot
  Q9D2L3 UniProtKB/Swiss-Prot