Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | schizophrenia | | ISO | FAM3D (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21822266 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | schizophrenia | | ISO | FAM3D (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21822266 | |
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# | Reference Title | Reference Citation |
1. | Electronic Transfer of Homolog Data | MGD and Homologene mouse data transfer |
2. | Mouse MP Annotation Import Pipeline | RGD automated import pipeline |
3. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
4. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:9032278 | PMID:10349636 | PMID:11042159 | PMID:11076861 | PMID:11125038 | PMID:11217851 | PMID:12160727 | PMID:12466851 | PMID:12477932 | PMID:15489334 | PMID:16141072 | PMID:16141073 |
PMID:16602821 | PMID:20562862 | PMID:21267068 | PMID:21677750 | PMID:21873635 | PMID:22226334 | PMID:29853563 | PMID:33219235 | PMID:37301198 | PMID:37328068 | PMID:37454871 |
Fam3d (Mus musculus - house mouse) |
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FAM3D (Homo sapiens - human) |
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Fam3d (Rattus norvegicus - Norway rat) |
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Fam3d (Chinchilla lanigera - long-tailed chinchilla) |
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FAM3D (Pan paniscus - bonobo/pygmy chimpanzee) |
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FAM3D (Canis lupus familiaris - dog) |
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Fam3d (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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FAM3D (Sus scrofa - pig) |
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FAM3D (Chlorocebus sabaeus - green monkey) |
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Fam3d (Heterocephalus glaber - naked mole-rat) |
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Variants in Fam3d
899 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
AV067083 |
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RefSeq Transcripts | NM_146050 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_006517948 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006517949 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006517950 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006517951 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006517952 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006517953 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006517954 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006517955 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_011244736 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AK009397 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK010206 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC024504 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC024532 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC024542 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC024636 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC034193 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH466579 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CT025547 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
U72677 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000022269 ⟹ ENSMUSP00000022269 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000224529 ⟹ ENSMUSP00000153041 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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RefSeq Acc Id: | NM_146050 ⟹ NP_666162 | ||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006517948 ⟹ XP_006518011 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006517949 ⟹ XP_006518012 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006517950 ⟹ XP_006518013 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006517951 ⟹ XP_006518014 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006517952 ⟹ XP_006518015 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006517953 ⟹ XP_006518016 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006517954 ⟹ XP_006518017 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006517955 ⟹ XP_006518018 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_011244736 ⟹ XP_011243038 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_666162 | (Get FASTA) | NCBI Sequence Viewer |
XP_006518011 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006518012 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006518013 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006518014 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006518015 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006518016 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006518017 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006518018 | (Get FASTA) | NCBI Sequence Viewer | |
XP_011243038 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAB51037 | (Get FASTA) | NCBI Sequence Viewer |
AAH24504 | (Get FASTA) | NCBI Sequence Viewer | |
AAH24532 | (Get FASTA) | NCBI Sequence Viewer | |
AAH24542 | (Get FASTA) | NCBI Sequence Viewer | |
AAH24636 | (Get FASTA) | NCBI Sequence Viewer | |
AAH34193 | (Get FASTA) | NCBI Sequence Viewer | |
BAC25286 | (Get FASTA) | NCBI Sequence Viewer | |
EDL20591 | (Get FASTA) | NCBI Sequence Viewer | |
EDL20592 | (Get FASTA) | NCBI Sequence Viewer | |
EDL20593 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSMUSP00000022269 | ||
ENSMUSP00000022269.6 | |||
ENSMUSP00000153041.2 | |||
GenBank Protein | P97805 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_666162 ⟸ NM_146050 |
- Peptide Label: | precursor |
- UniProtKB: | Q8R009 (UniProtKB/Swiss-Prot), Q8R1F2 (UniProtKB/Swiss-Prot), P97805 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006518013 ⟸ XM_006517950 |
- Peptide Label: | isoform X3 |
- UniProtKB: | Q8R009 (UniProtKB/Swiss-Prot), Q8R1F2 (UniProtKB/Swiss-Prot), P97805 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006518017 ⟸ XM_006517954 |
- Peptide Label: | isoform X3 |
- UniProtKB: | Q8R009 (UniProtKB/Swiss-Prot), Q8R1F2 (UniProtKB/Swiss-Prot), P97805 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006518014 ⟸ XM_006517951 |
- Peptide Label: | isoform X3 |
- UniProtKB: | Q8R009 (UniProtKB/Swiss-Prot), Q8R1F2 (UniProtKB/Swiss-Prot), P97805 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006518015 ⟸ XM_006517952 |
- Peptide Label: | isoform X3 |
- UniProtKB: | Q8R009 (UniProtKB/Swiss-Prot), Q8R1F2 (UniProtKB/Swiss-Prot), P97805 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006518016 ⟸ XM_006517953 |
- Peptide Label: | isoform X3 |
- UniProtKB: | Q8R009 (UniProtKB/Swiss-Prot), Q8R1F2 (UniProtKB/Swiss-Prot), P97805 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006518018 ⟸ XM_006517955 |
- Peptide Label: | isoform X4 |
- Sequence: |
RefSeq Acc Id: | XP_006518011 ⟸ XM_006517948 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | XP_006518012 ⟸ XM_006517949 |
- Peptide Label: | isoform X2 |
- Sequence: |
RefSeq Acc Id: | XP_011243038 ⟸ XM_011244736 |
- Peptide Label: | isoform X3 |
- UniProtKB: | Q8R009 (UniProtKB/Swiss-Prot), Q8R1F2 (UniProtKB/Swiss-Prot), P97805 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000153041 ⟸ ENSMUST00000224529 |
RefSeq Acc Id: | ENSMUSP00000022269 ⟸ ENSMUST00000022269 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-P97805-F1-model_v2 | AlphaFold | P97805 | 1-223 | view protein structure |
RGD ID: | 8681490 | ||||||||
Promoter ID: | EPDNEW_M18776 | ||||||||
Type: | initiation region | ||||||||
Name: | Oit1_1 | ||||||||
Description: | Mus musculus oncoprotein induced transcript 1 , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1201784 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000021749 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Transcript | ENSMUST00000022269 | ENTREZGENE |
ENSMUST00000022269.7 | UniProtKB/Swiss-Prot | |
ENSMUST00000224529.2 | UniProtKB/TrEMBL | |
InterPro | FAM3 | UniProtKB/Swiss-Prot |
ILEI/PANDER_dom | UniProtKB/Swiss-Prot | |
ILEI_FAM3C | UniProtKB/Swiss-Prot | |
KEGG Report | mmu:18300 | UniProtKB/Swiss-Prot |
MGD | MGI:1201784 | ENTREZGENE |
NCBI Gene | 18300 | ENTREZGENE |
PANTHER | PTHR14592 | UniProtKB/Swiss-Prot |
PTHR14592:SF9 | UniProtKB/Swiss-Prot | |
Pfam | ILEI | UniProtKB/Swiss-Prot |
PhenoGen | Fam3d | PhenoGen |
PROSITE | GG_LECTIN | UniProtKB/Swiss-Prot |
UniProt | A0A286YCL0_MOUSE | UniProtKB/TrEMBL |
FAM3D_MOUSE | UniProtKB/Swiss-Prot, ENTREZGENE | |
Q8R009 | ENTREZGENE | |
Q8R1F2 | ENTREZGENE | |
UniProt Secondary | Q8R009 | UniProtKB/Swiss-Prot |
Q8R1F2 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2020-12-28 | Fam3d | FAM3 metabolism regulating signaling molecule D | Oit1 | oncoprotein induced transcript 1 | Symbol and/or name updated | 27372883 | PROVISIONAL |