GNPDA2 (glucosamine-6-phosphate deaminase 2) - Rat Genome Database

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Gene: GNPDA2 (glucosamine-6-phosphate deaminase 2) Homo sapiens
Analyze
Symbol: GNPDA2
Name: glucosamine-6-phosphate deaminase 2
RGD ID: 1313596
HGNC Page HGNC:21526
Description: Enables glucosamine-6-phosphate deaminase activity. Involved in UDP-N-acetylglucosamine biosynthetic process. Located in nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 4921523I18Rik; glcN6P deaminase 2; glucosamine-6-phosphate isomerase 2; glucosamine-6-phosphate isomerase SB52; GNP2; GNPDA 2; putative glucosamine-6-phosphate isomerase; SB52
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: AL671309.1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38444,701,795 - 44,726,556 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl444,682,200 - 44,726,588 (-)EnsemblGRCh38hg38GRCh38
GRCh37444,703,812 - 44,728,573 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36444,398,925 - 44,423,369 (-)NCBINCBI36Build 36hg18NCBI36
Build 34444,545,096 - 44,569,540NCBI
Celera445,152,192 - 45,176,638 (-)NCBICelera
Cytogenetic Map4p12NCBI
HuRef444,025,436 - 44,050,279 (-)NCBIHuRef
CHM1_1444,702,923 - 44,727,736 (-)NCBICHM1_1
T2T-CHM13v2.0444,668,716 - 44,693,480 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Body Weight  (EXP)
genetic disease  (IAGP)
obesity  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
cytosol  (IEA,TAS)
nucleus  (HDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12616532   PMID:12965206   PMID:14702039   PMID:15342556   PMID:17207965   PMID:18029348   PMID:19079261   PMID:19164386   PMID:19692490   PMID:19746409   PMID:19812171  
PMID:19851340   PMID:19910641   PMID:19910938   PMID:20215397   PMID:20351267   PMID:20520848   PMID:20571754   PMID:20712903   PMID:20724581   PMID:20725061   PMID:20816152   PMID:20816195  
PMID:20843981   PMID:20935630   PMID:21147891   PMID:21248185   PMID:21369819   PMID:21544081   PMID:21593506   PMID:21630459   PMID:21773002   PMID:21779088   PMID:21796137   PMID:21796141  
PMID:21873635   PMID:21912638   PMID:21935397   PMID:22029802   PMID:22083549   PMID:22179955   PMID:22344219   PMID:22456663   PMID:22511254   PMID:22710927   PMID:22863883   PMID:23563607  
PMID:23583978   PMID:23669352   PMID:24861553   PMID:25231870   PMID:25416956   PMID:26186194   PMID:26344197   PMID:26887390   PMID:28514442   PMID:29892012   PMID:32296183   PMID:33637726  
PMID:33961781   PMID:35831314   PMID:36215168  


Genomics

Comparative Map Data
GNPDA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38444,701,795 - 44,726,556 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl444,682,200 - 44,726,588 (-)EnsemblGRCh38hg38GRCh38
GRCh37444,703,812 - 44,728,573 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36444,398,925 - 44,423,369 (-)NCBINCBI36Build 36hg18NCBI36
Build 34444,545,096 - 44,569,540NCBI
Celera445,152,192 - 45,176,638 (-)NCBICelera
Cytogenetic Map4p12NCBI
HuRef444,025,436 - 44,050,279 (-)NCBIHuRef
CHM1_1444,702,923 - 44,727,736 (-)NCBICHM1_1
T2T-CHM13v2.0444,668,716 - 44,693,480 (-)NCBIT2T-CHM13v2.0
Gnpda2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39569,732,344 - 69,749,684 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl569,730,451 - 69,749,683 (-)EnsemblGRCm39 Ensembl
GRCm38569,574,998 - 69,592,332 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl569,573,108 - 69,592,340 (-)EnsemblGRCm38mm10GRCm38
MGSCv37569,966,240 - 69,983,524 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36569,852,245 - 69,871,420 (-)NCBIMGSCv36mm8
Celera566,858,645 - 66,875,974 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map537.13NCBI
Gnpda2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81438,874,611 - 38,892,688 (+)NCBIGRCr8
mRatBN7.21438,520,663 - 38,538,713 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1438,520,705 - 38,538,713 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1438,896,548 - 38,914,550 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01440,196,580 - 40,214,582 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01438,677,427 - 38,695,429 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01462,628,102 - 62,646,158 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1462,628,111 - 62,646,110 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01462,730,787 - 62,749,053 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41441,048,839 - 41,067,584 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11441,051,193 - 41,069,954 (+)NCBI
Celera1437,719,177 - 37,737,184 (+)NCBICelera
Cytogenetic Map14p11NCBI
Gnpda2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554433,338,300 - 3,360,561 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554433,338,300 - 3,360,561 (+)NCBIChiLan1.0ChiLan1.0
GNPDA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2344,878,721 - 44,923,195 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1445,065,371 - 45,109,845 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0439,011,732 - 39,056,234 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1444,861,252 - 44,905,733 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl444,881,220 - 44,905,733 (-)Ensemblpanpan1.1panPan2
GNPDA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11341,207,192 - 41,228,573 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1341,207,897 - 41,232,404 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1341,160,250 - 41,185,478 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01341,814,500 - 41,839,486 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1341,801,109 - 41,839,600 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11341,494,001 - 41,518,794 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01341,538,927 - 41,563,984 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01341,931,427 - 41,956,525 (-)NCBIUU_Cfam_GSD_1.0
LOC101968793
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528534,874,360 - 34,958,967 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648211,339,682 - 11,362,150 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_00493648211,397,322 - 11,423,885 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648211,382,358 - 11,423,823 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GNPDA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl835,193,659 - 35,216,206 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1835,192,509 - 35,219,527 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2836,899,569 - 36,925,403 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GNPDA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1275,562,894 - 5,587,459 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl275,562,916 - 5,586,543 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604751,710,663 - 51,735,473 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gnpda2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476122,261,869 - 22,286,147 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476122,261,838 - 22,286,180 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in GNPDA2
5 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 4p13-q13.1(chr4:44356201-62245882)x3 copy number gain See cases [RCV000050683] Chr4:44356201..62245882 [GRCh38]
Chr4:44358218..63111600 [GRCh37]
Chr4:44052975..62794195 [NCBI36]
Chr4:4p13-q13.1
pathogenic
GRCh38/hg38 4p13-11(chr4:44577678-49081273)x3 copy number gain See cases [RCV000051770] Chr4:44577678..49081273 [GRCh38]
Chr4:44579695..49083290 [GRCh37]
Chr4:44274452..48778047 [NCBI36]
Chr4:4p13-11
pathogenic
GRCh38/hg38 4p13-12(chr4:44297326-45198683)x1 copy number loss See cases [RCV000053264] Chr4:44297326..45198683 [GRCh38]
Chr4:44299343..45200700 [GRCh37]
Chr4:43994100..44895457 [NCBI36]
Chr4:4p13-12
pathogenic
GRCh38/hg38 4p14-11(chr4:40496476-49579850)x3 copy number gain See cases [RCV000134946] Chr4:40496476..49579850 [GRCh38]
Chr4:40498493..49581867 [GRCh37]
Chr4:40193250..49276624 [NCBI36]
Chr4:4p14-11
pathogenic
GRCh38/hg38 4p16.3-12(chr4:36424-47491595)x3 copy number gain See cases [RCV000137261] Chr4:36424..47491595 [GRCh38]
Chr4:36424..47493612 [GRCh37]
Chr4:26424..47188369 [NCBI36]
Chr4:4p16.3-12
pathogenic
GRCh38/hg38 4p14-12(chr4:39444586-46117146)x3 copy number gain See cases [RCV000138039] Chr4:39444586..46117146 [GRCh38]
Chr4:39446206..46119163 [GRCh37]
Chr4:39122601..45813920 [NCBI36]
Chr4:4p14-12
uncertain significance
GRCh38/hg38 4p12(chr4:44703597-44970949)x1 copy number loss See cases [RCV000138711] Chr4:44703597..44970949 [GRCh38]
Chr4:44705614..44972966 [GRCh37]
Chr4:44400371..44667723 [NCBI36]
Chr4:4p12
likely benign
GRCh37/hg19 4p14-11(chr4:38532827-49064044)x3 copy number gain See cases [RCV000240190] Chr4:38532827..49064044 [GRCh37]
Chr4:4p14-11
pathogenic
GRCh37/hg19 4p16.3-11(chr4:12440-49064044)x3 copy number gain See cases [RCV000240562] Chr4:12440..49064044 [GRCh37]
Chr4:4p16.3-11
pathogenic
GRCh37/hg19 4p16.3-11(chr4:68345-49089361)x3 copy number gain See cases [RCV000449078] Chr4:68345..49089361 [GRCh37]
Chr4:4p16.3-11
pathogenic
GRCh37/hg19 4p16.3-11(chr4:68345-49089361)x3 copy number gain See cases [RCV002292704] Chr4:68345..49089361 [GRCh37]
Chr4:4p16.3-11
pathogenic
GRCh37/hg19 4p16.3-11(chr4:68345-49093788)x3 copy number gain See cases [RCV000446451] Chr4:68345..49093788 [GRCh37]
Chr4:4p16.3-11
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:12440-190904441)x3 copy number gain See cases [RCV000446653] Chr4:12440..190904441 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473) copy number gain See cases [RCV000510453] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p12(chr4:44637850-46618566)x1 copy number loss See cases [RCV000511349] Chr4:44637850..46618566 [GRCh37]
Chr4:4p12
uncertain significance
GRCh37/hg19 4p16.3-q13.1(chr4:68345-66440622)x3 copy number gain See cases [RCV000511193] Chr4:68345..66440622 [GRCh37]
Chr4:4p16.3-q13.1
pathogenic
NM_138335.3(GNPDA2):c.803C>T (p.Pro268Leu) single nucleotide variant Inborn genetic diseases [RCV003256972] Chr4:44703109 [GRCh38]
Chr4:44705126 [GRCh37]
Chr4:4p12
uncertain significance
GRCh37/hg19 4p16.3-q35.2(chr4:68346-190957473)x3 copy number gain See cases [RCV000512241] Chr4:68346..190957473 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-11(chr4:68345-49089361)x3 copy number gain not provided [RCV000682363] Chr4:68345..49089361 [GRCh37]
Chr4:4p16.3-11
pathogenic
GRCh37/hg19 4p13-12(chr4:42193789-47001790)x3 copy number gain not provided [RCV000682397] Chr4:42193789..47001790 [GRCh37]
Chr4:4p13-12
uncertain significance
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190915650)x3 copy number gain not provided [RCV000743155] Chr4:49450..190915650 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:49450-190963766)x3 copy number gain not provided [RCV000743156] Chr4:49450..190963766 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-q35.2(chr4:11525-191028879)x3 copy number gain not provided [RCV000743147] Chr4:11525..191028879 [GRCh37]
Chr4:4p16.3-q35.2
pathogenic
GRCh37/hg19 4p16.3-11(chr4:1356924-49659859)x3 copy number gain not provided [RCV000743201] Chr4:1356924..49659859 [GRCh37]
Chr4:4p16.3-11
pathogenic
GRCh37/hg19 4p16.3-12(chr4:49450-46339070)x3 copy number gain not provided [RCV000743154] Chr4:49450..46339070 [GRCh37]
Chr4:4p16.3-12
pathogenic
NM_138335.3(GNPDA2):c.96C>T (p.Asp32=) single nucleotide variant not provided [RCV000964464] Chr4:44722112 [GRCh38]
Chr4:44724129 [GRCh37]
Chr4:4p12
benign
NM_138335.3(GNPDA2):c.324C>T (p.Asp108=) single nucleotide variant not provided [RCV000943274] Chr4:44717198 [GRCh38]
Chr4:44719215 [GRCh37]
Chr4:4p12
likely benign
GRCh37/hg19 4p13-12(chr4:42626603-45438191)x1 copy number loss not provided [RCV001005536] Chr4:42626603..45438191 [GRCh37]
Chr4:4p13-12
uncertain significance
GRCh37/hg19 4p16.3-11(chr4:49450-49620898)x3 copy number gain See cases [RCV001194594] Chr4:49450..49620898 [GRCh37]
Chr4:4p16.3-11
pathogenic
GRCh37/hg19 4p12(chr4:44669198-44770906)x1 copy number loss not provided [RCV001005537] Chr4:44669198..44770906 [GRCh37]
Chr4:4p12
likely benign
GRCh37/hg19 4p12(chr4:44725333-45228574)x1 copy number loss not provided [RCV001259838] Chr4:44725333..45228574 [GRCh37]
Chr4:4p12
uncertain significance
GRCh37/hg19 4p12(chr4:44704375-44818450) copy number loss not specified [RCV002053416] Chr4:44704375..44818450 [GRCh37]
Chr4:4p12
uncertain significance
GRCh37/hg19 4p16.3-12(chr4:114784-47569569)x3 copy number gain FETAL DEMISE [RCV002282978] Chr4:114784..47569569 [GRCh37]
Chr4:4p16.3-12
pathogenic
NM_138335.3(GNPDA2):c.700C>T (p.Arg234Trp) single nucleotide variant Inborn genetic diseases [RCV002911987] Chr4:44707821 [GRCh38]
Chr4:44709838 [GRCh37]
Chr4:4p12
uncertain significance
NM_138335.3(GNPDA2):c.235A>G (p.Arg79Gly) single nucleotide variant Inborn genetic diseases [RCV003219456] Chr4:44717287 [GRCh38]
Chr4:44719304 [GRCh37]
Chr4:4p12
uncertain significance
GRCh38/hg38 4p16.3-11(chr4:1-49062177)x3 copy number gain Neurodevelopmental disorder [RCV003327611] Chr4:1..49062177 [GRCh38]
Chr4:4p16.3-11
pathogenic
GRCh38/hg38 4p16.3-q12(chr4:85624-57073230)x3 copy number gain Neurodevelopmental disorder [RCV003327613] Chr4:85624..57073230 [GRCh38]
Chr4:4p16.3-q12
pathogenic
NM_138335.3(GNPDA2):c.620A>C (p.His207Pro) single nucleotide variant Inborn genetic diseases [RCV003357861] Chr4:44707901 [GRCh38]
Chr4:44709918 [GRCh37]
Chr4:4p12
uncertain significance
NM_138335.3(GNPDA2):c.475T>A (p.Leu159Ile) single nucleotide variant Inborn genetic diseases [RCV003351806] Chr4:44711072 [GRCh38]
Chr4:44713089 [GRCh37]
Chr4:4p12
uncertain significance
NM_138335.3(GNPDA2):c.178C>T (p.His60Tyr) single nucleotide variant Inborn genetic diseases [RCV003373406] Chr4:44718357 [GRCh38]
Chr4:44720374 [GRCh37]
Chr4:4p12
uncertain significance
NM_138335.3(GNPDA2):c.469A>G (p.Thr157Ala) single nucleotide variant Inborn genetic diseases [RCV003383099] Chr4:44711078 [GRCh38]
Chr4:44713095 [GRCh37]
Chr4:4p12
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2632
Count of miRNA genes:952
Interacting mature miRNAs:1144
Transcripts:ENST00000295448, ENST00000507534, ENST00000507917, ENST00000509756, ENST00000511187, ENST00000608855, ENST00000609092
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D4S1248  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37444,723,305 - 44,723,458UniSTSGRCh37
Build 36444,418,062 - 44,418,215RGDNCBI36
Celera445,171,328 - 45,171,481RGD
Cytogenetic Map4p12UniSTS
HuRef444,044,934 - 44,045,087UniSTS
TNG Radiation Hybrid Map425567.0UniSTS
G33944  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37444,723,217 - 44,723,456UniSTSGRCh37
Build 36444,417,974 - 44,418,213RGDNCBI36
Celera445,171,240 - 45,171,479RGD
Cytogenetic Map4p12UniSTS
HuRef444,044,846 - 44,045,085UniSTS
SHGC-149837  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37444,727,086 - 44,727,390UniSTSGRCh37
Build 36444,421,843 - 44,422,147RGDNCBI36
Celera445,175,109 - 45,175,413RGD
Cytogenetic Map4p12UniSTS
HuRef444,048,716 - 44,049,015UniSTS
TNG Radiation Hybrid Map425575.0UniSTS
SHGC-59698  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37444,704,239 - 44,704,409UniSTSGRCh37
Build 36444,398,996 - 44,399,166RGDNCBI36
Celera445,152,263 - 45,152,433RGD
Cytogenetic Map4p12UniSTS
HuRef444,025,863 - 44,026,033UniSTS
GeneMap99-GB4 RH Map4223.38UniSTS
NCBI RH Map4513.8UniSTS
WI-13892  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37444,706,820 - 44,706,969UniSTSGRCh37
Build 36444,401,577 - 44,401,726RGDNCBI36
Celera445,154,844 - 45,154,993RGD
Cytogenetic Map4p12UniSTS
HuRef444,028,444 - 44,028,593UniSTS
TNG Radiation Hybrid Map425558.0UniSTS
GeneMap99-GB4 RH Map4223.61UniSTS
Whitehead-RH Map4238.7UniSTS
NCBI RH Map4513.8UniSTS
SHGC-59695  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37444,706,683 - 44,706,789UniSTSGRCh37
Build 36444,401,440 - 44,401,546RGDNCBI36
Celera445,154,707 - 45,154,813RGD
Cytogenetic Map4p12UniSTS
HuRef444,028,307 - 44,028,413UniSTS
GeneMap99-GB4 RH Map4223.26UniSTS
NCBI RH Map4513.8UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 411 303 286 8 590 9 500 311 952 96 448 382 5 1 65 398 1
Low 2025 2317 1416 592 995 432 3857 1874 2782 322 1009 1231 170 1138 2390 3 2
Below cutoff 2 371 23 23 363 23 12 1 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001270880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001270881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_138335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_073095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_007096361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008486911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB209904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC096586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF247786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK055639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK308920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY173948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC015532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP274548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ021991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY163015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY180477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000295448   ⟹   ENSP00000295448
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl444,701,795 - 44,726,556 (-)Ensembl
RefSeq Acc Id: ENST00000507534   ⟹   ENSP00000427423
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl444,702,788 - 44,726,523 (-)Ensembl
RefSeq Acc Id: ENST00000507917   ⟹   ENSP00000425868
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl444,701,868 - 44,726,570 (-)Ensembl
RefSeq Acc Id: ENST00000509756   ⟹   ENSP00000424061
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl444,703,246 - 44,726,545 (-)Ensembl
RefSeq Acc Id: ENST00000511187
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl444,706,412 - 44,726,588 (-)Ensembl
RefSeq Acc Id: ENST00000608855   ⟹   ENSP00000477137
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl444,682,200 - 44,707,878 (-)Ensembl
RefSeq Acc Id: ENST00000609092   ⟹   ENSP00000476853
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl444,682,208 - 44,711,023 (-)Ensembl
RefSeq Acc Id: NM_001270880   ⟹   NP_001257809
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38444,701,795 - 44,726,556 (-)NCBI
GRCh37444,694,190 - 44,728,651 (-)NCBI
HuRef444,025,436 - 44,050,279 (-)NCBI
CHM1_1444,702,923 - 44,727,736 (-)NCBI
T2T-CHM13v2.0444,668,716 - 44,693,480 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001270881   ⟹   NP_001257810
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38444,701,795 - 44,726,556 (-)NCBI
GRCh37444,694,190 - 44,728,651 (-)NCBI
HuRef444,025,436 - 44,050,279 (-)NCBI
CHM1_1444,702,923 - 44,727,736 (-)NCBI
T2T-CHM13v2.0444,668,716 - 44,693,480 (-)NCBI
Sequence:
RefSeq Acc Id: NM_138335   ⟹   NP_612208
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38444,701,795 - 44,726,556 (-)NCBI
GRCh37444,694,190 - 44,728,651 (-)NCBI
Build 36444,398,925 - 44,423,369 (-)NCBI Archive
Celera445,152,192 - 45,176,638 (-)RGD
HuRef444,025,436 - 44,050,279 (-)NCBI
CHM1_1444,702,923 - 44,727,736 (-)NCBI
T2T-CHM13v2.0444,668,716 - 44,693,480 (-)NCBI
Sequence:
RefSeq Acc Id: NR_073094
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38444,701,795 - 44,726,556 (-)NCBI
GRCh37444,694,190 - 44,728,651 (-)NCBI
HuRef444,025,436 - 44,050,279 (-)NCBI
CHM1_1444,702,923 - 44,727,736 (-)NCBI
T2T-CHM13v2.0444,668,716 - 44,693,480 (-)NCBI
Sequence:
RefSeq Acc Id: NR_073095
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38444,701,795 - 44,726,556 (-)NCBI
GRCh37444,694,190 - 44,728,651 (-)NCBI
HuRef444,025,436 - 44,050,279 (-)NCBI
CHM1_1444,702,923 - 44,727,736 (-)NCBI
T2T-CHM13v2.0444,668,716 - 44,693,480 (-)NCBI
Sequence:
RefSeq Acc Id: XR_007096361
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38444,711,055 - 44,726,556 (-)NCBI
RefSeq Acc Id: XR_008486911
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0444,677,975 - 44,693,480 (-)NCBI
RefSeq Acc Id: NP_612208   ⟸   NM_138335
- Peptide Label: isoform 1
- UniProtKB: Q96BJ4 (UniProtKB/Swiss-Prot),   Q8NCZ8 (UniProtKB/Swiss-Prot),   Q59EA7 (UniProtKB/Swiss-Prot),   Q2VYF1 (UniProtKB/Swiss-Prot),   B4DJF3 (UniProtKB/Swiss-Prot),   Q96NC6 (UniProtKB/Swiss-Prot),   Q8TDQ7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257810   ⟸   NM_001270881
- Peptide Label: isoform 3
- UniProtKB: Q8TDQ7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001257809   ⟸   NM_001270880
- Peptide Label: isoform 2
- UniProtKB: Q8TDQ7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000476853   ⟸   ENST00000609092
RefSeq Acc Id: ENSP00000295448   ⟸   ENST00000295448
RefSeq Acc Id: ENSP00000425868   ⟸   ENST00000507917
RefSeq Acc Id: ENSP00000427423   ⟸   ENST00000507534
RefSeq Acc Id: ENSP00000424061   ⟸   ENST00000509756
RefSeq Acc Id: ENSP00000477137   ⟸   ENST00000608855

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8TDQ7-F1-model_v2 AlphaFold Q8TDQ7 1-276 view protein structure

Promoters
RGD ID:6802342
Promoter ID:HG_KWN:48150
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000216874,   UC003GWZ.1,   UC010IGA.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36444,423,154 - 44,423,654 (-)MPROMDB
RGD ID:6867322
Promoter ID:EPDNEW_H6826
Type:initiation region
Name:GNPDA2_1
Description:glucosamine-6-phosphate deaminase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6828  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38444,726,556 - 44,726,616EPDNEW
RGD ID:6867326
Promoter ID:EPDNEW_H6828
Type:initiation region
Name:GNPDA2_2
Description:glucosamine-6-phosphate deaminase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H6826  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38444,726,588 - 44,726,648EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:21526 AgrOrtholog
COSMIC GNPDA2 COSMIC
Ensembl Genes ENSG00000163281 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000295448 ENTREZGENE
  ENST00000295448.8 UniProtKB/Swiss-Prot
  ENST00000507534 ENTREZGENE
  ENST00000507534.5 UniProtKB/Swiss-Prot
  ENST00000507917 ENTREZGENE
  ENST00000507917.5 UniProtKB/Swiss-Prot
  ENST00000509756.1 UniProtKB/Swiss-Prot
  ENST00000608855.1 UniProtKB/TrEMBL
  ENST00000609092.5 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1360 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000163281 GTEx
HGNC ID HGNC:21526 ENTREZGENE
Human Proteome Map GNPDA2 Human Proteome Map
InterPro Glc/Gal-6P_isomerase UniProtKB/Swiss-Prot
  Glucosamine6P_isomerase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glucosamine6P_isomerase_CS UniProtKB/Swiss-Prot
  NagB/RpiA_transferase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:132789 UniProtKB/Swiss-Prot
NCBI Gene 132789 ENTREZGENE
OMIM 613222 OMIM
PANTHER GLUCOSAMINE-6-PHOSPHATE ISOMERASE UniProtKB/TrEMBL
  GLUCOSAMINE-6-PHOSPHATE ISOMERASE 1 UniProtKB/TrEMBL
  GLUCOSAMINE-6-PHOSPHATE ISOMERASE 2 UniProtKB/Swiss-Prot
  PTHR11280 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glucosamine_iso UniProtKB/Swiss-Prot
PharmGKB PA134939177 PharmGKB
PROSITE GLC_GALNAC_ISOMERASE UniProtKB/Swiss-Prot
Superfamily-SCOP SSF100950 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B4DJF3 ENTREZGENE
  GNPI2_HUMAN UniProtKB/Swiss-Prot
  Q2VYF1 ENTREZGENE
  Q59EA7 ENTREZGENE
  Q8NCZ8 ENTREZGENE
  Q8TDQ7 ENTREZGENE
  Q96BJ4 ENTREZGENE
  Q96NC6 ENTREZGENE
  V9GYK3_HUMAN UniProtKB/TrEMBL
  V9GYW0_HUMAN UniProtKB/TrEMBL
UniProt Secondary B4DJF3 UniProtKB/Swiss-Prot
  Q2VYF1 UniProtKB/Swiss-Prot
  Q59EA7 UniProtKB/Swiss-Prot
  Q8NCZ8 UniProtKB/Swiss-Prot
  Q96BJ4 UniProtKB/Swiss-Prot
  Q96NC6 UniProtKB/Swiss-Prot