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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | prostate cancer | | ISO | RGD:1313264 | 8554872 | ClinVar Annotator: match by term: Prostate cancer | ClinVar | PMID:23265383 | |
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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | prostate cancer | | ISO | RGD:1313264 | 8554872 | ClinVar Annotator: match by term: Prostate cancer | ClinVar | PMID:23265383 | |
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1. | Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90. |
2. | MGD data from the GO Consortium |
3. | Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73. |
4. | RGD automated import pipeline |
5. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
6. | RGD automated import pipeline for gene-chemical interactions |
PMID:8889548 | PMID:10349636 | PMID:10922068 | PMID:11042159 | PMID:11076861 | PMID:11943477 | PMID:12477932 | PMID:15464227 | PMID:15582152 | PMID:16141072 | PMID:16141073 | PMID:16284245 |
PMID:16516881 | PMID:16602821 | PMID:17145500 | PMID:18287559 | PMID:20562862 | PMID:21267068 | PMID:21677750 | PMID:21734292 | PMID:23236500 | PMID:23375831 | PMID:23401525 | PMID:24403160 |
PMID:26441539 | PMID:26720915 | PMID:28235897 | PMID:28558017 | PMID:28680963 | PMID:28854365 | PMID:30770891 | PMID:31044365 |
Neto2 (Mus musculus - house mouse) |
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NETO2 (Homo sapiens - human) |
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Neto2 (Rattus norvegicus - Norway rat) |
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Neto2 (Chinchilla lanigera - long-tailed chinchilla) |
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NETO2 (Pan paniscus - bonobo/pygmy chimpanzee) |
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NETO2 (Canis lupus familiaris - dog) |
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Neto2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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NETO2 (Sus scrofa - pig) |
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NETO2 (Chlorocebus sabaeus - African green monkey) |
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Neto2 (Heterocephalus glaber - naked mole-rat) |
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D8Mit79 |
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AI854825 |
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The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
RefSeq Transcripts | NM_001081324 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001357287 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001357288 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NR_151665 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_006531437 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030243818 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036154337 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036154338 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036154339 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC122409 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK017458 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK035815 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK047354 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK081036 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK081462 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK083010 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK083512 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AW544441 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AY138991 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC068168 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC151050 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC157941 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC172104 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC172139 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000109686 ⟹ ENSMUSP00000105308 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000209259 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000209479 ⟹ ENSMUSP00000148172 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000215046 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000216286 ⟹ ENSMUSP00000150062 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001081324 ⟹ NP_001074793 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001357287 ⟹ NP_001344216 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001357288 ⟹ NP_001344217 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_151665 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006531437 ⟹ XP_006531500 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030243818 ⟹ XP_030099678 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036154337 ⟹ XP_036010230 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_036154338 ⟹ XP_036010231 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | XM_036154339 ⟹ XP_036010232 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001074793 | (Get FASTA) | NCBI Sequence Viewer |
NP_001344216 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001344217 | (Get FASTA) | NCBI Sequence Viewer | |
XP_006531500 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030099678 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036010230 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036010231 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036010232 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAI51051 | (Get FASTA) | NCBI Sequence Viewer |
AAI57942 | (Get FASTA) | NCBI Sequence Viewer | |
AAI72104 | (Get FASTA) | NCBI Sequence Viewer | |
AAI72139 | (Get FASTA) | NCBI Sequence Viewer | |
AAN38319 | (Get FASTA) | NCBI Sequence Viewer | |
BAC38225 | (Get FASTA) | NCBI Sequence Viewer | |
BAC38938 | (Get FASTA) | NCBI Sequence Viewer | |
Q8BNJ6 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001074793 ⟸ NM_001081324 |
- Peptide Label: | isoform 3 |
- UniProtKB: | Q8BNJ6 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_006531500 ⟸ XM_006531437 |
- Peptide Label: | isoform X2 |
- UniProtKB: | Q8BNJ6 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_030099678 ⟸ XM_030243818 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | NP_001344216 ⟸ NM_001357287 |
- Peptide Label: | isoform 1 precursor |
RefSeq Acc Id: | NP_001344217 ⟸ NM_001357288 |
- Peptide Label: | isoform 2 precursor |
RefSeq Acc Id: | ENSMUSP00000105308 ⟸ ENSMUST00000109686 |
RefSeq Acc Id: | ENSMUSP00000150062 ⟸ ENSMUST00000216286 |
RefSeq Acc Id: | ENSMUSP00000148172 ⟸ ENSMUST00000209479 |
RefSeq Acc Id: | XP_036010231 ⟸ XM_036154338 |
- Peptide Label: | isoform X4 |
RefSeq Acc Id: | XP_036010230 ⟸ XM_036154337 |
- Peptide Label: | isoform X3 |
RefSeq Acc Id: | XP_036010232 ⟸ XM_036154339 |
- Peptide Label: | isoform X5 |
RGD ID: | 8667769 | ||||||||
Promoter ID: | EPDNEW_M11916 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Neto2_1 | ||||||||
Description: | Mus musculus neuropilin and tolloid -like 2 , transcript variant2, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 6842477 | ||||||||
Promoter ID: | MM_KWN:55158 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | Brain | ||||||||
Transcripts: | AK005119_1500002J14RIK, LINCRNA_1019, UC009MQD.1, UC009MQE.1 | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1921763 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000036902 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Protein | ENSMUSP00000105308 | ENTREZGENE, UniProtKB/Swiss-Prot |
ENSMUSP00000148172 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSMUSP00000150062 | ENTREZGENE, UniProtKB/Swiss-Prot | |
Ensembl Transcript | ENSMUST00000109686 | ENTREZGENE, UniProtKB/Swiss-Prot |
ENSMUST00000209259 | ENTREZGENE | |
ENSMUST00000209479 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSMUST00000216286 | ENTREZGENE, UniProtKB/Swiss-Prot | |
Gene3D-CATH | 2.60.120.290 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
4.10.400.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
InterPro | CUB_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
LDL_receptor-like_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
LDLR_class-A_CS | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
LDrepeatLR_classA_rpt | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
NETO2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Sperma_CUB_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:74513 | UniProtKB/Swiss-Prot |
MGD | MGI:1921763 | ENTREZGENE |
NCBI Gene | 74513 | ENTREZGENE |
PANTHER | PTHR45645:SF22 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Pfam | CUB | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ldl_recept_a | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Neto2 | PhenoGen |
PROSITE | CUB | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
LDLRA_1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
LDLRA_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
SMART | CUB | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
LDLa | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Superfamily-SCOP | SSF49854 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
SSF57424 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
UniGene | Mm.126079 | ENTREZGENE |
UniProt | B2RXQ6_MOUSE | UniProtKB/TrEMBL |
NETO2_MOUSE | UniProtKB/Swiss-Prot, ENTREZGENE | |
UniProt Secondary | B2RX93 | UniProtKB/Swiss-Prot |
Q5VM49 | UniProtKB/Swiss-Prot | |
Q8C4Q8 | UniProtKB/Swiss-Prot |