Cpt1c (carnitine palmitoyltransferase 1c) - Rat Genome Database

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Gene: Cpt1c (carnitine palmitoyltransferase 1c) Mus musculus
Analyze
Symbol: Cpt1c
Name: carnitine palmitoyltransferase 1c
RGD ID: 1313383
MGI Page MGI
Description: Predicted to enable carnitine O-palmitoyltransferase activity. Involved in regulation of postsynaptic membrane neurotransmitter receptor levels. Located in axon; dendrite; and endoplasmic reticulum. Part of AMPA glutamate receptor complex. Is active in endoplasmic reticulum membrane; glutamatergic synapse; and postsynapse. Is expressed in several structures, including alimentary system; genitourinary system; heart; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 73. Orthologous to human CPT1C (carnitine palmitoyltransferase 1C).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6530437J22Rik; 9630004I06Rik; carnitine O-palmitoyltransferase 1, brain isoform; carnitine O-palmitoyltransferase I, brain isoform; carnitine palmitoyltransferase 1, brain; CPT I-C; CPT IC; CPT1-B; CPTI-B; MGC101932
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,607,907 - 44,624,304 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,608,796 - 44,624,275 (-)EnsemblGRCm39 Ensembl
GRCm38744,958,483 - 44,974,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,959,372 - 44,974,851 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,214,743 - 52,230,144 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,827,415 - 44,842,816 (-)NCBIMGSCv36mm8
Celera740,410,981 - 40,426,356 (-)NCBICelera
Cytogenetic Map7B3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12376098   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14681479   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:16651524   PMID:17559810   PMID:18248603   PMID:18614015   PMID:18799693   PMID:19224198   PMID:21267068   PMID:21576264   PMID:21592121   PMID:21593415  
PMID:21677750   PMID:21873635   PMID:21961029   PMID:22539351   PMID:22632720   PMID:23098614   PMID:23412344   PMID:23493572   PMID:23973755   PMID:24194600   PMID:25751282   PMID:26338711  
PMID:26577678   PMID:28472467   PMID:28675162   PMID:30135643   PMID:30448371   PMID:30550785   PMID:32931550   PMID:33444462   PMID:34424821   PMID:35478964   PMID:36417873  


Genomics

Comparative Map Data
Cpt1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,607,907 - 44,624,304 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,608,796 - 44,624,275 (-)EnsemblGRCm39 Ensembl
GRCm38744,958,483 - 44,974,880 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl744,959,372 - 44,974,851 (-)EnsemblGRCm38mm10GRCm38
MGSCv37752,214,743 - 52,230,144 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36744,827,415 - 44,842,816 (-)NCBIMGSCv36mm8
Celera740,410,981 - 40,426,356 (-)NCBICelera
Cytogenetic Map7B3NCBI
CPT1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,690,662 - 49,713,731 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1949,690,898 - 49,713,731 (+)EnsemblGRCh38hg38GRCh38
GRCh371950,194,105 - 50,216,988 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,886,219 - 54,908,800 (+)NCBINCBI36Build 36hg18NCBI36
Build 341954,886,218 - 54,908,800NCBI
Celera1947,063,733 - 47,086,445 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,571,009 - 46,594,220 (+)NCBIHuRef
CHM1_11950,196,164 - 50,218,780 (+)NCBICHM1_1
T2T-CHM13v2.01952,690,916 - 52,713,875 (+)NCBIT2T-CHM13v2.0
Cpt1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2195,442,814 - 95,457,347 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,442,817 - 95,457,342 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1100,828,216 - 100,842,682 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01109,300,881 - 109,315,348 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01102,591,275 - 102,605,741 (-)NCBIRnor_WKY
Rnor_6.01100,955,094 - 100,970,579 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1100,955,095 - 100,969,560 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,019,483 - 102,034,110 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,432,958 - 95,447,485 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,511,195 - 95,524,711 (-)NCBI
Celera189,704,373 - 89,718,810 (-)NCBICelera
Cytogenetic Map1q22NCBI
Cpt1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555591,187,858 - 1,203,523 (-)NCBIChiLan1.0ChiLan1.0
CPT1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11955,625,794 - 55,647,520 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,626,831 - 55,647,394 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01946,705,711 - 46,727,996 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CPT1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11106,826,207 - 106,847,117 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1106,826,303 - 106,846,446 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,410,071 - 106,430,708 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,347,891 - 107,368,574 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,342,847 - 107,373,187 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,020,193 - 107,040,828 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,662,212 - 106,682,894 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,502,688 - 107,523,376 (-)NCBIUU_Cfam_GSD_1.0
Cpt1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,886,951 - 21,908,096 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,505,106 - 3,529,678 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049366643,505,146 - 3,526,286 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPT1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,731,557 - 54,749,248 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,732,701 - 54,747,706 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,462,134 - 50,476,782 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CPT1C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,865,706 - 42,885,359 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl642,866,921 - 42,885,185 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607322,810,843 - 22,833,543 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cpt1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,577,620 - 4,591,550 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,578,400 - 4,592,933 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:249
Count of miRNA genes:227
Interacting mature miRNAs:244
Transcripts:ENSMUST00000063761
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
25394571Skmw59_mskeletal muscle weight 59, TA (mouse)74422494344675382Mouse
25394574Skmw61_mskeletal muscle weight 61, EDL (mouse)74422494344675382Mouse
25394572Skmw60_mskeletal muscle weight 60, gastroc (mouse)74455116444702447Mouse

Markers in Region
Cpt1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7B2UniSTS
cM Map7 UniSTS
D7Dcr15  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,968,186 - 44,968,286UniSTSGRCm38
MGSCv37752,223,556 - 52,223,656UniSTSGRCm37
Cytogenetic Map7B2UniSTS
cM Map7 UniSTS
RH139577  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38744,959,616 - 44,960,100UniSTSGRCm38
MGSCv37752,214,986 - 52,215,470UniSTSGRCm37
Celera740,411,224 - 40,411,708UniSTS
Cytogenetic Map7B2UniSTS
Cpt1c  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7B2UniSTS
cM Map7 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011250918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001778016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003946598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003946599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_882037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_882038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_882039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC155806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF320000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU758114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN842042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000063761   ⟹   ENSMUSP00000069539
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,608,797 - 44,624,275 (-)Ensembl
GRCm38.p6 Ensembl744,959,373 - 44,974,851 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211862   ⟹   ENSMUSP00000148366
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,616,287 - 44,622,501 (-)Ensembl
GRCm38.p6 Ensembl744,966,863 - 44,973,077 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211901
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,608,796 - 44,617,155 (-)Ensembl
GRCm38.p6 Ensembl744,959,372 - 44,967,731 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212217
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,609,550 - 44,610,745 (-)Ensembl
GRCm38.p6 Ensembl744,960,126 - 44,961,321 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212255   ⟹   ENSMUSP00000148456
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,619,937 - 44,624,202 (-)Ensembl
GRCm38.p6 Ensembl744,970,513 - 44,974,778 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212836   ⟹   ENSMUSP00000148815
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,608,796 - 44,624,199 (-)Ensembl
GRCm38.p6 Ensembl744,959,372 - 44,974,775 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212890
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,609,801 - 44,615,611 (-)Ensembl
GRCm38.p6 Ensembl744,960,377 - 44,966,187 (-)Ensembl
RefSeq Acc Id: NM_001252470   ⟹   NP_001239399
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,275 (-)NCBI
GRCm38744,959,372 - 44,974,851 (-)NCBI
Celera740,410,980 - 40,426,433 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001357670   ⟹   NP_001344599
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,275 (-)NCBI
GRCm38744,959,372 - 44,974,851 (-)NCBI
Sequence:
RefSeq Acc Id: NM_153679   ⟹   NP_710146
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,275 (-)NCBI
GRCm38744,959,372 - 44,974,851 (-)NCBI
MGSCv37752,214,743 - 52,230,144 (-)RGD
Celera740,410,980 - 40,426,433 (-)ENTREZGENE
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011250917   ⟹   XP_011249219
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,619,966 (-)NCBI
GRCm38744,959,372 - 44,970,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011250918   ⟹   XP_011249220
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,619,966 (-)NCBI
GRCm38744,959,372 - 44,970,542 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153566   ⟹   XP_036009459
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,264 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153567   ⟹   XP_036009460
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,620,782 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001778010
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,607,934 - 44,624,304 (-)NCBI
GRCm38744,958,510 - 44,974,880 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001778011
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,289 (-)NCBI
GRCm38744,959,372 - 44,974,845 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001778012
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,289 (-)NCBI
GRCm38744,959,372 - 44,974,845 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001778013
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,289 (-)NCBI
GRCm38744,959,372 - 44,974,845 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001778014
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,289 (-)NCBI
GRCm38744,959,372 - 44,974,845 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001778015
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,289 (-)NCBI
GRCm38744,959,372 - 44,974,845 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001778016
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,289 (-)NCBI
GRCm38744,959,372 - 44,974,845 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003946598
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,289 (-)NCBI
GRCm38744,959,372 - 44,974,845 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003946599
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,289 (-)NCBI
GRCm38744,959,372 - 44,974,845 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934218
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,289 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004934219
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,608,796 - 44,624,289 (-)NCBI
Sequence:
RefSeq Acc Id: XR_882037
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,607,907 - 44,624,289 (-)NCBI
GRCm38744,958,483 - 44,974,845 (-)NCBI
Sequence:
RefSeq Acc Id: XR_882038
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,607,907 - 44,624,289 (-)NCBI
GRCm38744,958,483 - 44,974,845 (-)NCBI
Sequence:
RefSeq Acc Id: XR_882039
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,607,907 - 44,624,289 (-)NCBI
GRCm38744,958,483 - 44,974,845 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_710146   ⟸   NM_153679
- Peptide Label: isoform 1
- UniProtKB: Q8C071 (UniProtKB/Swiss-Prot),   Q8BGD5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001239399   ⟸   NM_001252470
- Peptide Label: isoform 1
- UniProtKB: Q8C071 (UniProtKB/Swiss-Prot),   Q8BGD5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011249220   ⟸   XM_011250918
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011249219   ⟸   XM_011250917
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001344599   ⟸   NM_001357670
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000148366   ⟸   ENSMUST00000211862
RefSeq Acc Id: ENSMUSP00000148815   ⟸   ENSMUST00000212836
RefSeq Acc Id: ENSMUSP00000148456   ⟸   ENSMUST00000212255
RefSeq Acc Id: ENSMUSP00000069539   ⟸   ENSMUST00000063761
RefSeq Acc Id: XP_036009459   ⟸   XM_036153566
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036009460   ⟸   XM_036153567
- Peptide Label: isoform X3
Protein Domains
Carn_acyltransf

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BGD5-F1-model_v2 AlphaFold Q8BGD5 1-798 view protein structure

Promoters
RGD ID:8663929
Promoter ID:EPDNEW_M9995
Type:multiple initiation site
Name:Cpt1c_1
Description:Mus musculus carnitine palmitoyltransferase 1c , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38744,974,800 - 44,974,860EPDNEW
RGD ID:6840876
Promoter ID:MM_KWN:50321
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC009GSA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,216,786 - 52,217,287 (-)MPROMDB
RGD ID:6840877
Promoter ID:MM_KWN:50322
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC009GSD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,220,636 - 52,222,237 (-)MPROMDB
RGD ID:6840317
Promoter ID:MM_KWN:50323
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:AK020101_6530437J22RIK
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,225,186 - 52,225,947 (+)MPROMDB
RGD ID:6848111
Promoter ID:MM_ACW:44471
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   MEF_B4,   MEF_B6
Transcripts:CPT1C.HSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,229,071 - 52,229,571 (-)MPROMDB
RGD ID:6840874
Promoter ID:MM_KWN:50324
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000007927,   UC009GSB.1,   UC009GSC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,229,811 - 52,230,937 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2446526 AgrOrtholog
Ensembl Genes ENSMUSG00000007783 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000069539 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000148366.2 UniProtKB/TrEMBL
  ENSMUSP00000148456.2 UniProtKB/TrEMBL
  ENSMUSP00000148815 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000063761 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000211862.2 UniProtKB/TrEMBL
  ENSMUST00000212255.2 UniProtKB/TrEMBL
  ENSMUST00000212836 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.275.20 UniProtKB/TrEMBL
  3.30.559.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.559.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Carn_acyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Carn_acyl_trans_N UniProtKB/TrEMBL
  CAT-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cho/carn_acyl_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cho/carn_acyl_trans_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CPT_N UniProtKB/Swiss-Prot
KEGG Report mmu:78070 UniProtKB/Swiss-Prot
MGD MGI:2446526 ENTREZGENE
NCBI Gene 78070 ENTREZGENE
PANTHER PTHR22589 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Carn_acyltransf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CPT_N UniProtKB/Swiss-Prot
PhenoGen Cpt1c PhenoGen
PROSITE ACYLTRANSF_C_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACYLTRANSF_C_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1D5RLH1_MOUSE UniProtKB/TrEMBL
  A0A1D5RLP8_MOUSE UniProtKB/TrEMBL
  CPT1C_MOUSE UniProtKB/Swiss-Prot
  Q80UY0_MOUSE UniProtKB/TrEMBL
  Q8BGD5 ENTREZGENE
  Q8C071 ENTREZGENE
  Q8CFB9_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q6NZF8 UniProtKB/Swiss-Prot
  Q8C071 UniProtKB/Swiss-Prot