Best2 (bestrophin 2) - Rat Genome Database

Name: Best2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Best2 (bestrophin 2) Mus musculus

Analyze

Symbol:

Best2

Name:

bestrophin 2

RGD ID:

1313369

MGI Page

MGI

Description:

Exhibits chloride channel activity. Involved in chloride transmembrane transport; membrane depolarization; and sensory perception of smell. Localizes to chloride channel complex and cilium. Orthologous to human BEST2 (bestrophin 2); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; ethanol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

bestrophin-2; vitelliform macular dystrophy 2-like protein 1; Vmd2; Vmd2l1

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BEST2 (bestrophin 2)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Best2 (bestrophin 2)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Best2 (bestrophin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BEST2 (bestrophin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BEST2 (bestrophin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Best2 (bestrophin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BEST2 (bestrophin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	BEST2 (bestrophin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Best2 (bestrophin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Best2 (bestrophin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	BEST2 (bestrophin 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)
Danio rerio (zebrafish):	best2 (bestrophin 2)	Alliance	DIOPT (TreeFam\|ZFIN)
Drosophila melanogaster (fruit fly):	Best1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Drosophila melanogaster (fruit fly):	Best2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	Best3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	Best4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	best-13	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	best-14	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	best-23	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|Roundup)
Caenorhabditis elegans (roundworm):	best-24	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|Roundup)
Caenorhabditis elegans (roundworm):	best-3	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|Roundup)
Caenorhabditis elegans (roundworm):	best-4	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|Roundup)
Caenorhabditis elegans (roundworm):	best-7	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|Roundup)
Caenorhabditis elegans (roundworm):	best-9	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	best-1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	best-15	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	best-18	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	best-2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	best-20	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	best-21	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	best-22	Alliance	DIOPT (OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	best-10	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	best-11	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	best-12	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	best-26	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	best-6	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	best-5	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	best-8	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	best-17	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	best-16	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	C09B9.85	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	best-25	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	85,733,831 - 85,741,160 (-)	NCBI	GRCm39		mm39
GRCm38	8	85,007,202 - 85,014,531 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	85,007,202 - 85,014,531 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	87,531,101 - 87,538,307 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	87,897,307 - 87,903,696 (-)	NCBI			mm8
Celera	8	89,301,588 - 89,309,323 (-)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (ISO)

bisphenol F (ISO)

C60 fullerene (ISO)

dexamethasone (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

entinostat (ISO)

ethanol (EXP)

indometacin (ISO)

SB 431542 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chloride transmembrane transport (IMP)

chloride transport (IDA)

ion transport (IEA)

membrane depolarization (IDA)

sensory perception of smell (IEP)

Cellular Component

chloride channel complex (IDA)

cilium (IDA)

integral component of membrane (IEA)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

chloride channel activity (IDA)

protein binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal intraocular pressure (IAGP)

abnormal physiological response to xenobiotic (IAGP)

corneal deposits (IEA)

ocular hypotension (IAGP)

preweaning lethality, incomplete penetrance (IEA)

References

References - curated


1.	MGD data from the GO Consortium
2.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3.	RGD automated import pipeline
4.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12032738	PMID:12477932	PMID:15218265	PMID:15489334	PMID:16707793	PMID:16912113	PMID:18385076	PMID:18400985	PMID:18652850	PMID:18936135	PMID:19262692	PMID:19480000
PMID:19622610	PMID:20177062	PMID:20407206	PMID:21873635	PMID:21994938	PMID:27721237

Genomics

Comparative Map Data

Best2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	85,733,831 - 85,741,160 (-)	NCBI	GRCm39		mm39
GRCm38	8	85,007,202 - 85,014,531 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	85,007,202 - 85,014,531 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	87,531,101 - 87,538,307 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	87,897,307 - 87,903,696 (-)	NCBI			mm8
Celera	8	89,301,588 - 89,309,323 (-)	NCBI		Celera
Cytogenetic Map	8	C3	NCBI

BEST2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	12,751,702 - 12,758,458 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	12,751,791 - 12,758,458 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	12,862,600 - 12,869,272 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	12,724,407 - 12,730,272 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	19	12,724,471 - 12,730,269	NCBI
Celera	19	12,753,118 - 12,758,983 (+)	NCBI
Cytogenetic Map	19	p13.13	NCBI
HuRef	19	12,436,343 - 12,442,209 (+)	NCBI		HuRef
CHM1_1	19	12,863,870 - 12,869,735 (+)	NCBI		CHM1_1

Best2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	19	26,122,869 - 26,129,619 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	26,122,881 - 26,129,619 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	37,098,504 - 37,105,242 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	24,797,882 - 24,804,670 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	24,802,507 - 24,809,499 (+)	NCBI
Celera	19	22,699,556 - 22,706,219 (+)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

Best2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	31,846,047 - 31,851,962 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	31,846,053 - 31,851,628 (+)	NCBI	ChiLan1.0	ChiLan1.0

BEST2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	19	13,060,133 - 13,066,033 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	13,060,133 - 13,066,033 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	19	12,314,252 - 12,321,051 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

BEST2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	49,384,966 - 49,388,755 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	49,384,595 - 49,388,758 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Best2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936659	1,862,075 - 1,867,021 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BEST2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	66,243,100 - 66,247,782 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	66,242,820 - 66,248,908 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	66,472,047 - 66,478,116 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BEST2
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	11,438,981 - 11,447,952 (+)	NCBI
ChlSab1.1 Ensembl	6	11,441,380 - 11,448,629 (+)	Ensembl

Best2
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624901	372,181 - 377,411 (+)	NCBI

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	70305375	104305495	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	70305375	104305495	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71102903	105103009	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71136783	90202598	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71287817	123895615	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71287817	123895615	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	71396181	105396393	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73202495	107202598	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	73400000	126100000	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	75675517	109675623	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
1301808	Nhdlq1_m	non-HDL QTL 1 (mouse)			Not determined		8	75685348	109685497	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	75685348	109685497	Mouse
1301099	Cbm2_m	cerebellum weight 2 (mouse)			Not determined		8	78518613	112518703	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79082178	113082403	Mouse
12904012	Cfq10_m	conditioned fear QTL 10 (mouse)					8	80066775	89014359	Mouse
10755530	Wbc2_m	white blood cell count 2 (mouse)					8	81092664	115092664	Mouse
10755519	Wbc1_m	white blood cell count 1 (mouse)					8	81619151	115619151	Mouse
1301766	Desp1_m	despair 1 (mouse)			Not determined		8	84759576	118759741	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	193
Count of miRNA genes:	153
Interacting mature miRNAs:	166
Transcripts:	ENSMUST00000059072
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001130194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_052011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006530820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011248341	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC163703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY450428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC019528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC031186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC036157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC036163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY096795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000059072 ⟹ ENSMUSP00000053408

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	85,007,202 - 85,014,408 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000209322 ⟹ ENSMUSP00000147580

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	85,007,202 - 85,013,591 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000209421 ⟹ ENSMUSP00000147837

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	85,007,202 - 85,014,531 (-)	Ensembl

RefSeq Acc Id:

NM_001130194 ⟹ NP_001123666

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	85,733,831 - 85,741,037 (-)	NCBI
GRCm38	8	85,007,202 - 85,014,408 (-)	NCBI
MGSCv37	8	87,531,101 - 87,538,307 (-)	RGD
Celera	8	89,301,588 - 89,309,446 (-)	NCBI
cM Map	8		ENTREZGENE

Sequence:

show sequence

TCTCTGTCCCTTGTGTCCCTGTACGGCCACAGGCCCGGACCCAGGCTAAAACCTTCTCCATTGG
CCACACTGGCCAGGCGCAGCGATGACCGTCACCTACACAGCCAGAGTGGCGAATGCCCGCTTCG
GTGGCTTCTCGCAGCTGCTGCTGCTGTGGCGCGGAAGCATCTACAAGCTCCTGTGGCGAGAGCT
GTTATGTTTCCTGGGACTCTACATGGCACTAAGCGCCGCCTATCGCTTCTTACTGGCAGAAGAG
CAGAAGCGCTACTTCGAGAAGCTTGTCATATACTGCGACCAGTACGCCAGCCTCATCCCCGTCT
CTTTCGTACTTGGCTTCTACGTGACTCTGGTGGTGCATCGCTGGTGGAACCAGTACCTATGCAT
GCCTCTGCCGGACGCACTCATGTGCATAGTGGCTGGCACCGTGCATGGGCGAGACGATCGAGGC
CGCCTCTACCGGCGCACGCTCATGCGCTACGCAGGGCTCTCCGCGGTGCTGATCCTTCGTTCTG
TTAGCACAGCAGTCTTCAAACGGTTCCCCACTATAGACCACGTGGTCGAGGCTGGATTTATGAC
CCGAGAAGAGCGCAAGAAGTTCGAGAACTTGAATTCGTCCTACAACAAATACTGGGTGCCCTGC
GTATGGTTCTCGAGCCTGGCAGCGCAGGCGCGGCGAGAGGGGCGCATCCGCGACAACAGTGCCC
TAAAGTTGCTACTAGAGGAGCTGAATGTGTTTCGGAGCAAATGTGGGATGCTGTTTCACTACGA
CTGGATTAGCATACCCCTCGTCTACACCCAGGTAGTCACTATCGCAGTGTACAGCTACTTCTTG
GCTTGCCTCATCGGCCGTCAGTTCCTAGACCCTGCACAGGGCTACAAAGACCACACCCTGGACC
TATGCGTACCCATCTTCACCTTGCTGCAGTTCTTCTTCTACGCTGGCTGGCTTAAGGTAGCAGA
GCAGCTTATTAACCCTTTTGGGGAAGACGACGACGACTTTGAGACCAACTTTCTTATTGACCGC
AACTTCCAGGTGTCCATGCTAGCTGTAGATGAGATGTATGACGACTTGGCCATGCTGGAGAAAG
ATCTATACTGGGATGCAGCAGAAGCTCGCGCGCCCTACACCGCGGCCACCGCTTTCCTGCTTCA
GCAGCCCTCCTTCCAGGGCTCCACCTTTGATATAGCGCTGGCTAAAGAGGACATGCAGTTCCAG
CGGCTGGACGGCGTGGATGGCCCGCTGGGAGAGGTTCACGGGGACTTTCTGCAGCGCCTCCTGC
CGGCGGGGGCGGGTTCTGTGGGTCCGCTGGGGCGGCGCCTGTCGCTGTTAAGGCGTAAAAACAG
CTGCGTGTCAGAGGCCTCCACTGCTGCCAGCTGTGGCTGTGCAGGCGCGGCGGATGGCGGAGGC
GTTGAGTGCGGTTGTGGAGACCCATTGCTTGACCCCAGCCTGCGGGAGCCTGAGCTGGAGTCTC
CCGCATGTCCTGAGCCGCCTGCCCCCATCCCGGGGCCAACTCCTGAACCTTTTACCACCGTGTC
GATTCCGGGTCCTCGGGCTCCTGCGCCACCCTGGCTGCCCAGCCCTATTGGAGAGGAGGAAGAG
AGTCCGGCCTGAGATCCTGGGACCAGGACCCCTACGGACACCTACCTAATCCTGCACTAGACAT
GCTGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCGACCTACTCATTTTG
ACCAGCGGAATCTCCCACTGGGGCTGGTGGTTTTAGGGGTCCATATTCTCCCAGCTGTTGCTGC
TTCCCTCACCCCCAACCCCCCACTCTTTAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCT
GTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCCTTCGAGTGGAATTGACGGCCTA
CCTCATGAAATTGTGAGGATGAAAAAAATAAATAAAATAAAATAAACGAAA

hide sequence

RefSeq Acc Id:

NR_052011

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	85,733,831 - 85,741,160 (-)	NCBI
GRCm38	8	85,007,202 - 85,014,531 (-)	NCBI
Celera	8	89,301,588 - 89,309,446 (-)	NCBI

Sequence:

show sequence

CTGAGGCTGTAACTCAACTAAAGGGGATGGACTTGGGAGGGGCTGCCCACGCCCACTCCCCAGC
TCCTTCCCAAACAGTCTGGCTTCAGCCCCACCCAATACTGAAGACACCCTCCCTTTTAGTCTCT
GTCCCTTGTGTCCCTGTACGGCCACAGGTGAGAAGGGCCAGGTCTGGGAGAATAAATGGCCCTG
GACTGGCAGGCTTTGGGCAGGACTCCTGGAGAGAGAGGGGCAGAGTGGAAGGCTAGGAGGGGCA
GCACAAAAGGAAGAAAGGCCCGGACCCAGGCTAAAACCTTCTCCATTGGCCACACTGGCCAGGC
GCAGCGATGACCGTCACCTACACAGCCAGAGTGGCGAATGCCCGCTTCGGTGGCTTCTCGCAGC
TGCTGCTGCTGTGGCGCGGAAGCATCTACAAGCTCCTGTGGCGAGAGCTGTTATGTTTCCTGGG
ACTCTACATGGCACTAAGCGCCGCCTATCGCTTCTTACTGGCAGAAGAGCAGAAGCGCTACTTC
GAGAAGCTTGTCATATACTGCGACCAGTACGCCAGCCTCATCCCCGTCTCTTTCGTACTTGGCT
TCTACGTGACTCTGGTGGTGCATCGCTGGTGGAACCAGTACCTATGCATGCCTCTGCCGGACGC
ACTCATGTGCATAGTGGCTGGCACCGTGCATGGGCGAGACGATCGAGGCCGCCTCTACCGGCGC
ACGCTCATGCGCTACGCAGGGCTCTCCGCGGTGCTGATCCTTCGTTCTGTTAGCACAGCAGTCT
TCAAACGGTTCCCCACTATAGACCACGTGGTCGAGGCTGGATTTATGACCCGAGAAGAGCGCAA
GAAGTTCGAGAACTTGAATTCGTCCTACAACAAATACTGGGTGCCCTGCGTATGGTTCTCGAGC
CTGGCAGCGCAGGCGCGGCGAGAGGGGCGCATCCGCGACAACAGTGCCCTAAAGTTGCTACTAG
AGGAGCTGAATGTGTTTCGGAGCAAATGTGGGATGCTGTTTCACTACGACTGGATTAGCATACC
CCTCGTCTACACCCAGGTAGTCACTATCGCAGTGTACAGCTACTTCTTGGCTTGCCTCATCGGC
CGTCAGTTCCTAGACCCTGCACAGGGCTACAAAGACCACACCCTGGACCTATGCGTACCCATCT
TCACCTTGCTGCAGTTCTTCTTCTACGCTGGCTGGCTTAAGGTAGCAGAGCAGCTTATTAACCC
TTTTGGGGAAGACGACGACGACTTTGAGACCAACTTTCTTATTGACCGCAACTTCCAGGTGTCC
ATGCTAGCTGTAGATGAGATGTATGACGACTTGGCCATGCTGGAGAAAGATCTATACTGGGATG
CAGCAGAAGCTCGCGCGCCCTACACCGCGGCCACCGCTTTCCTGCTTCAGCAGCCCTCCTTCCA
GGGCTCCACCTTTGATATAGCGCTGGCTAAAGAGGACATGCAGTTCCAGCGGCTGGACGGCGTG
GATGGCCCGCTGGGAGAGGTTCACGGGGACTTTCTGCAGCGCCTCCTGCCGGCGGGGGCGGGTT
CTGTGGGTCCGCTGGGGCGGCGCCTGTCGCTGTTAAGGCGTAAAAACAGCTGCGTGTCAGAGGC
CTCCACTGCTGCCAGCTGTGGCTGTGCAGGCGCGGCGGATGGCGGAGGCGTTGAGTGCGGTTGT
GGAGACCCATTGCTTGACCCCAGCCTGCGGGAGCCTGAGCTGGAGTCTCCCGCATGTCCTGAGC
CGCCTGCCCCCATCCCGGGGCCAACTCCTGAACCTTTTACCACCGTGTCGATTCCGGGTCCTCG
GGCTCCTGCGCCACCCTGGCTGCCCAGCCCTATTGGAGAGGAGGAAGAGAGTCCGGCCTGAGAT
CCTGGGACCAGGACCCCTACGGACACCTACCTAATCCTGCACTAGACATGCTGGCGACCACCAG
GGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCGACCTACTCATTTTGACCAGCGGAATCTCC
CACTGGGGCTGGTGGTTTTAGGGGTCCATATTCTCCCAGCTGTTGCTGCTTCCCTCACCCCCAA
CCCCCCACTCTTTAAGAGGTTTTGCCTTCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGT
CTTCTGACCGTACCTTGGGTTCTTCCCTTCGAGTGGAATTGACGGCCTACCTCATGAAATTGTG
AGGATGAAAAAAATAAATAAAATAAAATAAACGAAA

hide sequence

RefSeq Acc Id:

XM_006530820 ⟹ XP_006530883

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	85,733,831 - 85,740,991 (-)	NCBI
GRCm38	8	85,007,202 - 85,014,362 (-)	NCBI

Sequence:

show sequence

GTCTGGGAGAATAAATGGCCCTGGACTGGCAGGCTTTGGGCAGGACTCCTGGAGAGAGAGGGGC
AGAGTGGAAGGCTAGGAGGGGCAGCACAAAAGGAAGAAAGGTAAAGGAGAATCTGAAGAAGGCC
TGGAGGTGTCGGAGCTGGGGGATTAAATGGGCATTGGGGCCCGGACCCAGGCTAAAACCTTCTC
CATTGGCCACACTGGCCAGGCGCAGCGATGACCGTCACCTACACAGCCAGAGTGGCGAATGCCC
GCTTCGGTGGCTTCTCGCAGCTGCTGCTGCTGTGGCGCGGAAGCATCTACAAGCTCCTGTGGCG
AGAGCTGTTATGTTTCCTGGGACTCTACATGGCACTAAGCGCCGCCTATCGCTTCTTACTGGCA
GAAGAGCAGAAGCGCTACTTCGAGAAGCTTGTCATATACTGCGACCAGTACGCCAGCCTCATCC
CCGTCTCTTTCGTACTTGGCTTCTACGTGACTCTGGTGGTGCATCGCTGGTGGAACCAGTACCT
ATGCATGCCTCTGCCGGACGCACTCATGTGCATAGTGGCTGGCACCGTGCATGGGCGAGACGAT
CGAGGCCGCCTCTACCGGCGCACGCTCATGCGCTACGCAGGGCTCTCCGCGGTGCTGATCCTTC
GTTCTGTTAGCACAGCAGTCTTCAAACGGTTCCCCACTATAGACCACGTGGTCGAGGCTGGATT
TATGACCCGAGAAGAGCGCAAGAAGTTCGAGAACTTGAATTCGTCCTACAACAAATACTGGGTG
CCCTGCGTATGGTTCTCGAGCCTGGCAGCGCAGGCGCGGCGAGAGGGGCGCATCCGCGACAACA
GTGCCCTAAAGTTGCTACTAGAGGAGCTGAATGTGTTTCGGAGCAAATGTGGGATGCTGTTTCA
CTACGACTGGATTAGCATACCCCTCGTCTACACCCAGGTAGTCACTATCGCAGTGTACAGCTAC
TTCTTGGCTTGCCTCATCGGCCGTCAGTTCCTAGACCCTGCACAGGGCTACAAAGACCACACCC
TGGACCTATGCGTACCCATCTTCACCTTGCTGCAGTTCTTCTTCTACGCTGGCTGGCTTAAGGT
AGCAGAGCAGCTTATTAACCCTTTTGGGGAAGACGACGACGACTTTGAGACCAACTTTCTTATT
GACCGCAACTTCCAGGTGTCCATGCTAGCTGTAGATGAGATGTATGACGACTTGGCCATGCTGG
AGAAAGATCTATACTGGGATGCAGCAGAAGCTCGCGCGCCCTACACCGCGGCCACCGCTTTCCT
GCTTCAGCAGCCCTCCTTCCAGGGCTCCACCTTTGATATAGCGCTGGCTAAAGAGGACATGCAG
TTCCAGCGGCTGGACGGCGTGGATGGCCCGCTGGGAGAGGTTCACGGGGACTTTCTGCAGCGCC
TCCTGCCGGCGGGGGCGGGTTCTGTGGGTCCGCTGGGGCGGCGCCTGTCGCTGTTAAGGCGTAA
AAACAGCTGCGTGTCAGAGGCCTCCACTGCTGCCAGCTGTGGCTGTGCAGGCGCGGCGGATGGC
GGAGGCGTTGAGTGCGGTTGTGGAGACCCATTGCTTGACCCCAGCCTGCGGGAGCCTGAGCTGG
AGTCTCCCGCATGTCCTGAGCCGCCTGCCCCCATCCCGGGGCCAACTCCTGAACCTTTTACCAC
CGTGTCGATTCCGGGTCCTCGGGCTCCTGCGCCACCCTGGCTGCCCAGCCCTATTGGAGAGGAG
GAAGAGAGTCCGGCCTGAGATCCTGGGACCAGGACCCCTACGGACACCTACCTAATCCTGCACT
AGACATGCTGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCAGAAAGCCGACCTACTC
ATTTTGACCAGCGGAATCTCCCACTGGGGCTGGTGGTTTTAGGGGTCCATATTCTCCCAGCTGT
TGCTGCTTCCCTCACCCCCAACCCCCCACTCTTTAAGAGGTTTTGCCTTCCAAACACCACCACC
TGACCTGTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCCTTCGAGTGGAATTGAC
GGCCTACCTCATGAAATTGTGAGGATGAAAAAAATAAATAAAATAAAATAAACGAAA

hide sequence

RefSeq Acc Id:

XM_011248341 ⟹ XP_011246643

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	85,733,860 - 85,740,118 (-)	NCBI
GRCm38	8	85,007,231 - 85,013,489 (-)	NCBI

Sequence:

show sequence

TGGCTTCTCGCAGCTGCTGCTGCTGTGGCGCGGAAGCATCTACAAGCTCCTGTGGCGAGAGCTG
TTATGTTTCCTGGGACTCTACATGGCACTAAGCGCCGCCTATCGCTACTGCATTCCCTACCCCA
CAGCTTCTTACTGGCAGAAGAGCAGAAGCGCTACTTCGAGAAGCTTGTCATATACTGCGACCAG
TACGCCAGCCTCATCCCCGTCTCTTTCGTACTTGGCTTCTACGTGACTCTGGTGGTGCATCGCT
GGTGGAACCAGTACCTATGCATGCCTCTGCCGGACGCACTCATGTGCATAGTGGCTGGCACCGT
GCATGGGCGAGACGATCGAGGCCGCCTCTACCGGCGCACGCTCATGCGCTACGCAGGGCTCTCC
GCGGTGCTGATCCTTCGTTCTGTTAGCACAGCAGTCTTCAAACGGTTCCCCACTATAGACCACG
TGGTCGAGGCTGGATTTATGACCCGAGAAGAGCGCAAGAAGTTCGAGAACTTGAATTCGTCCTA
CAACAAATACTGGGTGCCCTGCGTATGGTTCTCGAGCCTGGCAGCGCAGGCGCGGCGAGAGGGG
CGCATCCGCGACAACAGTGCCCTAAAGTTGCTACTAGAGGAGCTGAATGTGTTTCGGAGCAAAT
GTGGGATGCTGTTTCACTACGACTGGATTAGCATACCCCTCGTCTACACCCAGGTAGTCACTAT
CGCAGTGTACAGCTACTTCTTGGCTTGCCTCATCGGCCGTCAGTTCCTAGACCCTGCACAGGGC
TACAAAGACCACACCCTGGACCTATGCGTACCCATCTTCACCTTGCTGCAGTTCTTCTTCTACG
CTGGCTGGCTTAAGGTAGCAGAGCAGCTTATTAACCCTTTTGGGGAAGACGACGACGACTTTGA
GACCAACTTTCTTATTGACCGCAACTTCCAGGTGTCCATGCTAGCTGTAGATGAGATGTATGAC
GACTTGGCCATGCTGGAGAAAGATCTATACTGGGATGCAGCAGAAGCTCGCGCGCCCTACACCG
CGGCCACCGCTTTCCTGCTTCAGCAGCCCTCCTTCCAGGGCTCCACCTTTGATATAGCGCTGGC
TAAAGAGGACATGCAGTTCCAGCGGCTGGACGGCGTGGATGGCCCGCTGGGAGAGGTTCACGGG
GACTTTCTGCAGCGCCTCCTGCCGGCGGGGGCGGGTTCTGTGGGTCCGCTGGGGCGGCGCCTGT
CGCTGTTAAGGCGTAAAAACAGCTGCGTGTCAGAGGCCTCCACTGCTGCCAGCTGTGGCTGTGC
AGGCGCGGCGGATGGCGGAGGCGTTGAGTGCGGTTGTGGAGACCCATTGCTTGACCCCAGCCTG
CGGGAGCCTGAGCTGGAGTCTCCCGCATGTCCTGAGCCGCCTGCCCCCATCCCGGGGCCAACTC
CTGAACCTTTTACCACCGTGTCGATTCCGGGTCCTCGGGCTCCTGCGCCACCCTGGCTGCCCAG
CCCTATTGGAGAGGAGGAAGAGAGTCCGGCCTGAGATCCTGGGACCAGGACCCCTACGGACACC
TACCTAATCCTGCACTAGACATGCTGGCGACCACCAGGGTCTGCACAAGCTAGCTAGGCCTTCA
GAAAGCCGACCTACTCATTTTGACCAGCGGAATCTCCCACTGGGGCTGGTGGTTTTAGGGGTCC
ATATTCTCCCAGCTGTTGCTGCTTCCCTCACCCCCAACCCCCCACTCTTTAAGAGGTTTTGCCT
TCCAAACACCACCACCTGACCTGTGGCCTCTGTTGGTCTTCTGACCGTACCTTGGGTTCTTCCC
TTCGAGTGGAATTGACGGCCTACCTCATGAAATTGTGAGGATGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001123666	(Get FASTA)	NCBI Sequence Viewer
	XP_006530883	(Get FASTA)	NCBI Sequence Viewer
	XP_011246643	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH19528	(Get FASTA)	NCBI Sequence Viewer
	AAH31186	(Get FASTA)	NCBI Sequence Viewer
	AAH36157	(Get FASTA)	NCBI Sequence Viewer
	AAH36163	(Get FASTA)	NCBI Sequence Viewer
	AAS09923	(Get FASTA)	NCBI Sequence Viewer
	EDL10983	(Get FASTA)	NCBI Sequence Viewer
	EDL10984	(Get FASTA)	NCBI Sequence Viewer
	Q8BGM5	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001123666 ⟸ NM_001130194

- UniProtKB:

Q8BGM5 (UniProtKB/Swiss-Prot), A0A0R4J0P0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGLYMALSAAYRFLLAEEQKRYFEK
LVIYCDQYASLIPVSFVLGFYVTLVVHRWWNQYLCMPLPDALMCIVAGTVHGRDDRGRLYRRTL
MRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNKYWVPCVWFSSLA
AQARREGRIRDNSALKLLLEELNVFRSKCGMLFHYDWISIPLVYTQVVTIAVYSYFLACLIGRQ
FLDPAQGYKDHTLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSML
AVDEMYDDLAMLEKDLYWDAAEARAPYTAATAFLLQQPSFQGSTFDIALAKEDMQFQRLDGVDG
PLGEVHGDFLQRLLPAGAGSVGPLGRRLSLLRRKNSCVSEASTAASCGCAGAADGGGVECGCGD
PLLDPSLREPELESPACPEPPAPIPGPTPEPFTTVSIPGPRAPAPPWLPSPIGEEEESPA

hide sequence

RefSeq Acc Id:	XP_006530883 ⟸ XM_006530820
- Peptide Label:	isoform X1
- UniProtKB:	Q8BGM5 (UniProtKB/Swiss-Prot), A0A0R4J0P0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGLYMALSAAYRFLLAEEQKRYFEK LVIYCDQYASLIPVSFVLGFYVTLVVHRWWNQYLCMPLPDALMCIVAGTVHGRDDRGRLYRRTL MRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNKYWVPCVWFSSLA AQARREGRIRDNSALKLLLEELNVFRSKCGMLFHYDWISIPLVYTQVVTIAVYSYFLACLIGRQ FLDPAQGYKDHTLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSML AVDEMYDDLAMLEKDLYWDAAEARAPYTAATAFLLQQPSFQGSTFDIALAKEDMQFQRLDGVDG PLGEVHGDFLQRLLPAGAGSVGPLGRRLSLLRRKNSCVSEASTAASCGCAGAADGGGVECGCGD PLLDPSLREPELESPACPEPPAPIPGPTPEPFTTVSIPGPRAPAPPWLPSPIGEEEESPA hide sequence

RefSeq Acc Id:

XP_011246643 ⟸ XM_011248341

- Peptide Label:

isoform X2

- Sequence:

show sequence

MFPGTLHGTKRRLSLLHSLPHSFLLAEEQKRYFEKLVIYCDQYASLIPVSFVLGFYVTLVVHRW
WNQYLCMPLPDALMCIVAGTVHGRDDRGRLYRRTLMRYAGLSAVLILRSVSTAVFKRFPTIDHV
VEAGFMTREERKKFENLNSSYNKYWVPCVWFSSLAAQARREGRIRDNSALKLLLEELNVFRSKC
GMLFHYDWISIPLVYTQVVTIAVYSYFLACLIGRQFLDPAQGYKDHTLDLCVPIFTLLQFFFYA
GWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSMLAVDEMYDDLAMLEKDLYWDAAEARAPYTA
ATAFLLQQPSFQGSTFDIALAKEDMQFQRLDGVDGPLGEVHGDFLQRLLPAGAGSVGPLGRRLS
LLRRKNSCVSEASTAASCGCAGAADGGGVECGCGDPLLDPSLREPELESPACPEPPAPIPGPTP
EPFTTVSIPGPRAPAPPWLPSPIGEEEESPA

hide sequence

RefSeq Acc Id:

ENSMUSP00000053408 ⟸ ENSMUST00000059072

RefSeq Acc Id:

ENSMUSP00000147837 ⟸ ENSMUST00000209421

RefSeq Acc Id:

ENSMUSP00000147580 ⟸ ENSMUST00000209322

Promoters

RGD ID:

8667727

Promoter ID:

EPDNEW_M11895

Type:

multiple initiation site

Name:

Best2_1

Description:

Mus musculus bestrophin 2 , transcript variant 2, non-codingRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	85,014,390 - 85,014,450	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2387588	AgrOrtholog
Ensembl Genes	ENSMUSG00000052819	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000053408	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUSP00000147580	UniProtKB/TrEMBL
	ENSMUSP00000147837	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000059072	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUST00000209322	UniProtKB/TrEMBL
	ENSMUST00000209421	ENTREZGENE, UniProtKB/TrEMBL
InterPro	Bestrophin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Bestrophin/UPF0187	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:212989	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:2387588	ENTREZGENE
NCBI Gene	212989	ENTREZGENE
PANTHER	PTHR10736	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Bestrophin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Best2	PhenoGen
UniGene	Mm.215154	ENTREZGENE
UniProt	A0A0R4J0P0	ENTREZGENE, UniProtKB/TrEMBL
	BEST2_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary	Q6H1U9	UniProtKB/Swiss-Prot
	Q8VCM0	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)