Lrrn2 (leucine rich repeat protein 2, neuronal) - Rat Genome Database

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Gene: Lrrn2 (leucine rich repeat protein 2, neuronal) Mus musculus
Analyze
Symbol: Lrrn2
Name: leucine rich repeat protein 2, neuronal
RGD ID: 1313535
MGI Page MGI
Description: Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including adrenal medulla; gut; nervous system; optic cup; and urinary system. Orthologous to human LRRN2 (leucine rich repeat neuronal 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730406J09Rik; leucine-rich repeat neuronal protein 2; NL; NLRR-2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,808,093 - 132,867,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,808,011 - 132,867,743 (+)EnsemblGRCm39 Ensembl
GRCm381132,880,355 - 132,940,005 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,880,273 - 132,940,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv371134,776,932 - 134,836,582 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361134,707,901 - 134,767,505 (+)NCBIMGSCv36mm8
Celera1135,489,048 - 135,548,797 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.69NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8717337   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15893969   PMID:16141072   PMID:16141073   PMID:16183862   PMID:16602821   PMID:17145500  
PMID:18848646   PMID:20562862   PMID:21267068   PMID:21677750   PMID:21873635   PMID:25826454   PMID:37196079  


Genomics

Comparative Map Data
Lrrn2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,808,093 - 132,867,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,808,011 - 132,867,743 (+)EnsemblGRCm39 Ensembl
GRCm381132,880,355 - 132,940,005 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,880,273 - 132,940,005 (+)EnsemblGRCm38mm10GRCm38
MGSCv371134,776,932 - 134,836,582 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361134,707,901 - 134,767,505 (+)NCBIMGSCv36mm8
Celera1135,489,048 - 135,548,797 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map157.69NCBI
LRRN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381204,617,170 - 204,685,738 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1204,617,170 - 204,685,738 (-)EnsemblGRCh38hg38GRCh38
GRCh371204,586,298 - 204,654,866 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361202,852,924 - 202,921,220 (-)NCBINCBI36Build 36hg18NCBI36
Celera1177,721,461 - 177,789,729 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1175,751,543 - 175,819,947 (-)NCBIHuRef
CHM1_11206,009,687 - 206,077,989 (-)NCBICHM1_1
T2T-CHM13v2.01203,881,574 - 203,950,138 (-)NCBIT2T-CHM13v2.0
Lrrn2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81346,874,048 - 46,934,544 (+)NCBIGRCr8
mRatBN7.21344,321,944 - 44,382,454 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1344,321,364 - 44,382,482 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1346,928,913 - 46,989,187 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01348,217,024 - 48,277,296 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01345,477,737 - 45,538,047 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01349,660,356 - 49,730,275 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1349,660,356 - 49,730,275 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01354,735,286 - 54,801,198 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41345,835,522 - 45,837,774 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11345,849,460 - 45,852,366 (+)NCBI
Celera1344,656,211 - 44,716,704 (+)NCBICelera
Cytogenetic Map13q13NCBI
Lrrn2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540640,442,680 - 40,499,945 (-)NCBIChiLan1.0ChiLan1.0
LRRN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2144,692,157 - 44,760,682 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1144,657,361 - 44,729,059 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01180,208,932 - 180,287,250 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11184,506,640 - 184,554,276 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1184,507,321 - 184,509,462 (-)Ensemblpanpan1.1panPan2
LRRN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1381,163,974 - 1,218,069 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl381,164,664 - 1,166,802 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha381,258,548 - 1,320,041 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0381,159,406 - 1,220,934 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1381,156,215 - 1,217,700 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0381,547,119 - 1,608,604 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0381,747,852 - 1,809,364 (-)NCBIUU_Cfam_GSD_1.0
Lrrn2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934470,975,220 - 70,979,318 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936567210,862 - 214,526 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl965,279,485 - 65,352,945 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1965,279,480 - 65,352,792 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2971,613,109 - 71,666,271 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12524,660,036 - 24,727,653 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2524,724,833 - 24,726,974 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605525,417,767 - 25,485,807 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrn2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248076,376,669 - 6,436,809 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lrrn2
3135 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:541
Count of miRNA genes:344
Interacting mature miRNAs:400
Transcripts:ENSMUST00000027706, ENSMUST00000159088
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
27226714Metcl1_mmetatarsal-calcaneal length 1, 5 week (mouse)1121727729139727738Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112131005146131085Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
13524520Bodwtq1_mbody wweight QTL 1 (mouse)1131191160135621161Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121727729153875746Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121727729153775746Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
1301536Pbbcp1_mperipheral blood B cell percentage 1 (mouse)Not determined199507660133507845Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110553179144553298Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
13513913Heal51_mwound healing/ regeneration 51 (mouse)1131780648135499606Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110553179144553298Mouse

Markers in Region
RH142373  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381132,939,761 - 132,939,926UniSTSGRCm38
MGSCv371134,836,338 - 134,836,503UniSTSGRCm37
Celera1135,548,553 - 135,548,718UniSTS
Cytogenetic Map1E4UniSTS
UniSTS:224292  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381132,879,468 - 132,879,574UniSTSGRCm38
MGSCv371134,776,045 - 134,776,151UniSTSGRCm37
Celera1135,488,161 - 135,488,267UniSTS
Cytogenetic Map1E4UniSTS
Lrrn2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381132,937,358 - 132,938,249UniSTSGRCm38
MGSCv371134,833,935 - 134,834,826UniSTSGRCm37
Celera1135,546,150 - 135,547,041UniSTS
Cytogenetic Map1E4UniSTS
cM Map1 UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000027706   ⟹   ENSMUSP00000027706
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,808,011 - 132,867,743 (+)Ensembl
GRCm38.p6 Ensembl1132,880,273 - 132,940,005 (+)Ensembl
Ensembl Acc Id: ENSMUST00000159088
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,808,093 - 132,864,888 (+)Ensembl
GRCm38.p6 Ensembl1132,880,355 - 132,937,150 (+)Ensembl
RefSeq Acc Id: NM_010732   ⟹   NP_034862
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,808,093 - 132,867,743 (+)NCBI
GRCm381132,880,355 - 132,940,005 (+)ENTREZGENE
MGSCv371134,776,932 - 134,836,582 (+)RGD
Celera1135,489,048 - 135,548,797 (+)RGD
cM Map1 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_034862 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH56458 (Get FASTA)   NCBI Sequence Viewer  
  AAQ74241 (Get FASTA)   NCBI Sequence Viewer  
  BAA08373 (Get FASTA)   NCBI Sequence Viewer  
  EDL39667 (Get FASTA)   NCBI Sequence Viewer  
  EDL39668 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000027706
  ENSMUSP00000027706.4
RefSeq Acc Id: NP_034862   ⟸   NM_010732
- Peptide Label: precursor
- UniProtKB: Q6PHP6 (UniProtKB/TrEMBL),   Q6US92 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000027706   ⟸   ENSMUST00000027706
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PHP6-F1-model_v2 AlphaFold Q6PHP6 1-730 view protein structure

Promoters
RGD ID:6874936
Promoter ID:EPDNEW_M919
Type:multiple initiation site
Name:Lrrn2_1
Description:Mus musculus leucine rich repeat protein 2, neuronal , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M920  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381132,880,355 - 132,880,415EPDNEW
RGD ID:6874938
Promoter ID:EPDNEW_M920
Type:single initiation site
Name:Lrrn2_2
Description:Mus musculus leucine rich repeat protein 2, neuronal , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M919  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381132,933,066 - 132,933,126EPDNEW
RGD ID:6818046
Promoter ID:MM_KWN:2088
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000072558,   OTTMUST00000072559
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361134,776,841 - 134,777,341 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:106037 AgrOrtholog
Ensembl Genes ENSMUSG00000026443 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027706 ENTREZGENE
  ENSMUST00000027706.4 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  FN3_dom UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  L_dom-like UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  SLRP UniProtKB/TrEMBL
KEGG Report mmu:16980 UniProtKB/TrEMBL
MGD MGI:106037 ENTREZGENE
NCBI Gene 16980 ENTREZGENE
PANTHER AGAP008170-PA UniProtKB/TrEMBL
  IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS UniProtKB/TrEMBL
  LEUCINE-RICH REPEAT NEURONAL PROTEIN 2 UniProtKB/TrEMBL
  LRRNT DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam I-set UniProtKB/TrEMBL
  LRR_1 UniProtKB/TrEMBL
  LRR_8 UniProtKB/TrEMBL
PhenoGen Lrrn2 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
  LRR UniProtKB/TrEMBL
SMART IGc2 UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt Q61974_MOUSE UniProtKB/TrEMBL
  Q6PHP6 ENTREZGENE, UniProtKB/TrEMBL
  Q6US92 ENTREZGENE, UniProtKB/TrEMBL