CUNH13orf42 (chromosome unknown C13orf42 homolog) - Rat Genome Database

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Gene: CUNH13orf42 (chromosome unknown C13orf42 homolog) Ictidomys tridecemlineatus
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Symbol: CUNH13orf42 (Ensembl: C13orf42)
Name: chromosome unknown C13orf42 homolog (Ensembl:chromosome 13 open reading frame 42)
RGD ID: 13130122
Description: ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC110598653; uncharacterized LOC110598653; uncharacterized protein C13orf42 homolog; uncharacterized protein LOC110598653
RGD Orthologs
Human
Mouse
Rat
Bonobo
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945160,452,088 - 160,482,108 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365653,936,666 - 3,964,309 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365653,936,666 - 3,964,309 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
CUNH13orf42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945160,452,088 - 160,482,108 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365653,936,666 - 3,964,309 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365653,936,666 - 3,964,309 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C13orf42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381351,082,119 - 51,172,388 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1351,082,119 - 51,200,252 (-)EnsemblGRCh38hg38GRCh38
GRCh371351,656,255 - 51,746,524 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361350,556,288 - 50,621,130 (-)NCBINCBI36Build 36hg18NCBI36
Celera1332,707,440 - 32,735,212 (-)NCBICelera
Cytogenetic Map13q14.3NCBI
HuRef1332,447,155 - 32,476,357 (-)NCBIHuRef
CHM1_11351,625,681 - 51,654,895 (-)NCBICHM1_1
T2T-CHM13v2.01350,297,185 - 50,387,475 (-)NCBIT2T-CHM13v2.0
Gm4131
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391462,699,937 - 62,718,604 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1462,700,863 - 62,804,370 (-)EnsemblGRCm39 Ensembl
GRCm381462,462,488 - 62,481,155 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1462,463,414 - 62,566,921 (-)EnsemblGRCm38mm10GRCm38
MGSCv371463,082,447 - 63,100,602 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361463,082,447 - 63,100,602 (-)NCBIMGSCv36mm8
Celera1460,225,122 - 60,244,397 (-)NCBICelera
Cytogenetic Map14D1NCBI
C15h13orf42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81540,852,879 - 40,877,320 (-)NCBIGRCr8
mRatBN7.21536,674,840 - 36,701,304 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1536,677,527 - 36,701,211 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01545,559,028 - 45,581,410 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01549,335,337 - 49,357,187 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1536,367,122 - 36,389,201 (-)NCBICelera
Cytogenetic Map15p12NCBI
C14H13orf42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21452,520,582 - 52,549,232 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11351,163,370 - 51,193,166 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01332,216,898 - 32,247,120 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11350,961,466 - 50,992,126 (-)NCBIpanpan1.1PanPan1.1panPan2
CUNH13orf42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1328,960,806 - 28,991,668 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605714,831,246 - 14,862,296 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021729781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000034525   ⟹   ENSSTOP00000026408
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365653,936,666 - 3,964,309 (-)Ensembl
RefSeq Acc Id: XM_021729781   ⟹   XP_021585456
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404945160,452,088 - 160,482,108 (-)NCBI
SpeTri2.0NW_0049365653,936,666 - 3,964,309 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021585456 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000026408.1
GenBank Protein KAG3293115 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021585456   ⟸   XM_021729781
- UniProtKB: A0A287CYR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000026408   ⟸   ENSSTOT00000034525


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000033767 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000034525.1 UniProtKB/TrEMBL
NCBI Gene LOC110598653 ENTREZGENE
UniProt A0A287CYR1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 CUNH13orf42  chromosome unknown C13orf42 homolog  LOC110598653  uncharacterized LOC110598653  Symbol and/or name change 5135510 APPROVED