Trim11 (tripartite motif-containing 11) - Rat Genome Database

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Gene: Trim11 (tripartite motif-containing 11) Mus musculus
Analyze
Symbol: Trim11
Name: tripartite motif-containing 11
RGD ID: 1313483
MGI Page MGI
Description: Enables protein domain specific binding activity and ubiquitin protein ligase activity. Involved in several processes, including negative regulation of viral release from host cell; negative regulation of viral transcription; and regulation of viral entry into host cell. Located in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; hemolymphoid system gland; liver; nervous system; and urinary system. Orthologous to human TRIM11 (tripartite motif containing 11); INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,3',4,4',5-Pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: E3 ubiquitin-protein ligase TRIM11; RING-type E3 ubiquitin transferase TRIM11; tripartite motif protein 11; tripartite motif-containing protein 11
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,865,054 - 58,882,288 (+)NCBIGRCm39mm39
GRCm39 Ensembl1158,868,919 - 58,882,284 (+)Ensembl
GRCm381158,973,726 - 58,991,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,978,093 - 58,991,458 (+)EnsemblGRCm38mm10GRCm38
MGSCv371158,791,618 - 58,804,960 (+)NCBIGRCm37mm9NCBIm37
MGSCv361158,794,311 - 58,807,653 (+)NCBImm8
Celera1163,744,428 - 63,757,877 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA,ISO)
cytosol  (ISO)
nucleoplasm  (ISO)
nucleus  (IDA)

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12670303   PMID:15489334   PMID:15782199   PMID:16098226  
PMID:16141072   PMID:16141073   PMID:18248090   PMID:18275850   PMID:18287559   PMID:18574153   PMID:18628401   PMID:21267068   PMID:21873635   PMID:23675467   PMID:27480124   PMID:27498865  
PMID:32325033  


Genomics

Comparative Map Data
Trim11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391158,865,054 - 58,882,288 (+)NCBIGRCm39mm39
GRCm39 Ensembl1158,868,919 - 58,882,284 (+)Ensembl
GRCm381158,973,726 - 58,991,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1158,978,093 - 58,991,458 (+)EnsemblGRCm38mm10GRCm38
MGSCv371158,791,618 - 58,804,960 (+)NCBIGRCm37mm9NCBIm37
MGSCv361158,794,311 - 58,807,653 (+)NCBImm8
Celera1163,744,428 - 63,757,877 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
TRIM11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1228,393,673 - 228,406,835 (-)EnsemblGRCh38hg38GRCh38
GRCh381228,393,672 - 228,406,835 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371228,581,377 - 228,594,536 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361226,648,000 - 226,661,140 (-)NCBINCBI36hg18NCBI36
Build 341224,888,113 - 224,901,252NCBI
Celera1201,771,344 - 201,784,479 (-)NCBI
Cytogenetic Map1q42.13NCBI
HuRef1199,095,985 - 199,109,126 (-)NCBIHuRef
CHM1_11229,853,700 - 229,866,840 (-)NCBICHM1_1
Trim11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21043,758,305 - 43,771,138 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1043,758,354 - 43,771,138 (+)Ensembl
Rnor_6.01045,322,199 - 45,335,030 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1045,322,248 - 45,335,030 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01045,078,796 - 45,091,446 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41045,270,583 - 45,283,954 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11045,284,255 - 45,294,925 (+)NCBI
Celera1043,024,655 - 43,037,489 (+)NCBICelera
Cytogenetic Map10q22NCBI
Trim11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955581114,750 - 125,143 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955581114,750 - 123,410 (+)NCBIChiLan1.0ChiLan1.0
TRIM11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11209,006,979 - 209,019,994 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1209,006,979 - 209,019,994 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01203,795,924 - 203,809,703 (-)NCBIMhudiblu_PPA_v0panPan3
TRIM11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.114640,375 - 647,427 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha14511,392 - 518,438 (-)NCBI
ROS_Cfam_1.014356,380 - 363,429 (+)NCBI
UMICH_Zoey_3.114543,563 - 550,609 (+)NCBI
UNSW_CanFamBas_1.014304,219 - 311,263 (+)NCBI
UU_Cfam_GSD_1.014313,608 - 320,656 (+)NCBI
Trim11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721387,076,008 - 87,085,815 (+)NCBI
SpeTri2.0NW_00493713511,350 - 21,235 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIM11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl251,733,180 - 51,743,256 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1251,729,333 - 51,743,256 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIM11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1251,322,817 - 1,336,535 (+)NCBI
ChlSab1.1 Ensembl251,323,528 - 1,335,504 (+)Ensembl
Vero_WHO_p1.0NW_0236660551,201,555 - 1,215,589 (+)NCBI
Trim11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249371,100,297 - 1,109,017 (-)NCBI

Position Markers
RH126084  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381158,991,219 - 58,991,422UniSTSGRCm38
MGSCv371158,804,721 - 58,804,924UniSTSGRCm37
Celera1163,757,638 - 63,757,841UniSTS
Cytogenetic Map11B2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11330000060800000Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11330000063000000Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11890000061500000Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112588179959881914Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112827504662275149Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112867832062678320Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112881775462817873Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113111738265117382Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113220975066209867Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113787775360511890Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5417484463428696Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115417484467187585Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115419011565213015Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5539415972319101Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
10053682Eae45_mexperimental allergic encephalomyelitis susceptibility 45 (mouse)Not determined115859972974863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1426
Count of miRNA genes:549
Interacting mature miRNAs:653
Transcripts:ENSMUST00000093061, ENSMUST00000108809, ENSMUST00000108810
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_053168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF220124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK051266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000093061   ⟹   ENSMUSP00000090749
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1158,868,942 - 58,882,283 (+)Ensembl
GRCm38.p6 Ensembl1158,978,116 - 58,991,457 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108809   ⟹   ENSMUSP00000104437
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1158,868,919 - 58,882,281 (+)Ensembl
GRCm38.p6 Ensembl1158,978,093 - 58,991,455 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108810   ⟹   ENSMUSP00000104438
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1158,868,941 - 58,882,284 (+)Ensembl
GRCm38.p6 Ensembl1158,978,115 - 58,991,458 (+)Ensembl
RefSeq Acc Id: NM_001290988   ⟹   NP_001277917
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391158,868,919 - 58,882,288 (+)NCBI
GRCm381158,978,093 - 58,991,462 (+)NCBI
Celera1163,744,405 - 63,757,881 (+)NCBI
Sequence:
RefSeq Acc Id: NM_053168   ⟹   NP_444398
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391158,868,919 - 58,882,288 (+)NCBI
GRCm381158,978,093 - 58,991,462 (+)NCBI
MGSCv371158,791,618 - 58,804,960 (+)RGD
Celera1163,744,405 - 63,757,881 (+)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534579   ⟹   XP_006534642
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391158,865,054 - 58,874,228 (+)NCBI
GRCm381158,973,726 - 58,983,402 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011249335   ⟹   XP_011247637
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391158,873,603 - 58,882,284 (+)NCBI
GRCm381158,982,401 - 58,991,458 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246446   ⟹   XP_030102306
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391158,872,084 - 58,882,284 (+)NCBI
GRCm381158,978,119 - 58,991,458 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157111   ⟹   XP_036013004
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391158,865,054 - 58,874,228 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_444398   ⟸   NM_053168
- Peptide Label: isoform 2
- UniProtKB: Q99PQ2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534642   ⟸   XM_006534579
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001277917   ⟸   NM_001290988
- Peptide Label: isoform 1
- UniProtKB: Q99PQ2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011247637   ⟸   XM_011249335
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030102306   ⟸   XM_030246446
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000090749   ⟸   ENSMUST00000093061
RefSeq Acc Id: ENSMUSP00000104437   ⟸   ENSMUST00000108809
RefSeq Acc Id: ENSMUSP00000104438   ⟸   ENSMUST00000108810
RefSeq Acc Id: XP_036013004   ⟸   XM_036157111
- Peptide Label: isoform X1
Protein Domains
B box-type   B30.2/SPRY   RING-type

Promoters
RGD ID:6820506
Promoter ID:MM_KWN:7612
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000108809,   NM_053168,   OTTMUST00000012790,   OTTMUST00000012794,   UC007JCX.1,   UC007JCY.1,   UC007JCZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361158,791,531 - 58,792,182 (-)MPROMDB
RGD ID:6846923
Promoter ID:MM_ACW:7554
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:TRIM11.HSEP07,   TRIM11.JSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361158,795,436 - 58,795,936 (+)MPROMDB
RGD ID:8674786
Promoter ID:EPDNEW_M15424
Type:initiation region
Name:Trim11_1
Description:Mus musculus tripartite motif-containing 11 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381158,978,101 - 58,978,161EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2137355 AgrOrtholog
Ensembl Genes ENSMUSG00000020455 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000090749 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000104437 UniProtKB/TrEMBL
  ENSMUSP00000104438 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000093061 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000108809 UniProtKB/TrEMBL
  ENSMUST00000108810 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot
  3.30.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/Swiss-Prot
  B30.2/SPRY_sf UniProtKB/Swiss-Prot
  Butyrophylin_SPRY UniProtKB/Swiss-Prot
  ConA-like_dom_sf UniProtKB/Swiss-Prot
  PRY UniProtKB/Swiss-Prot
  SPRY_dom UniProtKB/Swiss-Prot
  Znf_B-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:94091 UniProtKB/Swiss-Prot
MGD MGI:2137355 ENTREZGENE
NCBI Gene 94091 ENTREZGENE
Pfam PRY UniProtKB/Swiss-Prot
  SPRY UniProtKB/Swiss-Prot
  zf-B_box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trim11 PhenoGen
PRINTS BUTYPHLNCDUF UniProtKB/Swiss-Prot
PROSITE B302_SPRY UniProtKB/Swiss-Prot
  ZF_BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BBOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRY UniProtKB/Swiss-Prot
  RING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49899 UniProtKB/Swiss-Prot
UniProt A2AB83_MOUSE UniProtKB/TrEMBL
  Q99PQ2 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A2A868 UniProtKB/Swiss-Prot
  A2AB84 UniProtKB/Swiss-Prot
  Q3TCL5 UniProtKB/Swiss-Prot
  Q8VDX5 UniProtKB/Swiss-Prot