Spns1 (SPNS lysolipid transporter 1, lysophospholipid) - Rat Genome Database

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Gene: Spns1 (SPNS lysolipid transporter 1, lysophospholipid) Mus musculus
Analyze
Symbol: Spns1
Name: SPNS lysolipid transporter 1, lysophospholipid
RGD ID: 1313746
MGI Page MGI
Description: Predicted to enable transmembrane transporter activity. Involved in lysophospholipid transport. Acts upstream of or within phospholipid efflux and regulation of lysosomal lumen pH. Is active in lysosome. Is expressed in brain and retina. Orthologous to human SPNS1 (SPNS lysolipid transporter 1, lysophospholipid).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210013K02Rik; MSpin1; protein spinster homolog 1; riken cdna 2210013k02 gene; Spin1; Spinl; spinster homolog 1; spinster-like protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397125,969,232 - 125,977,179 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7125,969,232 - 125,976,622 (-)EnsemblGRCm39 Ensembl
GRCm387126,370,060 - 126,377,934 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,370,060 - 126,377,450 (-)EnsemblGRCm38mm10GRCm38
MGSCv377133,513,576 - 133,521,448 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,161,215 - 126,168,559 (-)NCBIMGSCv36mm8
Celera7126,222,257 - 126,230,148 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.01NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11340170   PMID:12477932   PMID:12904583   PMID:14610273   PMID:15226823   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:29162837   PMID:34709266   PMID:36161949   PMID:38355793   PMID:38451736  


Genomics

Comparative Map Data
Spns1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397125,969,232 - 125,977,179 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7125,969,232 - 125,976,622 (-)EnsemblGRCm39 Ensembl
GRCm387126,370,060 - 126,377,934 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,370,060 - 126,377,450 (-)EnsemblGRCm38mm10GRCm38
MGSCv377133,513,576 - 133,521,448 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,161,215 - 126,168,559 (-)NCBIMGSCv36mm8
Celera7126,222,257 - 126,230,148 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.01NCBI
SPNS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381628,974,778 - 28,984,765 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1628,974,221 - 28,984,548 (+)EnsemblGRCh38hg38GRCh38
GRCh371628,986,099 - 28,995,864 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361628,893,650 - 28,903,365 (+)NCBINCBI36Build 36hg18NCBI36
Celera1627,941,112 - 27,950,884 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1626,853,970 - 26,863,742 (+)NCBIHuRef
CHM1_11629,997,848 - 30,007,620 (+)NCBICHM1_1
T2T-CHM13v2.01629,255,893 - 29,265,880 (+)NCBIT2T-CHM13v2.0
Spns1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81190,372,663 - 190,380,192 (-)NCBIGRCr8
mRatBN7.21180,942,088 - 180,949,415 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,942,088 - 180,949,370 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,273,138 - 189,280,410 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01196,459,182 - 196,466,454 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01189,146,605 - 189,153,897 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01197,771,196 - 197,778,506 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1197,771,108 - 197,778,490 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01204,753,272 - 204,760,575 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,455,707 - 185,462,986 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,605,587 - 185,612,868 (-)NCBI
Celera1178,603,008 - 178,610,289 (-)NCBICelera
Cytogenetic Map1q36NCBI
Spns1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554936,505,230 - 6,514,307 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554936,506,449 - 6,514,308 (-)NCBIChiLan1.0ChiLan1.0
SPNS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21832,147,409 - 32,158,444 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11636,965,404 - 36,975,833 (+)NCBINHGRI_mPanPan1
SPNS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1618,450,019 - 18,458,456 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl618,412,219 - 18,459,438 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha620,026,942 - 20,035,385 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,584,718 - 18,593,162 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,547,797 - 18,593,173 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1618,384,202 - 18,392,645 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0618,298,985 - 18,307,428 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,615,403 - 18,623,857 (+)NCBIUU_Cfam_GSD_1.0
Spns1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344123,667,377 - 123,674,543 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650111,764,295 - 11,772,409 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650111,765,236 - 11,772,403 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPNS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,629,646 - 18,639,214 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,629,646 - 18,638,442 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,815,481 - 18,825,013 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPNS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,085,461 - 26,095,585 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl526,085,918 - 26,095,309 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660683,532,325 - 3,542,380 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spns1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478212,799,038 - 12,807,121 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478212,799,850 - 12,807,159 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1888
Count of miRNA genes:644
Interacting mature miRNAs:801
Transcripts:ENSMUST00000032994, ENSMUST00000119754, ENSMUST00000119846, ENSMUST00000126810, ENSMUST00000137263, ENSMUST00000138141, ENSMUST00000150476, ENSMUST00000150748, ENSMUST00000152000
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7117750722127967336Mouse
38501066Tip2_mtuberculosis immunophenotype 2, spleen CFU (mouse)7124299223126899172Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
4141945Il4ppq_mIL-4 producing potential QTL (mouse)Not determined7124513662128819324Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1301903Tlsm1_mthymic lymphoma susceptible 1 (mouse)Not determined7122250663135170901Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
1357613Bsbob2_mBSB obesity 2 (mouse)Not determined7122250663128819324Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_023712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_045537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF212372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK185025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY384284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY731880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR519967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000032994   ⟹   ENSMUSP00000032994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,969,232 - 125,976,622 (-)Ensembl
GRCm38.p6 Ensembl7126,370,060 - 126,377,450 (-)Ensembl
Ensembl Acc Id: ENSMUST00000119754   ⟹   ENSMUSP00000112555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,969,239 - 125,976,583 (-)Ensembl
GRCm38.p6 Ensembl7126,370,067 - 126,377,411 (-)Ensembl
Ensembl Acc Id: ENSMUST00000119846   ⟹   ENSMUSP00000112954
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,969,239 - 125,976,583 (-)Ensembl
GRCm38.p6 Ensembl7126,370,067 - 126,377,411 (-)Ensembl
Ensembl Acc Id: ENSMUST00000126810
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,969,239 - 125,976,583 (-)Ensembl
GRCm38.p6 Ensembl7126,370,067 - 126,377,411 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,970,392 - 125,972,091 (-)Ensembl
GRCm38.p6 Ensembl7126,371,220 - 126,372,919 (-)Ensembl
Ensembl Acc Id: ENSMUST00000138141   ⟹   ENSMUSP00000117803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,969,239 - 125,976,583 (-)Ensembl
GRCm38.p6 Ensembl7126,370,067 - 126,377,411 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150476   ⟹   ENSMUSP00000115152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,971,917 - 125,976,379 (-)Ensembl
GRCm38.p6 Ensembl7126,372,745 - 126,377,207 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150748
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,972,832 - 125,973,535 (-)Ensembl
GRCm38.p6 Ensembl7126,373,660 - 126,374,363 (-)Ensembl
Ensembl Acc Id: ENSMUST00000152000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,971,036 - 125,971,734 (-)Ensembl
GRCm38.p6 Ensembl7126,371,864 - 126,372,562 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205366   ⟹   ENSMUSP00000145761
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,970,752 - 125,976,267 (-)Ensembl
GRCm38.p6 Ensembl7126,371,580 - 126,377,095 (-)Ensembl
Ensembl Acc Id: ENSMUST00000205930   ⟹   ENSMUSP00000146172
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,969,907 - 125,976,201 (-)Ensembl
GRCm38.p6 Ensembl7126,370,735 - 126,377,029 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206094
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,973,448 - 125,975,900 (-)Ensembl
GRCm38.p6 Ensembl7126,374,276 - 126,376,728 (-)Ensembl
Ensembl Acc Id: ENSMUST00000206377
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7125,975,870 - 125,976,593 (-)Ensembl
GRCm38.p6 Ensembl7126,376,698 - 126,377,421 (-)Ensembl
RefSeq Acc Id: NM_023712   ⟹   NP_076201
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397125,969,232 - 125,977,106 (-)NCBI
GRCm387126,370,060 - 126,377,934 (-)ENTREZGENE
MGSCv377133,513,576 - 133,521,448 (-)RGD
Celera7126,222,255 - 126,230,148 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_045537
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397125,969,232 - 125,977,106 (-)NCBI
GRCm387126,370,060 - 126,377,934 (-)ENTREZGENE
Celera7126,222,255 - 126,230,148 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036153474   ⟹   XP_036009367
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397125,969,239 - 125,977,179 (-)NCBI
Sequence:
RefSeq Acc Id: NP_076201   ⟸   NM_023712
- UniProtKB: Q99LN7 (UniProtKB/Swiss-Prot),   Q3TKM0 (UniProtKB/Swiss-Prot),   Q9EQK0 (UniProtKB/Swiss-Prot),   Q8R0G7 (UniProtKB/Swiss-Prot),   D3YTR6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000032994   ⟸   ENSMUST00000032994
Ensembl Acc Id: ENSMUSP00000115152   ⟸   ENSMUST00000150476
Ensembl Acc Id: ENSMUSP00000112555   ⟸   ENSMUST00000119754
Ensembl Acc Id: ENSMUSP00000112954   ⟸   ENSMUST00000119846
Ensembl Acc Id: ENSMUSP00000117803   ⟸   ENSMUST00000138141
Ensembl Acc Id: ENSMUSP00000146172   ⟸   ENSMUST00000205930
Ensembl Acc Id: ENSMUSP00000145761   ⟸   ENSMUST00000205366
RefSeq Acc Id: XP_036009367   ⟸   XM_036153474
- Peptide Label: isoform X1
Protein Domains
Major facilitator superfamily (MFS) profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R0G7-F1-model_v2 AlphaFold Q8R0G7 1-528 view protein structure

Promoters
RGD ID:8665525
Promoter ID:EPDNEW_M10794
Type:multiple initiation site
Name:Spns1_1
Description:Mus musculus spinster homolog 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387126,377,422 - 126,377,482EPDNEW
RGD ID:6842099
Promoter ID:MM_KWN:52657
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Spleen
Transcripts:OTTMUST00000077922,   OTTMUST00000077923
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367133,515,801 - 133,516,301 (-)MPROMDB
RGD ID:6842103
Promoter ID:MM_KWN:52658
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:OTTMUST00000077921
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367133,517,501 - 133,518,547 (-)MPROMDB
RGD ID:6842098
Promoter ID:MM_KWN:52659
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000119754,   ENSMUST00000119846,   OTTMUST00000077915,   OTTMUST00000077916,   OTTMUST00000077918,   OTTMUST00000077920
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367133,520,776 - 133,521,367 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920908 AgrOrtholog
Ensembl Genes ENSMUSG00000030741 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032994 ENTREZGENE
  ENSMUST00000032994.15 UniProtKB/Swiss-Prot
  ENSMUST00000119754.8 UniProtKB/TrEMBL
  ENSMUST00000119846.8 UniProtKB/TrEMBL
  ENSMUST00000138141 ENTREZGENE
  ENSMUST00000138141.8 UniProtKB/TrEMBL
  ENSMUST00000150476.3 UniProtKB/TrEMBL
  ENSMUST00000205366.2 UniProtKB/TrEMBL
  ENSMUST00000205930.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro MFS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_spinster-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:73658 UniProtKB/Swiss-Prot
MGD MGI:1920908 ENTREZGENE
NCBI Gene 73658 ENTREZGENE
PANTHER PROTEIN SPINSTER HOMOLOG 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23505 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Spns1 PhenoGen
PROSITE MFS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RNZ2_MOUSE UniProtKB/TrEMBL
  A0A0U1RPY3_MOUSE UniProtKB/TrEMBL
  D3YTR6 ENTREZGENE, UniProtKB/TrEMBL
  D3YWA9_MOUSE UniProtKB/TrEMBL
  D3YWU4_MOUSE UniProtKB/TrEMBL
  D6REG2_MOUSE UniProtKB/TrEMBL
  Q3TKM0 ENTREZGENE
  Q8R0G7 ENTREZGENE
  Q99LN7 ENTREZGENE
  Q9EQK0 ENTREZGENE
  SPNS1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TKM0 UniProtKB/Swiss-Prot
  Q99LN7 UniProtKB/Swiss-Prot
  Q9EQK0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-11-01 Spns1  SPNS lysolipid transporter 1, lysophospholipid  Spns1  spinster homolog 1  Symbol and/or name change 5135510 APPROVED
2012-07-17 Spns1  spinster homolog 1  Spns1  spinster homolog 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED