Ccdc174 (coiled-coil domain containing 174)

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Gene: Ccdc174 (coiled-coil domain containing 174) Mus musculus

Analyze

Symbol:

Ccdc174

Name:

coiled-coil domain containing 174

RGD ID:

1313126

MGI Page

MGI

Description:

Orthologous to human CCDC174 (coiled-coil domain containing 174); INTERACTS WITH 1,2-dimethylhydrazine; 4-hydroxyphenyl retinamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

C130022K22Rik; coiled-coil domain-containing protein 174; hypothetical protein LOC232236; uncharacterized protein C3orf19 homolog

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCDC174 (coiled-coil domain containing 174)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):	Ccdc174 (coiled-coil domain containing 174)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Ccdc174 (coiled-coil domain containing 174)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCDC174 (coiled-coil domain containing 174)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCDC174 (coiled-coil domain containing 174)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccdc174 (coiled-coil domain containing 174)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCDC174 (coiled-coil domain containing 174)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	CCDC174 (coiled-coil domain containing 174)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccdc174 (coiled-coil domain containing 174)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Ccdc174 (coiled-coil domain containing 174)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	CCDC174 (coiled-coil domain containing 174)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Danio rerio (zebrafish):	ccdc174 (coiled-coil domain containing 174)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam\|ZFIN)
Caenorhabditis elegans (roundworm):	C37A2.8	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|PANTHER\|Roundup\|TreeFam)
Drosophila melanogaster (fruit fly):	CG7183	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|Roundup\|TreeFam)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	91,819,983 - 91,876,830 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	91,855,034 - 91,876,824 (+)	Ensembl
GRCm38	6	91,843,154 - 91,899,849 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	91,878,053 - 91,899,843 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	91,828,047 - 91,849,842 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	91,843,576 - 91,865,352 (+)	NCBI			mm8
Celera	6	93,772,237 - 93,794,129 (+)	NCBI		Celera
Cytogenetic Map	6	D1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Infantile Hypotonia with Psychomotor Retardation (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (ISO)

1,2-dimethylhydrazine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

4-hydroxyphenyl retinamide (EXP)

aflatoxin B1 (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

casticin (EXP)

cisplatin (ISO)

cocaine (ISO)

copper(II) sulfate (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

folic acid (EXP)

formaldehyde (ISO)

leflunomide (ISO)

methoxyacetic acid (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

Monobutylphthalate (ISO)

rotenone (ISO)

sunitinib (ISO)

tetrachloromethane (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

molecular_function (ND)

protein binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal embryo size (IEA)

abnormal embryo turning (IEA)

embryonic lethality between implantation and somite formation (IEA)

embryonic lethality prior to organogenesis (IEA)

preweaning lethality, complete penetrance (IEA)

References

References - curated


1.	RGD automated import pipeline
2.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:12520002	PMID:14610273	PMID:15489334	PMID:16141072	PMID:16141073
PMID:21267068

Genomics

Comparative Map Data

Ccdc174
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	91,819,983 - 91,876,830 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	91,855,034 - 91,876,824 (+)	Ensembl
GRCm38	6	91,843,154 - 91,899,849 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	91,878,053 - 91,899,843 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	91,828,047 - 91,849,842 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	91,843,576 - 91,865,352 (+)	NCBI			mm8
Celera	6	93,772,237 - 93,794,129 (+)	NCBI		Celera
Cytogenetic Map	6	D1	NCBI

CCDC174
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	3	14,651,746 - 14,672,659 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	3	14,651,762 - 14,672,659 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	3	14,693,269 - 14,714,162 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	14,668,257 - 14,689,170 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	3	14,668,272 - 14,689,164	NCBI
Celera	3	14,631,500 - 14,652,414 (+)	NCBI
Cytogenetic Map	3	p25.1	NCBI
HuRef	3	14,629,033 - 14,649,937 (+)	NCBI		HuRef
CHM1_1	3	14,644,329 - 14,665,233 (+)	NCBI		CHM1_1

Ccdc174
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	124,392,183 - 124,419,035 (+)	NCBI
Rnor_6.0 Ensembl	4	123,760,743 - 123,787,528 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	123,760,708 - 123,787,529 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	189,474,030 - 189,501,580 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	126,074,136 - 126,100,614 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	126,318,976 - 126,345,455 (+)	NCBI
Celera	4	113,310,952 - 113,336,955 (+)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

Ccdc174
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	17,201,027 - 17,218,726 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955429	17,201,563 - 17,218,726 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC174
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	14,913,345 - 14,934,261 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	14,913,328 - 14,934,261 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	14,574,082 - 14,595,025 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

CCDC174
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	20	4,753,542 - 4,776,032 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	20	4,753,433 - 4,778,446 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Ccdc174
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936602	360,048 - 374,960 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC174
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	69,895,324 - 69,915,655 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	69,898,803 - 69,918,896 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

CCDC174
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	50,595,136 - 50,616,165 (+)	NCBI
ChlSab1.1 Ensembl	22	50,595,175 - 50,614,691 (+)	Ensembl

Ccdc174
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624872	1,176,317 - 1,193,344 (-)	NCBI

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	1	117500000	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139100000	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96656149	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96656149	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96656149	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96656149	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38669625	92607450	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45314059	128835032	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46935985	136423692	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48720000	125360000	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48720000	148450000	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48726556	125356785	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52161713	116155267	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58447583	92447710	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58540433	92540433	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60057680	94057799	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63484738	97484905	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66713869	100714031	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70425898	104426034	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70425898	104426034	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70425898	104426034	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71322621	93464093	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71575060	105575178	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71981024	105981170	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71981024	105981170	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73500000	134700000	Mouse
1301320	Ots1_m	ovarian teratoma susceptibility 1 (mouse)			Not determined		6	75447583	104503555	Mouse
1301571	Arrd1_m	age-related retinal degeneration 1 (mouse)			Not determined		6	75544356	92607450	Mouse
1300674	Nidd3n_m	non-insulin-dependent diabetes mellitus 3 in NSY (mouse)			Not determined		6	75544356	94225955	Mouse
10412195	Efw_m	epididymal fat weight (mouse)			Not determined		6	75544356	94225955	Mouse
10043901	Pfat5_m	predicted fat percentage 5 (mouse)			Not determined		6	75607306	109607450	Mouse
10412208	Cypr4_m	cytokine production 4 (mouse)			Not determined		6	75716503	109716697	Mouse
1357875	Pfat2_m	predicted fat percentage 2 (mouse)			Not determined		6	76463949	110464093	Mouse
13824985	Alh1_m	amplitude of lateral head displacement 1 (mouse)					6	78000000	97000000	Mouse
4141376	Dbm1_m	diabetes modifier 1 (mouse)			Not determined		6	78629504	121115387	Mouse
14696731	Pairq1_m	P. aeruginosa infection resistance QTL 1 (mouse)					6	81500000	102200000	Mouse
10043864	T2dm4sa_m	type 2 diabetes mellitus 4 in SMXA RI mice (mouse)			Not determined		6	83713869	147052561	Mouse
11251720	Ewc4_m	ethanol withdrawal and consumption 4 (mouse)					6	84122513	118122513	Mouse
1301687	Mnic2_m	macronutrient intake (mouse)			Not determined		6	86806805	113544602	Mouse
1301744	Hdlq11_m	HDL QTL 11 (mouse)			Not determined		6	87503360	121503555	Mouse
1301262	Gasa3_m	gastritis type A susceptibility locus 3 (mouse)			Not determined		6	89005405	123005603	Mouse
1301244	Ichs_m	immediate cutaneous hypersensitivity QTL (mouse)			Not determined		6	90795610	124795846	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	641
Count of miRNA genes:	415
Interacting mature miRNAs:	468
Transcripts:	ENSMUST00000037783, ENSMUST00000136090, ENSMUST00000138868, ENSMUST00000139240, ENSMUST00000147188, ENSMUST00000149546, ENSMUST00000151378
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_172730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030255347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030255348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036166055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036166056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC168852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK039818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK046253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK051852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK081505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK155581	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK156259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK170492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK170727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC016607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC038871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC051147	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY624970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000037783 ⟹ ENSMUSP00000049280

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	91,878,053 - 91,899,843 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000136090 ⟹ ENSMUSP00000146317

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	91,878,053 - 91,899,843 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000138868

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	91,878,053 - 91,884,987 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000139240

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	91,878,075 - 91,888,317 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000147188

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	91,892,347 - 91,895,293 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000149546

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	91,878,072 - 91,880,511 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000151378

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	91,892,804 - 91,895,339 (+)	Ensembl

RefSeq Acc Id:

NM_172730 ⟹ NP_766318

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	91,855,034 - 91,876,829 (+)	NCBI
GRCm38	6	91,878,053 - 91,899,848 (+)	NCBI
MGSCv37	6	91,828,047 - 91,849,842 (+)	RGD
Celera	6	93,772,237 - 93,794,129 (+)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

GGTTCTGCTGCCGGGTGGGGGTGGCGGACTCGTAGGGTCTGACTGAGGCCACAGGGAGGCTGCG
TCTTGGGACTGGACGCCTTGGCGGGACGATGGACCGAAAGAAAAAGCCTTTGGACGTTACAGCC
TCCTCGTTGGTAGATCTTAAGGCGGAGCTCTTTCGAAAACAAGAAGAATTCAAACAAGAAAAAC
TTCTAAAAGATTCTGGAGTTTTTGGAAAACCAAAGACAATTAATAAGAAGCCAAGTATCTGGAG
CAAACAAAATGCAGGTGTTACAAGTCGAGCAGAGAAAGATGCGGAACAAAAGCTTGAGGAGCAG
AAGACTCTAGACAAAGCAAGGGAAAAATTGGAAGAAAAGGCCAAATTATATGAAAAGATGACTA
AAGGAGATTTTCTAGATGAGGAAGTGGAGGACATGTACCTTGTGGATTTCACACAGAAGATCAT
AGACAAGCGAAAAGAAATGGAGGTGCTTGGTGCCACGAGAGAGTCCCAAATCGAGGAAGAGAGA
GATGATGATGATAAAGAAGAGTTTTCTGACAAAGACATACCTCCTCCTCAAGACCCCAGTGAGG
AATGGGTGGATTACGTGGACTCTTTGGGCCGATCCCGGCGCTGCATGAGAAAGGATTTACCAAG
TCTATTGGAGATGGATAAAAATCTTCAGGGGAGACTTTTTGTTAGTCCTGCCAATGAAAAAACT
TTGTTATCTGAAGACATGAGGAAAGAACTTCAGCGTCAGCAATGGGAGGAAGAAGAAAGGGAAG
CCTTGAAAAAGCCAATGGGGCCCATCCATTATGAAGACATCCGGGAAAATGAGGCCCGACAACT
TGGTGTTGGGTATTTTGCCTTTGCCCGAGACAAAGAGTTAAGAAACAAGCAAATGAAAACTTTA
GAGATGCTTCGTGAACAGACAACAGATCAGAGAATAAAACGAGAAAACATAAAGGAAAAGAGAA
AAGCTATGTTAGAAGCAAGACTGGCAAAGCTTCGACAAAAGAAGATGAAAAAATCAAAAGAGGA
TGGAACTGAAGAAGAAGGCAGAGAAGCAGATGGAGTTGTTCCTGAGCCCTCAGAGCCAAAGCCT
GTACCTGCCCCAGCTCCTGTGGCCCAGAACAGCAAGGTGGAGGTCATCATTCAGGAGAGGAGGG
ACACCAAGCCTGGGGTGCCACACATCCGAGAGTGGGACCGAGGGAAAGACTTTTCCTTTGGATT
CTGGTCGAAGAAGCAGTCAGAACTCCGAGCTGAGCGAGATCCTGAGTTTGCCCCACCTTCAAAT
TACTTTGTGGGTCAAAAGAGAACTGCTCCTATGAGTAGCCAGCCACAGAGCAGACCAGGATCAG
CACCAAGTGACTTGGGACATTCCTCTGGCCAGAGCCAGGAACCCAGCTCTTCACACACATCCAC
TCCTGCCTCTGAAAGCTCACCACAAGCGCCCACAGTCACTTTCCAAACACTAGATGATATGATA
TCTTATTATAAACAAGTCACATGACCTGTAAAGCATGCTGGTTGTATTTGTCTCATAGAAGTCA
GTCAGGACTGAGTTTTACTTCTTTCTTCCTGTACTTTCCCAGGGAGCACAGGCTTGAGGCCACA
TTAGTTGACAGGGAGGAGTGAGAGCTCATTGACTCTTAGGTTGTTCATTTTCTTACCGCTTGGT
ATAGGGGGACTATCTTCTCTCCATGCTGACCCAGCTGTGACTCATTTGGGGTTCCAGGTGTGTA
AATTATAAATGCTAATCTGAGAAATACTG

hide sequence

RefSeq Acc Id:

XM_030255347 ⟹ XP_030111207

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	91,819,983 - 91,876,830 (+)	NCBI
GRCm38	6	91,843,154 - 91,899,849 (+)	NCBI

Sequence:

show sequence

CTGTGGAGCCGGGGATGGCAGCTGCCTTTTGCCTCACCTGGTCCGGGACTCGCGGCCCTAGCAA
TTCCTAATTAGCACCAAACCCAAACTTTGCTCTGTTGTGACAGCCCGGCGCAAGTCTTTCCACT
GCCGCTTCACCCTCATCCTCTACCCTGCGGGTGGTGAAGACAACAGATGGCCAATTGCGATCAA
TTCCAACCCTCTGACCTTCTCAAAATGACGACGTAGCGACTAGGGACCTCATACTGACGCTTTC
AAGATGGCGCCGAGGTCGTAAATCCAAGTCGCAAAATGACGCAAACTCAGCGTCCCTATCAAAG
ACACTTCCGGTTCTGCTGCCGGGTGGGGGTGGCGGACTCGTAGGGTCTGACTGAGGCCACAGGG
AGGCTGCGTCTTGGGACTGGACGCCTTGGCGGGACGATGGACCGAAAGAAAAAGCCTTTGGACG
TTACAGCCTCCTCGTTGGTAGATCTTAAGGCGGAGCTCTTTCGAAAACAAGAAGAATTCAAACA
AGAAAAACTTCTAAAAGATTCTGGAGTTTTTGGAAAACCAAAGACAATTAATAAGAAGCCAAGT
ATCTGGAGCAAACAAAATGCAGGTGTTACAAGTCGAGCAGAGAAAGATGCGGAACAAAAGCTTG
AGGAGCAGAAGACTCTAGACAAAGCAAGGGAAAAATTGGAAGAAAAGGCCAAATTATATGAAAA
GATGACTAAAGGAGATTTTCTAGATGAGGAAGTGGAGGACATGTACCTTGTGGATTTCACACAG
AAGATCATAGACAAGCGAAAAGAAATGGAGGTGCTTGGTGCCACGAGAGAGTCCCAAATCGAGG
AAGAGAGAGATGATGATGATAAAGAAGAGTTTTCTGACAAAGACATACCTCCTCCTCAAGACCC
CAGTGAGGAATGGGTGGATTACGTGGACTCTTTGGGCCGATCCCGGCGCTGCATGAGAAAGGAT
TTACCAAGTCTATTGGAGATGGATAAAAATCTTCAGGGGAGACTTTTTGTTAGTCCTGCCAATG
AAAAAACTTTGTTATCTGAAGACATGAGGAAAGAACTTCAGCGTCAGCAATGGGAGGAAGAAGA
AAGGGAAGCCTTGAAAAAGCCAATGGGGCCCATCCATTATGAAGACATCCGGGAAAATGAGGCC
CGACAACTTGGTGTTGGGTATTTTGCCTTTGCCCGAGACAAAGAGTTAAGAAACAAGCAAATGA
AAACTTTAGAGATGCTTCGTGAACAGACAACAGATCAGAGAATAAAACGAGAAAACATAAAGGA
AAAGAGAAAAGCTATGTTAGAAGCAAGACTGGCAAAGCTTCGACAAAAGAAGATGAAAAAATCA
AAAGAGGATGGAACTGAAGAAGAAGGCAGAGAAGCAGATGGAGTTGTTCCTGAGCCCTCAGAGC
CAAAGCCTGTACCTGCCCCAGCTCCTGTGGCCCAGAACAGCAAGGTGGAGGTCATCATTCAGGA
GAGGAGGGACACCAAGCCTGGGGTGCCACACATCCGAGAGTGGGACCGAGGGAAAGACTTTTCC
TTTGGATTCTGGTCGAAGAAGCAGTCAGAACTCCGAGCTGAGCGAGATCCTGAGTTTGCCCCAC
CTTCAAATTACTTTGTGGGTCAAAAGAGAACTGCTCCTATGAGTAGCCAGCCACAGAGCAGACC
AGGATCAGCACCAAGTGACTTGGGACATTCCTCTGGCCAGAGCCAGGAACCCAGCTCTTCACAC
ACATCCACTCCTGCCTCTGAAAGCTCACCACAAGCGCCCACAGTCACTTTCCAAACACTAGATG
ATATGATATCTTATTATAAACAAGTCACATGACCTGTAAAGCATGCTGGTTGTATTTGTCTCAT
AGAAGTCAGTCAGGACTGAGTTTTACTTCTTTCTTCCTGTACTTTCCCAGGGAGCACAGGCTTG
AGGCCACATTAGTTGACAGGGAGGAGTGAGAGCTCATTGACTCTTAGGTTGTTCATTTTCTTAC
CGCTTGGTATAGGGGGACTATCTTCTCTCCATGCTGACCCAGCTGTGACTCATTTGGGGTTCCA
GGTGTGTAAATTATAAATGCTAATCTGAGAAATACTGA

hide sequence

RefSeq Acc Id:

XM_030255348 ⟹ XP_030111208

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	91,854,891 - 91,876,830 (+)	NCBI
GRCm38	6	91,877,902 - 91,899,849 (+)	NCBI

Sequence:

show sequence

GCCAATTGCGATCAATTCCAACCCTCTGACCTTCTCAAAATGACGACGTAGCGACTAGGGACCT
CATACTGACGCTTTCAAGATGGCGCCGAGGTCGTAAATCCAAGTCGCAAAATGACGCAAACTCA
GCGTCCCTATCAAAGACACTTCCGGTTCTGCTGCCGGGTGGGGGTGGCGGACTCGTAGGGTCTG
ACTGAGGCCACAGGGAGGCTGCGTCTTGGGACTGGACGCCTTGGCGGGACGATGGACCGAAAGA
AAAAGCCTTTGGACGTTACAGCCTCCTCGTTGGTAGATCTTAAGGCGGAGCTCTTTCGAAAACA
AGAAGAATTCAAACAAGAAAAACTTCTAAAAGATTCTGGAGTTTTTGGAAAACCAAAGACAATT
AATAAGAAGCCAAGTATCTGGAGCAAACAAAATGCAGGTGTTACAAGTCGAGCAGAGAAAGATG
CGGAACAAAAGCTTGAGGAGCAGAAGACTCTAGACAAAGCAAGGGAAAAATTGGAAGAAAAGGC
CAAATTATATGAAAAGATGACTAAAGGAGATTTTCTAGGCAGTTTGTTAGGAGCCATCAGGGAC
TGGGCAGTATAGGGAGCCAGTTCTGAAGCCTTCACAGCAGATCCAGTGGAGCAGGAGAGCACAG
CACCAAGGAGGCGGTTGAACTGGAGCAGCCTTGCGTTCAGTGACAGCCATGCATGTGGGAAAAA
TGAGGAAGTGGAGGACATGTACCTTGTGGATTTCACACAGAAGATCATAGACAAGCGAAAAGAA
ATGGAGGTGCTTGGTGCCACGAGAGAGTCCCAAATCGAGGAAGAGAGAGATGATGATGATAAAG
AAGAGTTTTCTGACAAAGACATACCTCCTCCTCAAGACCCCAGTGAGGAATGGGTGGATTACGT
GGACTCTTTGGGCCGATCCCGGCGCTGCATGAGAAAGGATTTACCAAGTCTATTGGAGATGGAT
AAAAATCTTCAGGGGAGACTTTTTGTTAGTCCTGCCAATGAAAAAACTTTGTTATCTGAAGACA
TGAGGAAAGAACTTCAGCGTCAGCAATGGGAGGAAGAAGAAAGGGAAGCCTTGAAAAAGCCAAT
GGGGCCCATCCATTATGAAGACATCCGGGAAAATGAGGCCCGACAACTTGGTGTTGGGTATTTT
GCCTTTGCCCGAGACAAAGAGTTAAGAAACAAGCAAATGAAAACTTTAGAGATGCTTCGTGAAC
AGACAACAGATCAGAGAATAAAACGAGAAAACATAAAGGAAAAGAGAAAAGCTATGTTAGAAGC
AAGACTGGCAAAGCTTCGACAAAAGAAGATGAAAAAATCAAAAGAGGATGGAACTGAAGAAGAA
GGCAGAGAAGCAGATGGAGTTGTTCCTGAGCCCTCAGAGCCAAAGCCTGTACCTGCCCCAGCTC
CTGTGGCCCAGAACAGCAAGGTGGAGGTCATCATTCAGGAGAGGAGGGACACCAAGCCTGGGGT
GCCACACATCCGAGAGTGGGACCGAGGGAAAGACTTTTCCTTTGGATTCTGGTCGAAGAAGCAG
TCAGAACTCCGAGCTGAGCGAGATCCTGAGTTTGCCCCACCTTCAAATTACTTTGTGGGTCAAA
AGAGAACTGCTCCTATGAGTAGCCAGCCACAGAGCAGACCAGGATCAGCACCAAGTGACTTGGG
ACATTCCTCTGGCCAGAGCCAGGAACCCAGCTCTTCACACACATCCACTCCTGCCTCTGAAAGC
TCACCACAAGCGCCCACAGTCACTTTCCAAACACTAGATGATATGATATCTTATTATAAACAAG
TCACATGACCTGTAAAGCATGCTGGTTGTATTTGTCTCATAGAAGTCAGTCAGGACTGAGTTTT
ACTTCTTTCTTCCTGTACTTTCCCAGGGAGCACAGGCTTGAGGCCACATTAGTTGACAGGGAGG
AGTGAGAGCTCATTGACTCTTAGGTTGTTCATTTTCTTACCGCTTGGTATAGGGGGACTATCTT
CTCTCCATGCTGACCCAGCTGTGACTCATTTGGGGTTCCAGGTGTGTAAATTATAAATGCTAAT
CTGAGAAATACTGA

hide sequence

RefSeq Acc Id:

XM_036166055 ⟹ XP_036021948

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	91,820,827 - 91,876,830 (+)	NCBI

RefSeq Acc Id:

XM_036166056 ⟹ XP_036021949

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	91,834,991 - 91,876,830 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_766318	(Get FASTA)	NCBI Sequence Viewer
	XP_030111207	(Get FASTA)	NCBI Sequence Viewer
	XP_030111208	(Get FASTA)	NCBI Sequence Viewer
	XP_036021948	(Get FASTA)	NCBI Sequence Viewer
	XP_036021949	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH16607	(Get FASTA)	NCBI Sequence Viewer
	AAH51147	(Get FASTA)	NCBI Sequence Viewer
	BAC30460	(Get FASTA)	NCBI Sequence Viewer
	BAC38240	(Get FASTA)	NCBI Sequence Viewer
	BAE33645	(Get FASTA)	NCBI Sequence Viewer
	EDK99310	(Get FASTA)	NCBI Sequence Viewer
	EDK99311	(Get FASTA)	NCBI Sequence Viewer
	Q3U155	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_766318 ⟸ NM_172730

- UniProtKB:

Q3U155 (UniProtKB/Swiss-Prot), A0A0R4J0L8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDRKKKPLDVTASSLVDLKAELFRKQEEFKQEKLLKDSGVFGKPKTINKKPSIWSKQNAGVTSR
AEKDAEQKLEEQKTLDKAREKLEEKAKLYEKMTKGDFLDEEVEDMYLVDFTQKIIDKRKEMEVL
GATRESQIEEERDDDDKEEFSDKDIPPPQDPSEEWVDYVDSLGRSRRCMRKDLPSLLEMDKNLQ
GRLFVSPANEKTLLSEDMRKELQRQQWEEEEREALKKPMGPIHYEDIRENEARQLGVGYFAFAR
DKELRNKQMKTLEMLREQTTDQRIKRENIKEKRKAMLEARLAKLRQKKMKKSKEDGTEEEGREA
DGVVPEPSEPKPVPAPAPVAQNSKVEVIIQERRDTKPGVPHIREWDRGKDFSFGFWSKKQSELR
AERDPEFAPPSNYFVGQKRTAPMSSQPQSRPGSAPSDLGHSSGQSQEPSSSHTSTPASESSPQA
PTVTFQTLDDMISYYKQVT

hide sequence

RefSeq Acc Id:	XP_030111207 ⟸ XM_030255347
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_030111208 ⟸ XM_030255348
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSMUSP00000049280 ⟸ ENSMUST00000037783

RefSeq Acc Id:

ENSMUSP00000146317 ⟸ ENSMUST00000136090

RefSeq Acc Id:	XP_036021948 ⟸ XM_036166055
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_036021949 ⟸ XM_036166056
- Peptide Label:	isoform X2

Promoters

RGD ID:

6839017

Promoter ID:

MM_KWN:46932

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

NM_172730, OTTMUST00000058029, OTTMUST00000058031, OTTMUST00000058032, UC009CYJ.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	91,827,774 - 91,828,274 (+)	MPROMDB

RGD ID:

6890462

Promoter ID:

EPDNEW_M8682

Type:

initiation region

Name:

Ccdc174_1

Description:

Mus musculus coiled-coil domain containing 174 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	91,878,073 - 91,878,133	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2444652	AgrOrtholog
Ensembl Genes	ENSMUSG00000034083	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000049280	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUSP00000146317	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000037783	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUST00000136090	UniProtKB/TrEMBL
InterPro	DUF4078	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:232236	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD	MGI:2444652	ENTREZGENE
NCBI Gene	232236	ENTREZGENE
Pfam	DUF4078	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ccdc174	PhenoGen
UniProt	A0A0R4J0L8	ENTREZGENE, UniProtKB/TrEMBL
	A0A0U1RQA8_MOUSE	UniProtKB/TrEMBL
	A0PJ68_MOUSE	UniProtKB/TrEMBL
	CC174_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q8C4Q1_MOUSE	UniProtKB/TrEMBL
UniProt Secondary	Q80XC8	UniProtKB/Swiss-Prot
	Q8CA20	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-09	Ccdc174	coiled-coil domain containing 174	C130022K22Rik	RIKEN cDNA C130022K22 gene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM