Gene: CUNH13orf42 (chromosome unknown C13orf42 homolog) Ictidomys tridecemlineatus |
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Analyze |
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Symbol: |
CUNH13orf42 (Ensembl: C13orf42) |
Name: |
chromosome unknown C13orf42 homolog (Ensembl:chromosome 13 open reading frame 42) |
RGD ID: |
13130122 |
Description: |
ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
LOC110598653; uncharacterized LOC110598653; uncharacterized protein C13orf42 homolog; uncharacterized protein LOC110598653 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
SpeTri2.0 - Squirrel SpeTri2.0 Assembly |
Position: |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404945 | 160,452,088 - 160,482,108 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936565 | 3,936,666 - 3,964,309 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936565 | 3,936,666 - 3,964,309 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Genomics
Comparative Map Data
CUNH13orf42 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404945 | 160,452,088 - 160,482,108 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936565 | 3,936,666 - 3,964,309 (-) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936565 | 3,936,666 - 3,964,309 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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C13orf42 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 13 | 51,082,119 - 51,172,388 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 13 | 51,082,119 - 51,200,252 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 13 | 51,656,255 - 51,746,524 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 13 | 50,556,288 - 50,621,130 (-) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 13 | 32,707,440 - 32,735,212 (-) | NCBI | | Celera | | | Cytogenetic Map | 13 | q14.3 | NCBI | | | | | HuRef | 13 | 32,447,155 - 32,476,357 (-) | NCBI | | HuRef | | | CHM1_1 | 13 | 51,625,681 - 51,654,895 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 13 | 50,297,185 - 50,387,475 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Gm4131 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 14 | 62,699,937 - 62,718,604 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 14 | 62,700,863 - 62,804,370 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 14 | 62,462,488 - 62,481,155 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 14 | 62,463,414 - 62,566,921 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 14 | 63,082,447 - 63,100,602 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 14 | 63,082,447 - 63,100,602 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 14 | 60,225,122 - 60,244,397 (-) | NCBI | | Celera | | | Cytogenetic Map | 14 | D1 | NCBI | | | | |
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C15h13orf42 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 15 | 40,852,879 - 40,877,320 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 15 | 36,674,840 - 36,701,304 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 15 | 36,677,527 - 36,701,211 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 | 15 | 45,559,028 - 45,581,410 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_5.0 | 15 | 49,335,337 - 49,357,187 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 15 | 36,367,122 - 36,389,201 (-) | NCBI | | Celera | | | Cytogenetic Map | 15 | p12 | NCBI | | | | |
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C14H13orf42 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 14 | 52,520,582 - 52,549,232 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 13 | 51,163,370 - 51,193,166 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 13 | 32,216,898 - 32,247,120 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 13 | 50,961,466 - 50,992,126 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | |
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CUNH13orf42 (Chlorocebus sabaeus - green monkey) |
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Expression
Sequence
RefSeq Acc Id: |
ENSSTOT00000034525 ⟹ ENSSTOP00000026408 |
Type: |
CODING |
Position: |
Squirrel Assembly | Chr | Position (strand) | Source |
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SpeTri2.0 Ensembl | NW_004936565 | 3,936,666 - 3,964,309 (-) | Ensembl |
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RefSeq Acc Id: |
XM_021729781 ⟹ XP_021585456 |
Type: |
CODING |
Position: |
Squirrel Assembly | Chr | Position (strand) | Source |
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HiC_Itri_2 | NW_024404945 | 160,452,088 - 160,482,108 (-) | NCBI | SpeTri2.0 | NW_004936565 | 3,936,666 - 3,964,309 (-) | NCBI |
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Sequence: |
ATGCTCAGAAAGATCCACTCCATCTTTAGCTCCAGCCGGCAGAGGAAGGCTGCTGCGGAGAGCC CCTACTGCAACGGAGCCGGTCCCACCGCGAGGCTCATTCGCAGCAGCTCCATGTACGTGGTCGG GGACCACGGCGAGAAATTCAGTGAGTCCTTGAAGAAGTACAGAAGCACGAGCAGCATGGACAGC AGCCTGTACTACCCTCCCCAGGAGGAGGACCGGGCCTGGATGTATTCGCGCACCCAGGACTGTC TGCAGTACCTGCAGGAGCTGCTGGCCCTGCGCAAGAAGTACCTCAACAGCTTCAGCGACCTCAA GGCCCACCGCAGGCAGGGCGTTTCCTCCACCTCCTCCAAATCCTCCAAGGGAGGCAAAAAGGCC TCTGGCCAATCCTCCTCCAAAGAAATAAAGAAACTAACTTCAAAGAAATACTCGCAGTTCAGTG CCGATGTGGCCGAGGCCATCGCCTTCTTCGACTCCATCATTGCAGAGCTGGATACAGAGAGGGG ACCCCGGGTGGCCGAGGCCGACCTGCTGAATGAAGATGTGGATTTTGATGTGGCCACCAGCTCC CGGGAGCACAGCTTGCATTCCAACTGGATCCTGCGGGCCCCGCGCAGACATTCTGAGGACATTG CTGGACAAGCTGGCCACACCCCAGACAGCCAGTTTCGAAGGAGCACGGAGCGCAGGACCATTGG CACCCAGAGGAGACTGGAGAGGCACCCCATTTACTTGCCCAAGGCTGTGGAAGGAGCATTCAGC ACCCTGAAATTTAAGCCCAAAGCCCACAAAAAAGACCTGGGGAGCTCCAGACAGATCCTCTTCG ACTTCTCAGGAGAAGATACGGGATGGGATGTGGAGCTCTTTGCACCGGAGCCCATGGCGTCTCC AGGGGAGGACTACTGTGAGACAGAGAATCCCAAAGGGCAGTGGCTGCTTCGAGAAAGACTATGG GAGCGTTCAGTGCCCTGA
hide sequence
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RefSeq Acc Id: |
XP_021585456 ⟸ XM_021729781 |
- UniProtKB: |
A0A287CYR1 (UniProtKB/TrEMBL) |
- Sequence: |
MLRKIHSIFSSSRQRKAAAESPYCNGAGPTARLIRSSSMYVVGDHGEKFSESLKKYRSTSSMDS SLYYPPQEEDRAWMYSRTQDCLQYLQELLALRKKYLNSFSDLKAHRRQGVSSTSSKSSKGGKKA SGQSSSKEIKKLTSKKYSQFSADVAEAIAFFDSIIAELDTERGPRVAEADLLNEDVDFDVATSS REHSLHSNWILRAPRRHSEDIAGQAGHTPDSQFRRSTERRTIGTQRRLERHPIYLPKAVEGAFS TLKFKPKAHKKDLGSSRQILFDFSGEDTGWDVELFAPEPMASPGEDYCETENPKGQWLLRERLW ERSVP
hide sequence
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RefSeq Acc Id: |
ENSSTOP00000026408 ⟸ ENSSTOT00000034525 |
Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2021-03-26 |
CUNH13orf42 |
chromosome unknown C13orf42 homolog |
LOC110598653 |
uncharacterized LOC110598653 |
Symbol and/or name change |
5135510 |
APPROVED |
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