Abce1 (ATP-binding cassette, sub-family E (OABP), member 1)

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Gene: Abce1 (ATP-binding cassette, sub-family E (OABP), member 1) Mus musculus

Analyze

Symbol:

Abce1

Name:

ATP-binding cassette, sub-family E (OABP), member 1

RGD ID:

1313250

MGI Page

MGI

Description:

Is expressed in several structures, including brain ventricular layer; cranium; medulla oblongata basal plate mantle layer; thymus primordium; and vertebral axis musculature. Human ortholog(s) of this gene implicated in human immunodeficiency virus infectious disease. Orthologous to human ABCE1 (ATP binding cassette subfamily E member 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

ATP-binding cassette sub-family E member 1; ATP-binding cassette, subfamily E, member 1; C79080; O; Oabp; R; ribonuclease 4 inhibitor; ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent) inhibitor; RLI; RNase L inhibitor; Rnaseli; RNS41; RNS4I; RNS4l (Eye)

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ABCE1 (ATP binding cassette subfamily E member 1)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Abce1 (ATP binding cassette subfamily E member 1)	HGNC	Treefam, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Abce1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ABCE1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ABCE1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Abce1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ABCE1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	ABCE1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Abce1 (ATP binding cassette subfamily E member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Abce1 (ATP binding cassette subfamily E member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	ABCE1 (ATP binding cassette subfamily E member 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	abce1 (ATP-binding cassette, sub-family E (OABP), member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam\|ZFIN)
Saccharomyces cerevisiae (baker's yeast):	RLI1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	abce-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)
Drosophila melanogaster (fruit fly):	pix	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)

Related Pseudogenes:

Gm19061 Gm6640

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	80,410,071 - 80,438,369 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	80,410,091 - 80,438,369 (-)	Ensembl
GRCm38	8	79,683,442 - 79,711,740 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	79,683,462 - 79,711,740 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	82,207,341 - 82,235,639 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	82,579,717 - 82,607,693 (-)	NCBI			mm8
Celera	8	83,959,260 - 83,987,564 (-)	NCBI		Celera
Cytogenetic Map	8	C1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

breast carcinoma (ISO)

Colorectal Neoplasms (ISO)

hepatocellular carcinoma (ISO)

human immunodeficiency virus infectious disease (ISO)

lung adenocarcinoma (ISO)

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (EXP)

1-nitropyrene (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (ISO)

2,6-dinitrotoluene (ISO)

2-methylcholine (ISO)

4-amino-2,6-dinitrotoluene (ISO)

acrolein (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

antirheumatic drug (ISO)

Aroclor 1254 (EXP)

atrazine (ISO)

benzo[a]pyrene (EXP)

bisphenol A (ISO)

C60 fullerene (ISO)

carbon nanotube (EXP)

chromium(6+) (EXP)

cisplatin (ISO)

coumestrol (ISO)

cyclosporin A (EXP)

dicrotophos (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethyl methanesulfonate (ISO)

finasteride (ISO)

flutamide (ISO)

folic acid (EXP)

gentamycin (ISO)

hexadecanoic acid (ISO)

lead diacetate (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

methylparaben (ISO)

N-nitrosodiethylamine (ISO)

nefazodone (ISO)

nimesulide (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorononanoic acid (ISO)

phenobarbital (ISO)

pinosylvin (ISO)

potassium chromate (ISO)

propiconazole (EXP)

silicon dioxide (ISO)

succimer (EXP,ISO)

sunitinib (ISO)

tetrachloromethane (EXP,ISO)

thiophenes (ISO)

trans-pinosylvin (ISO)

tunicamycin (EXP)

urethane (ISO)

valproic acid (EXP,ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of endoribonuclease activity (ISO)

regulation of translation (IEA)

ribosomal subunit export from nucleus (IBA)

translational initiation (IBA)

translational termination (IBA)

Cellular Component

cytoplasm (ISO)

cytosol (ISO)

eukaryotic translation initiation factor 3 complex (IBA)

mitochondrion (ISO)

Molecular Function

4 iron, 4 sulfur cluster binding (IEA)

ATP binding (IBA)

endoribonuclease inhibitor activity (ISO)

iron ion binding (IBA)

iron-sulfur cluster binding (IEA)

metal ion binding (IEA)

nucleotide binding (IEA)

protein binding (ISO)

ribosomal small subunit binding (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

translation termination pathway (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal seminal vesicle morphology (IEA)

anophthalmia (IEA)

decreased circulating creatinine level (IEA)

decreased lymphocyte cell number (IEA)

decreased prepulse inhibition (IEA)

embryonic lethality between implantation and somite formation, complete penetrance (IEA)

embryonic lethality prior to organogenesis (IEA)

enlarged lymph nodes (IEA)

hyperactivity (IEA)

preweaning lethality, complete penetrance (IEA)

References

References - curated


1.	Borel F, etal., Hepatology. 2012 Mar;55(3):821-32. doi: 10.1002/hep.24682. Epub 2012 Jan 13.
2.	Crawford DC, etal., Genes Immun. 2009 Dec;10(8):715-21. doi: 10.1038/gene.2009.57. Epub 2009 Aug 6.
3.	Franckenberg S, etal., Curr Opin Struct Biol. 2012 Dec;22(6):786-96. doi: 10.1016/j.sbi.2012.08.002. Epub 2012 Sep 29.
4.	Hlavac V, etal., Pharmacogenomics. 2013 Apr;14(5):515-29. doi: 10.2217/pgs.13.26.
5.	Hlavata I, etal., Mutagenesis. 2012 Mar;27(2):187-96. doi: 10.1093/mutage/ger075.
6.	Hopfner KP, Biol Chem. 2012 Oct;393(10):1079-88. doi: 10.1515/hsz-2012-0196.
7.	Ko MS, etal., Development 2000 Apr;127(8):1737-49.
8.	Liu DZ, etal., Zhonghua Zhong Liu Za Zhi. 2008 Apr;30(4):296-7.
9.	MGD data from the GO Consortium
10.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
11.	RGD automated import pipeline
12.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9234238	PMID:9524254	PMID:10349636	PMID:10708515	PMID:10866653	PMID:10922068	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11544199	PMID:12477932	PMID:12520002
PMID:12904583	PMID:14610273	PMID:15489334	PMID:15611179	PMID:16141072	PMID:16141073	PMID:16930510	PMID:17967808	PMID:18585418	PMID:18799693	PMID:21267068	PMID:21873635
PMID:24457600	PMID:28380459	PMID:30196744	PMID:30457570	PMID:32325033

Genomics

Comparative Map Data

Abce1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	80,410,071 - 80,438,369 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	8	80,410,091 - 80,438,369 (-)	Ensembl
GRCm38	8	79,683,442 - 79,711,740 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	79,683,462 - 79,711,740 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	82,207,341 - 82,235,639 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	8	82,579,717 - 82,607,693 (-)	NCBI			mm8
Celera	8	83,959,260 - 83,987,564 (-)	NCBI		Celera
Cytogenetic Map	8	C1	NCBI

ABCE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	4	145,098,288 - 145,129,524 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	4	145,098,311 - 145,129,524 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	4	146,019,463 - 146,050,676 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	146,238,606 - 146,270,126 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	4	146,377,090 - 146,407,936	NCBI
Celera	4	143,346,498 - 143,378,018 (+)	NCBI
Cytogenetic Map	4	q31.21	NCBI
HuRef	4	141,750,477 - 141,781,999 (+)	NCBI		HuRef
CHM1_1	4	145,995,426 - 146,026,945 (+)	NCBI		CHM1_1

Abce1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	19	28,205,566 - 28,230,489 (+)	NCBI
Rnor_6.0 Ensembl	19	31,867,981 - 31,892,863 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	19	31,867,960 - 31,892,863 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	19	42,771,943 - 42,796,838 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	30,093,741 - 30,118,625 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	19	30,098,545 - 30,123,448 (+)	NCBI
Celera	19	27,713,656 - 27,738,540 (+)	NCBI		Celera
Cytogenetic Map	19	q11	NCBI

Abce1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955428	1,029,399 - 1,058,902 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955428	1,029,909 - 1,058,902 (+)	NCBI	ChiLan1.0	ChiLan1.0

ABCE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	149,105,912 - 149,137,028 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	149,105,912 - 149,137,028 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	137,445,210 - 137,476,309 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

ABCE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	15	43,781,885 - 43,811,883 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	15	43,781,838 - 43,813,529 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Abce1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936535	3,956,490 - 3,985,002 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ABCE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	83,299,314 - 83,353,110 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	83,302,055 - 83,353,208 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	88,572,102 - 88,623,679 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ABCE1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	91,673,359 - 91,704,774 (+)	NCBI

Abce1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624853	4,059,271 - 4,087,313 (+)	NCBI

Position Markers

D9Mit34.1

Mouse Assembly	Chr	Position (strand)	Source
Cytogenetic Map	7	F1	UniSTS
Cytogenetic Map	13	D1	UniSTS
Cytogenetic Map	1	C3	UniSTS
Cytogenetic Map	2	C1.3	UniSTS
Cytogenetic Map	19	D1	UniSTS
Cytogenetic Map	9	F1	UniSTS
Cytogenetic Map	1	F	UniSTS
Cytogenetic Map	7	D3	UniSTS
Cytogenetic Map	11	E2	UniSTS
Cytogenetic Map	3	F2	UniSTS
Cytogenetic Map	14	C3	UniSTS
Cytogenetic Map	9	A3	UniSTS
Cytogenetic Map	2	H2	UniSTS
Cytogenetic Map	11	E1	UniSTS
Cytogenetic Map	2	H4	UniSTS
Cytogenetic Map	8	B3.3	UniSTS
Cytogenetic Map	4	D1	UniSTS
Cytogenetic Map	4	E2	UniSTS
Cytogenetic Map	2	E5	UniSTS
Cytogenetic Map	11	B4	UniSTS
Cytogenetic Map	5	G3	UniSTS
Cytogenetic Map	X	A5	UniSTS
Cytogenetic Map	10	C1	UniSTS
Cytogenetic Map	12	A1.1	UniSTS
Cytogenetic Map	6	F2	UniSTS
Cytogenetic Map	1	C1.3	UniSTS
Cytogenetic Map	16	B1	UniSTS
Cytogenetic Map	12	C1	UniSTS
Cytogenetic Map	7	E2	UniSTS
Cytogenetic Map	9	F2	UniSTS
Cytogenetic Map	5	F	UniSTS
Cytogenetic Map	2	H1	UniSTS
Cytogenetic Map	2	E2	UniSTS
Cytogenetic Map	15	F1	UniSTS
Cytogenetic Map	15	E1	UniSTS
Cytogenetic Map	3	G2	UniSTS
Cytogenetic Map	6	F3	UniSTS
Cytogenetic Map	13	B3	UniSTS
Cytogenetic Map	12	F1	UniSTS
Cytogenetic Map	1	E4	UniSTS
Cytogenetic Map	1	E3	UniSTS
Cytogenetic Map	5	E1	UniSTS
Cytogenetic Map	7	F3	UniSTS
Cytogenetic Map	16	B3	UniSTS
Cytogenetic Map	14	D2	UniSTS
Cytogenetic Map	19	C2	UniSTS
Cytogenetic Map	19	D3	UniSTS
Cytogenetic Map	1	H5	UniSTS
Cytogenetic Map	1	D	UniSTS
Cytogenetic Map	14	B	UniSTS
Cytogenetic Map	11	C	UniSTS
Cytogenetic Map	10	B4	UniSTS
Cytogenetic Map	6	G3	UniSTS
Cytogenetic Map	7	A1	UniSTS
Cytogenetic Map	7	A3	UniSTS
Cytogenetic Map	8	E1	UniSTS
Cytogenetic Map	8	A2	UniSTS
Cytogenetic Map	4	D3	UniSTS
Cytogenetic Map	2	B	UniSTS
Cytogenetic Map	5	A3	UniSTS
Cytogenetic Map	9	D	UniSTS
Cytogenetic Map	5	C1	UniSTS
Cytogenetic Map	19	C3	UniSTS
Cytogenetic Map	13	A2-A3	UniSTS
Cytogenetic Map	4	C6	UniSTS
Cytogenetic Map	17	D	UniSTS
Cytogenetic Map	17	B1	UniSTS
Cytogenetic Map	17	A3.3	UniSTS
Cytogenetic Map	13	A1	UniSTS
Cytogenetic Map	3	F2.1	UniSTS
Cytogenetic Map	15	D3	UniSTS
Cytogenetic Map	8	D2	UniSTS
Cytogenetic Map	12	A3	UniSTS
Cytogenetic Map	1	H2.1	UniSTS
Cytogenetic Map	7	F5	UniSTS
Cytogenetic Map	7	C	UniSTS
Cytogenetic Map	2	E1	UniSTS
Cytogenetic Map	11	B2	UniSTS
Cytogenetic Map	16	A3	UniSTS
Cytogenetic Map	5	C3.3	UniSTS
Cytogenetic Map	16	A1	UniSTS
Cytogenetic Map	5	G1	UniSTS
Cytogenetic Map	6	A2	UniSTS
Cytogenetic Map	7	B1	UniSTS
Cytogenetic Map	3	F2.2	UniSTS
Cytogenetic Map	5	C3.1	UniSTS
Cytogenetic Map	2	C3	UniSTS
Cytogenetic Map	17	A3.2-A3.3	UniSTS
Cytogenetic Map	6	E3	UniSTS
Cytogenetic Map	11	B1.1	UniSTS
Cytogenetic Map	1	H6	UniSTS
Cytogenetic Map	2	C2	UniSTS
Cytogenetic Map	19	C	UniSTS
Cytogenetic Map	17	E1.3	UniSTS
Cytogenetic Map	5	A1	UniSTS
Cytogenetic Map	11	B5	UniSTS
Cytogenetic Map	9	A5.2	UniSTS
Cytogenetic Map	1	A1	UniSTS
Cytogenetic Map	13	A5	UniSTS
Cytogenetic Map	X	A1.1	UniSTS
Cytogenetic Map	4	D2.3	UniSTS
Cytogenetic Map	4	B3	UniSTS
Cytogenetic Map	3	A3	UniSTS
Cytogenetic Map	2	A3	UniSTS
Cytogenetic Map	8	C	UniSTS
Cytogenetic Map	12	E	UniSTS
Cytogenetic Map	10	C2	UniSTS
Cytogenetic Map	5	G2	UniSTS
Cytogenetic Map	5	B1	UniSTS
Cytogenetic Map	3	F1	UniSTS
Cytogenetic Map	2	H3	UniSTS
Cytogenetic Map	2	A1	UniSTS
Cytogenetic Map	1	H1	UniSTS
Cytogenetic Map	15	F3	UniSTS
Cytogenetic Map	9	E1	UniSTS
Cytogenetic Map	9	C	UniSTS
Cytogenetic Map	1	A2	UniSTS
Cytogenetic Map	12	C3	UniSTS
Cytogenetic Map	19	A	UniSTS
Cytogenetic Map	5	B2	UniSTS
Cytogenetic Map	3	D	UniSTS
Cytogenetic Map	11	B1.3	UniSTS
Cytogenetic Map	6	B1	UniSTS
Cytogenetic Map	X	C-D	UniSTS
Cytogenetic Map	5	G1.3	UniSTS
Cytogenetic Map	7	D1-E2	UniSTS
Cytogenetic Map	11	A1	UniSTS
Cytogenetic Map	13	B1	UniSTS
Cytogenetic Map	1	H2.2	UniSTS
Cytogenetic Map	8	C3	UniSTS
Cytogenetic Map	11	D	UniSTS
Cytogenetic Map	X	A7.3	UniSTS
Cytogenetic Map	16	C1.1	UniSTS
Cytogenetic Map	15	F2	UniSTS
Cytogenetic Map	9	A2	UniSTS
Cytogenetic Map	1	H4-H6	UniSTS
Cytogenetic Map	12	D2	UniSTS
Cytogenetic Map	1	G3	UniSTS
Cytogenetic Map	5	E5	UniSTS
Cytogenetic Map	1	H3	UniSTS
Cytogenetic Map	19	B	UniSTS
cM Map	9	50.0	UniSTS
Whitehead Genetic	9	43.7	UniSTS

RH126496

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	8	79,683,682 - 79,683,918	UniSTS	GRCm38
MGSCv37	8	82,207,581 - 82,207,817	UniSTS	GRCm37
Celera	8	83,959,500 - 83,959,736	UniSTS
Cytogenetic Map	8	C	UniSTS

Abce1

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	14	16,633,699 - 16,633,933	UniSTS	GRCm38
MGSCv37	14	17,466,213 - 17,466,447	UniSTS	GRCm37
Celera	14	12,334,989 - 12,335,223	UniSTS
Cytogenetic Map	8	C	UniSTS
cM Map	8		UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4140967	Bmd39_m	bone mineral density 39 (mouse)			Not determined		8	32016544	117238700	Mouse
1558875	Eae31_m	experimental allergic encephalomyelitis susceptibility 31 (mouse)			Not determined		8	34642776	114837007	Mouse
1301013	Capsq4_m	capsaicin sensitivity related QTL 4 (mouse)			Not determined		8	36163000	92728652	Mouse
27226754	Femd6_m	femur midshaft diameter 6, 10 week (mouse)					8	37400000	109600000	Mouse
12904744	Carcdq1_m	cardiac collagen deposition QTL 1 (mouse)					8	39709256	94689598	Mouse
1301717	Adip4_m	adiposity 4 (mouse)			Not determined		8	47637030	81637146	Mouse
10766453	Char11_m	P. chabaudi malaria resistance QTL 11 (mouse)					8	47637030	81637146	Mouse
1301441	Skull11_m	skull morphology 11 (mouse)			Not determined		8	47737134	81737254	Mouse
1357715	Alaa3_m	alopecia areata 3 (mouse)			Not determined		8	48792939	82793021	Mouse
14746987	Manh64_m	mandible shape 64 (mouse)					8	50053306	84053306	Mouse
14747005	Mancz7_m	mandible centroid size 7 (mouse)					8	50053306	84053306	Mouse
14700686	Civq3_m	cerebral infarct volume QTL 3 (mouse)					8	51882191	85882191	Mouse
1301506	Aevm1_m	autoimmune extremity vasculitis in MRL mice 1 (mouse)			Not determined		8	54287817	88287993	Mouse
1301952	Im3_m	immunoregulatory 3 (mouse)			Not determined		8	54706614	88706763	Mouse
10412287	Carg3_m	Candida albicans resistance gene 3 (mouse)			Not determined		8	55545028	89545028	Mouse
11353828	Gf7_m	gonadal fat pad weight 7 (mouse)					8	58201479	92201479	Mouse
10043975	Obq31_m	obesity QTL 31 (mouse)			Not determined		8	58409776	92409776	Mouse
1301688	Orch6_m	autoimmune orchitis resistance 6 (mouse)			Not determined		8	60786850	94786976	Mouse
4141285	Tgq18_m	triglyceride QTL 18 (mouse)			Not determined			63460107	97460107	Mouse
4141797	Skmw16_m	skeletal muscle weight 16 (mouse)			Not determined		8	63939547	97939696	Mouse
1357787	Vtbt5_m	vertebral trabecular bone trait 5 (mouse)			Not determined		8	65357768	99357920	Mouse
10043992	Hbnr11_m	Heligmosomoides bakeri nematode resistance 11 (mouse)			Not determined		8	65600207	99600347	Mouse
10766466	Char12_m	P. chabaudi malaria resistance QTL 12 (mouse)					8	68269827	82600347	Mouse
1301767	Fcsa2_m	femoral cross-sectional area 2 (mouse)			Not determined		8	70305375	104305495	Mouse
4142283	Imraq2_m	immune response to AAV2 QTL 2 (mouse)			Not determined		8	70305375	104305495	Mouse
1558780	Idd22_m	insulin dependent diabetes susceptibility 22 (mouse)			Not determined		8	71102903	105103009	Mouse
4141395	Char2a_m	P. chabaudi malaria resistance QTL 2a (mouse)			Not determined			71136783	90202598	Mouse
4142023	W3q5_m	weight 3 weeks QTL 5 (mouse)			Not determined			71287817	123895615	Mouse
1357708	Orq1_m	ovulation rate QTL 1 (mouse)			Not determined		8	71287817	123895615	Mouse
1301872	Cd4ts3_m	CD4 T cell subset 3 (mouse)			Not determined		8	71396181	105396393	Mouse
1300920	Pitm3_m	prion incubation time 3 (mouse)			Not determined		8	73202495	107202598	Mouse
27095912	Pglq14_m	pelvic girdle length QTL 14, 16 week (mouse)					8	73400000	126100000	Mouse
1558890	Lith18_m	lithogenic gene 18 (mouse)			Not determined		8	75675517	109675623	Mouse
1357470	Obq16_m	obesity QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
1301808	Nhdlq1_m	non-HDL QTL 1 (mouse)			Not determined		8	75685348	109685497	Mouse
1301874	Hdlq16_m	HDL QTL 16 (mouse)			Not determined		8	75685348	109685497	Mouse
10412234	Nhdlq14_m	non-HDL QTL 14 (mouse)			Not determined		8	75685348	109685497	Mouse
1301099	Cbm2_m	cerebellum weight 2 (mouse)			Not determined		8	78518613	112518703	Mouse
1301581	Char2_m	P. chabaudi malaria resistance QTL 2 (mouse)			Not determined		8	79082178	113082403	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	588
Count of miRNA genes:	384
Interacting mature miRNAs:	452
Transcripts:	ENSMUST00000080536
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_015751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_152614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC101687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC158348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK049299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK088265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK133748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK134738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK144711	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK147151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK167704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AV213051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB651928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC005422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC066794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC066836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CD564438	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U90446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000080536 ⟹ ENSMUSP00000079379

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	79,683,462 - 79,711,740 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000209354

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	79,692,799 - 79,699,413 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000211509

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	79,686,206 - 79,711,670 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000213842

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	8	79,708,072 - 79,711,650 (-)	Ensembl

RefSeq Acc Id:

NM_015751 ⟹ NP_056566

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	80,410,071 - 80,438,369 (-)	NCBI
GRCm38	8	79,683,442 - 79,711,740 (-)	ENTREZGENE
MGSCv37	8	82,207,341 - 82,235,639 (-)	RGD
Celera	8	83,959,260 - 83,987,564 (-)	RGD
cM Map	8		ENTREZGENE

Sequence:

show sequence

AACGTCATCACTCCCTCCAGGGCGCCGACTCTGCGCTCTGTCGCGCACGCGCACTATGCCCTCA
TGCCTTGCGCGAGGCGGCGGCTGTGCACCGCCATCTTTGCCGGTGGCGGTAAGAACACGCTGTG
TGCTAAGACCTGACGGCTAGCGCTGCTTTGGCTACTGCACGCCCCGCTGTAAGGGGCCCGCTGT
CTCCAGAAGAACTGGATATTCTTTGTTACAATTATGGCAGACAAATTAACAAGAATTGCTATTG
TCAACCACGACAAATGCAAACCTAAGAAATGTCGACAGGAGTGCAAAAAGAGTTGCCCTGTGGT
TCGGATGGGAAAATTGTGCATAGAAGTTACACCCCAGAGCAAAATAGCATGGATTTCTGAAACT
CTCTGTATTGGTTGTGGTATTTGTATTAAGAAATGTCCCTTTGGCGCCTTATCAATTGTCAATT
TGCCAAGCAACTTGGAAAAAGAAACAACACATCGCTACTGTGCCAATGCCTTCAAGCTTCACAG
GTTGCCTATCCCTCGTCCAGGTGAAGTTTTGGGATTAGTTGGAACTAATGGTATTGGAAAGTCA
ACTGCACTAAAAATTTTAGCAGGAAAACAAAAGCCAAACCTTGGAAAGTATGATGATCCACCTG
ATTGGCAAGAGATTTTGACTTATTTCCGTGGATCTGAATTACAAAATTACTTTACCAAGATTCT
CGAAGATGACCTAAAAGCCATTATCAAACCTCAATATGTAGACCAAATTCCCAAGGCTGCAAAG
GGGACAGTGGGCTCTATTCTGGACCGAAAAGATGAAACAAAGACACAGGCAATTGTATGTCAGC
AGCTTGATTTAACTCACCTTAAAGAACGAAATGTCGAAGATCTTTCAGGAGGAGAGTTGCAGAG
ATTTGCTTGTGCTGTCGTTTGCATACAAAAGGCTGATATTTTTATGTTTGATGAACCTTCTAGT
TACCTCGATGTCAAGCAACGTTTAAAGGCTGCCATTACGATTCGATCTCTAATAAATCCAGATA
GATATATCATTGTGGTGGAGCATGATCTAAGTGTATTAGACTATCTCTCTGACTTCATCTGCTG
TCTATATGGGGTACCGAGTGCTTATGGTGTTGTCACGATGCCTTTTAGTGTAAGAGAAGGCATA
AATATATTTTTGGATGGCTATGTTCCAACAGAGAACCTGAGGTTCAGGGATGCGTCGCTTGTTT
TTAAGGTAGCTGAGACAGCAAATGAAGAAGAAGTTAAAAAGATGTGCATGTATAAATATCCCGG
GATGAAGAAAAAGATGGGAGAGTTCGAGCTAGCAATTGTAGCTGGAGAGTTCACGGACTCTGAG
ATCATGGTGATGCTGGGGGAGAATGGTACAGGTAAAACTACATTTATCAGAATGCTTGCTGGAA
GGCTTAAACCAGATGAAGGAGGAGAAGTGCCAGTTCTAAATGTCAGTTATAAGCCACAGAAAAT
CAGTCCCAAATCAACAGGAAGTGTTCGCCAGTTACTGCATGAAAAGATCAGAGATGCTTACACG
CATCCGCAGTTTGTGACTGATGTAATGAAGCCCCTACAGATTGAAAACATCATTGACCAAGAGG
TACAGACATTGTCTGGTGGTGAACTTCAGCGAGTAGCTTTAGCTCTTTGTTTGGGCAAACCTGC
TGACGTCTATTTGATTGATGAACCTTCTGCATATTTGGATTCTGAGCAAAGATTAATGGCAGCT
CGGGTCGTCAAACGTTTCATTCTCCATGCAAAGAAGACAGCTTTTGTTGTAGAACATGACTTCA
TCATGGCCACCTATCTAGCAGATCGCGTCATCGTTTTTGATGGTGTTCCATCAAAGAACACAGT
TGCAAACAGTCCTCAGACTCTTTTGGCTGGCATGAACAAATTTTTGTCTCAGCTCGAAATTACA
TTCAGAAGAGACCCCAACAACTACAGGCCACGAATAAATAAGCTCAATTCAATCAAGGATGTAG
AACAAAAGAAGAGTGGAAACTACTTTTTCTTGGATGATTAGATTGAGTCTGAACTTATAAGCCA
TTTACTTACTGGGATTTTTATCATATAAAACTTTAATCAGGTTTTATGGCCCCACATACTCTGG
AGCTTGAAGTATGATTTTCTTAATGTGACATCAAAAAGCCAGTTGTCTTGTAAATTGTTGTTTA
AGAACTATTTTGTTCTTAAGATTAAACCTCTGTGCATACTACATGAACATGGAGACATTTCAGA
TTATCAGTTACCTCCAGATTTTCACAATCTACGGGGAGATTTTCAGTTGTATATTATATTCATG
TACCAAATGCTTCCTGGTGTTGCCCATCTTTAAAATCTTGGATAAAATCTGTACTTACCTGTTT
GCTAAGTGTACCAGTATAACAGAACTGCCCCCTTCTAAAAAGCCAGTCACAGACTTGCTGCCAA
AGTCTGATACATAAGCATCAGGGCTATATTTGCTACTTGTGTTCAGTGTGTGCTTCCAAGGAAC
AGTGTCTGCTACAAACACCATTGTTGGAAGATGTTGATGACCAACTTATGCATTGTTTTTAATG
AGTTTTTGGTGCTTTTGAACATCTGTCAAAATTTATTTCAGTGCCCTAATTTAACTTTTTTTTT
TTAGTTCTTACATTCTATAACAACATTCACAGTAATGTTACTTTTATAAATATATAATCACTGA
TCAAGATTAGGGAGGAGGCATTTCTGAAGACTATTTGCTTCCTGCAGAACTATAGGCTTGGGCT
GGGGAGATGGTTCAGTCAGTAAGTACAAGCTGCACGCTCATGAGGACCATATTTGAGACTTTAG
TAGAAGTGAAGTCCAGCAGATCCCTAAAGCCCACTGGCCTGCCAGCCTAACACAGTCTATGAGC
ACATTCAGTAGAAGGTCCTGTCTTAAAAGCTAAGTGGACAGTAATTGAGGAAGACACTCTGGCA
CCAACACACACACACAAAACCCAACCGATACAGTCTTTATAGTTGGTGCCTAAGTATCTGGATT
TTAGGGTTTCGGTTTTAATTTTGTTTTGAGACAGCTTGTCGTCCTATAGCCCAAGCTGGCCTCA
AATTAGGTATCCAAGGACAACCTTGAATTTCTCAGCCCACTACCTAGGCTTGGATTACACAGTG
CTGAGGATCAAACCCAGGGCTTTGTGTGTGCTAGGCAAGCACTCTAACAACTGAGCTACATCCC
CAGCCCTACATATTTAGACTCCAGAGTCTTCTGTTGAGCAACCAAGGACAACCTAAAACAACTT
CTCCAGTGAGTGCAGGGAAATAGCAATACAAAGTGTCCATTGCTGCAGTGCATACTCATTTGTT
GGATACAAAGGACATTATCCACATTTTACTAATATGCCAAACTGGAATTATGAGGAAGGTGGAT
TACAATGAACAGGGCAGGCAGAACAGGAAAATTAGAAAGTATTTGACAAGACTTTAGAACTTTA
AATAATAGGTCTGATTAATTTGCAGACAATGATAGAAAGTTTGTTTTGACTGATACCCATTAGG
CTTTCTAAAAATGAATTTATATAATCCATAAATATGTATCTGTTGTAAAGGAACACAAAGTATA
TGGAATAAAATCTCCCTTTATCAGTTTCTGAGCTTACCGGTGTGTGGTCATTCTTTCCTTCACT
ATGTACTTAATCTTGTTATGGGAATATACTAAAATATATTTGTGAATATTACAGATACAAAGTT
CATCCACCTTAATGCTAATGACAATATGTGAATAAGAGTATTTTTGTGCAAATGAAATTTGAAA
ATACAAAATCAGATATTAAACTTTTTTTGACTTCTTT

hide sequence

RefSeq Acc Id:

NR_152614

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	8	80,410,071 - 80,438,369 (-)	NCBI
GRCm38	8	79,683,442 - 79,711,740 (-)	NCBI

Sequence:

show sequence

AACGTCATCACTCCCTCCAGGGCGCCGACTCTGCGCTCTGTCGCGCACGCGCACTATGCCCTCA
TGCCTTGCGCGAGGCGGCGGCTGTGCACCGCCATCTTTGCCGGTGGCGGTAAGAACACGCTGTG
TGCTAAGACCTGACGGCTAGCGCTGCTTTGGCTACTGCACGCCCCGCTGTAAGGGGCCCGCTGT
CTCCAGAAGAACTGGATATTCTTTGTTACAATTATGGCAGACAAATTAACAAGAATTGCTATTG
TCAACCACGACAAATGCAAACCTAAGAAATGTCGACAGGAGTGCAAAAAGAGTTGCCCTGTGGT
TCGGATGGGAAAATTGTGCATAGAAGTTACACCCCAGAGCAAAATAGCATGGATTTCTGAAACT
CTCTGTATTGGTTGTGGTATTTGTATTAAGAAATGTCCCTTTGGCGCCTTATCAATTGTCAATT
TGCCAAGCAACTTGGAAAAAGAAACAACACATCGCTACTGTGCCAATGCCTTCAAGCTTCACAG
GTTGCCTATCCCTCGTCCAGGTGAAGTTTTGGGATTAGTTGGAACTAATGGTATTGGAAAGTCA
ACTGCACTAAAAATTTTAGCAGGAAAACAAAAGCCAAACCTTGGAAAGTATGATGATCCACCTG
ATTGGCAAGAGATTTTGACTTATTTCCGTGGATCTGAATTACAAAATTACTTTACCAAGATTCT
CGAAGATGACCTAAAAGCCATTATCAAACCTCAATATGTAGACCAAATTCCCAAGGCTGCAAAG
GGGACAGTGGGCTCTATTCTGGACCGAAAAGATGAAACAAAGACACAGGCAATTGTATGTCAGC
AGCTTGATTTAACTCACCTTAAAGAACGAAATGTCGAAGATCTTTCAGGAGGAGAGTTGCAGAG
ATTTGCTTGTGCTGTCGTTTGCATACAAAAGGCTGATATTTTTATGTTTGATGAACCTTCTAGT
TACCTCGATGTCAAGCAACGTTTAAAGGCTGCCATTACGATTCGATCTCTAATAAATCCAGATA
GATATATCATTGTGGTGGAGCATGATCTAAGTGTATTAGACTATCTCTCTGACTTCATCTGCTG
TCTATATGGGGTACCGAGTGCTTATGGTGTTGTCACGATGCCTTTTAGTGTAAGAGAAGGCATA
AATATATTTTTGGATGGCTATGTTCCAACAGAGAACCTGAGGTTCAGGGATGCGTCGCTTGTTT
TTAAGGTAGCTGAGACAGCAAATGAAGAAGAAGTTAAAAAGATGTGCATGTATAAATATCCCGG
GATGAAGAAAAAGATGGGAGAGTTCGAGCTAGCAATTGTAGCTGGAGAGTTCACGGACTCTGAG
ATCATGGTGATGCTGGGGGAGAATGGTACAGGTAAAACTACATTTATCAGAATGCTTGCTGGAA
GGCTTAAACCAGATGAAGGAGGAGAAGTGCCAGTTCTAAATGTCAGTTATAAGCCACAGAAAAT
CAGTCCCAAATCAACAGGAAGTGTTCGCCAGTTACTGCATGAAAAGATCAGAGATGCTTACACG
CATCCGCAGTTTGTGACTGATGTAATGAAGCCCCTACAGATTGAAAACATCATTGACCAAGAGG
TACAGACATTGTCTGGTGGTGAACTTCAGCGAGTAGCTTTAGCTCTTTGTTTGGGCAAACCTGC
TGACGTCTATTTGATTGATGAACCTTCTGCATATTTGGATTCTGAGCAAAGATTAATGGCAGCT
CGGGTCGTCAAACGGTTTGCAATTGTGTTCCAGTTTCATTCTCCATGCAAAGAAGACAGCTTTT
GTTGTAGAACATGACTTCATCATGGCCACCTATCTAGCAGATCGCGTCATCGTTTTTGATGGTG
TTCCATCAAAGAACACAGTTGCAAACAGTCCTCAGACTCTTTTGGCTGGCATGAACAAATTTTT
GTCTCAGCTCGAAATTACATTCAGAAGAGACCCCAACAACTACAGGCCACGAATAAATAAGCTC
AATTCAATCAAGGATGTAGAACAAAAGAAGAGTGGAAACTACTTTTTCTTGGATGATTAGATTG
AGTCTGAACTTATAAGCCATTTACTTACTGGGATTTTTATCATATAAAACTTTAATCAGGTTTT
ATGGCCCCACATACTCTGGAGCTTGAAGTATGATTTTCTTAATGTGACATCAAAAAGCCAGTTG
TCTTGTAAATTGTTGTTTAAGAACTATTTTGTTCTTAAGATTAAACCTCTGTGCATACTACATG
AACATGGAGACATTTCAGATTATCAGTTACCTCCAGATTTTCACAATCTACGGGGAGATTTTCA
GTTGTATATTATATTCATGTACCAAATGCTTCCTGGTGTTGCCCATCTTTAAAATCTTGGATAA
AATCTGTACTTACCTGTTTGCTAAGTGTACCAGTATAACAGAACTGCCCCCTTCTAAAAAGCCA
GTCACAGACTTGCTGCCAAAGTCTGATACATAAGCATCAGGGCTATATTTGCTACTTGTGTTCA
GTGTGTGCTTCCAAGGAACAGTGTCTGCTACAAACACCATTGTTGGAAGATGTTGATGACCAAC
TTATGCATTGTTTTTAATGAGTTTTTGGTGCTTTTGAACATCTGTCAAAATTTATTTCAGTGCC
CTAATTTAACTTTTTTTTTTTAGTTCTTACATTCTATAACAACATTCACAGTAATGTTACTTTT
ATAAATATATAATCACTGATCAAGATTAGGGAGGAGGCATTTCTGAAGACTATTTGCTTCCTGC
AGAACTATAGGCTTGGGCTGGGGAGATGGTTCAGTCAGTAAGTACAAGCTGCACGCTCATGAGG
ACCATATTTGAGACTTTAGTAGAAGTGAAGTCCAGCAGATCCCTAAAGCCCACTGGCCTGCCAG
CCTAACACAGTCTATGAGCACATTCAGTAGAAGGTCCTGTCTTAAAAGCTAAGTGGACAGTAAT
TGAGGAAGACACTCTGGCACCAACACACACACACAAAACCCAACCGATACAGTCTTTATAGTTG
GTGCCTAAGTATCTGGATTTTAGGGTTTCGGTTTTAATTTTGTTTTGAGACAGCTTGTCGTCCT
ATAGCCCAAGCTGGCCTCAAATTAGGTATCCAAGGACAACCTTGAATTTCTCAGCCCACTACCT
AGGCTTGGATTACACAGTGCTGAGGATCAAACCCAGGGCTTTGTGTGTGCTAGGCAAGCACTCT
AACAACTGAGCTACATCCCCAGCCCTACATATTTAGACTCCAGAGTCTTCTGTTGAGCAACCAA
GGACAACCTAAAACAACTTCTCCAGTGAGTGCAGGGAAATAGCAATACAAAGTGTCCATTGCTG
CAGTGCATACTCATTTGTTGGATACAAAGGACATTATCCACATTTTACTAATATGCCAAACTGG
AATTATGAGGAAGGTGGATTACAATGAACAGGGCAGGCAGAACAGGAAAATTAGAAAGTATTTG
ACAAGACTTTAGAACTTTAAATAATAGGTCTGATTAATTTGCAGACAATGATAGAAAGTTTGTT
TTGACTGATACCCATTAGGCTTTCTAAAAATGAATTTATATAATCCATAAATATGTATCTGTTG
TAAAGGAACACAAAGTATATGGAATAAAATCTCCCTTTATCAGTTTCTGAGCTTACCGGTGTGT
GGTCATTCTTTCCTTCACTATGTACTTAATCTTGTTATGGGAATATACTAAAATATATTTGTGA
ATATTACAGATACAAAGTTCATCCACCTTAATGCTAATGACAATATGTGAATAAGAGTATTTTT
GTGCAAATGAAATTTGAAAATACAAAATCAGATATTAAACTTTTTTTGACTTCTTT

hide sequence

Protein Sequences


Protein RefSeqs	NP_056566	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC24730	(Get FASTA)	NCBI Sequence Viewer
	AAH05422	(Get FASTA)	NCBI Sequence Viewer
	AAH66794	(Get FASTA)	NCBI Sequence Viewer
	AAH66836	(Get FASTA)	NCBI Sequence Viewer
	BAC40245	(Get FASTA)	NCBI Sequence Viewer
	BAE27718	(Get FASTA)	NCBI Sequence Viewer
	BAE39277	(Get FASTA)	NCBI Sequence Viewer
	BAE39466	(Get FASTA)	NCBI Sequence Viewer
	BAE39748	(Get FASTA)	NCBI Sequence Viewer
	EDL10876	(Get FASTA)	NCBI Sequence Viewer
	P61222	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_056566 ⟸ NM_015751

- UniProtKB:

P61222 (UniProtKB/Swiss-Prot), Q3TJM9 (UniProtKB/TrEMBL), Q3UHY8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKK
CPFGALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQK
PNLGKYDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAAKGTVGSILDRKD
ETKTQAIVCQQLDLTHLKERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYLDVKQRLKAA
ITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGYVPTE
NLRFRDASLVFKVAETANEEEVKKMCMYKYPGMKKKMGEFELAIVAGEFTDSEIMVMLGENGTG
KTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKISPKSTGSVRQLLHEKIRDAYTHPQFVTDVMKP
LQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRLMAARVVKRFILHAK
KTAFVVEHDFIMATYLADRVIVFDGVPSKNTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPR
INKLNSIKDVEQKKSGNYFFLDD

hide sequence

RefSeq Acc Id:

ENSMUSP00000079379 ⟸ ENSMUST00000080536

Protein Domains

4Fe-4S ferredoxin-type ABC transporter

Promoters

RGD ID:

8667555

Promoter ID:

EPDNEW_M11808

Type:

initiation region

Name:

Abce1_1

Description:

Mus musculus ATP-binding cassette, sub-family E , member 1 ,transcript variant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	8	79,711,677 - 79,711,737	EPDNEW

RGD ID:

6842761

Promoter ID:

MM_KWN:54952

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_015751, NM_026904, UC009MIU.1, UC009MIW.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	8	82,234,781 - 82,235,797 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1195458	AgrOrtholog
Ensembl Genes	ENSMUSG00000058355	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSMUSP00000079379	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000080536	ENTREZGENE, UniProtKB/Swiss-Prot
InterPro	4Fe4S_Fe-S-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	4Fe4S_Fe_S_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	AAA+_ATPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ABC_transporter-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ABC_transporter_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RLI1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RLI_dom_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RNaseL-inhib_metal-bd_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:24015	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:1195458	ENTREZGENE
NCBI Gene	24015	ENTREZGENE
PANTHER	PTHR19248	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	ABC_tran	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Fer4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	RLI	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Abce1	PhenoGen
PRINTS	ABCEFAMILY	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	4FE4S_FER_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	4FE4S_FER_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ABC_TRANSPORTER_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ABC_TRANSPORTER_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	AAA	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	ABCE1_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q3TIU8_MOUSE	UniProtKB/TrEMBL
	Q3TJM9	ENTREZGENE, UniProtKB/TrEMBL
	Q3UHY8	ENTREZGENE, UniProtKB/TrEMBL
	Q6NXX7_MOUSE	UniProtKB/TrEMBL
	Q8C2N8_MOUSE	UniProtKB/TrEMBL
UniProt Secondary	O88793	UniProtKB/Swiss-Prot
	Q13181	UniProtKB/Swiss-Prot
	Q13864	UniProtKB/Swiss-Prot
	Q96AL0	UniProtKB/Swiss-Prot
	Q96B10	UniProtKB/Swiss-Prot
	Q99K66	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations