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Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Ehlers-Danlos syndrome musculocontractural type 2 | | IAGP | | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Ehlers-Danlos syndrome musculocontractural type 2 | | IAGP | | 7240710 | | OMIM | | |
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1. | GOA_HUMAN data from the GO Consortium |
2. | OMIM Disease Annotation Pipeline |
3. | Pipeline to import KEGG annotations from KEGG into RGD |
4. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | RGD automated import pipeline for gene-chemical interactions |
6. | RGD automated import pipeline for human HPO-to-gene-to-disease annotations |
PMID:10679095 | PMID:11092984 | PMID:11920522 | PMID:12477932 | PMID:14574404 | PMID:14702039 | PMID:15489334 | PMID:16344560 | PMID:16505484 | PMID:19004833 | PMID:19188366 | PMID:20929582 |
PMID:21480325 | PMID:21873635 | PMID:21988832 | PMID:22350411 | PMID:22366580 | PMID:23441919 | PMID:23704329 | PMID:24324885 | PMID:25130324 | PMID:25186462 | PMID:25703627 | PMID:25798074 |
PMID:26186194 | PMID:26373698 | PMID:26900446 | PMID:28514442 | PMID:29507755 | PMID:29676528 | PMID:29864158 | PMID:29976758 | PMID:29987050 | PMID:31972438 |
DSE (Homo sapiens - human) |
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Dse (Mus musculus - house mouse) |
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Dse (Rattus norvegicus - Norway rat) |
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Dse (Chinchilla lanigera - long-tailed chinchilla) |
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DSE (Pan paniscus - bonobo/pygmy chimpanzee) |
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DSE (Canis lupus familiaris - dog) |
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Dse (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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DSE (Sus scrofa - pig) |
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DSE (Chlorocebus sabaeus - African green monkey) |
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Dse (Heterocephalus glaber - naked mole-rat) |
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A008K19 |
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STS-N35795 |
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RH27490 |
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SHGC-148523 |
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STS-R33137 |
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RH70193 |
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SHGC-34640 |
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D6S1448 |
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SART2_3581 |
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The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | visual system | adipose tissue | appendage | entire extraembryonic component | |
High | |||||||||||||||||
Medium | 428 | 1245 | 155 | 24 | 705 | 17 | 2707 | 237 | 715 | 101 | 586 | 742 | 18 | 1146 | 1567 | 2 | |
Low | 1973 | 1693 | 1556 | 584 | 1176 | 433 | 1613 | 1942 | 2970 | 313 | 861 | 858 | 154 | 58 | 1221 | 2 | |
Below cutoff | 32 | 48 | 15 | 14 | 68 | 14 | 35 | 14 | 42 | 5 | 9 | 10 | 1 | 1 | 1 |
RefSeq Transcripts | NG_033266 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001080976 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001322937 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001322938 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001322939 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001322940 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001322941 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001322943 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001322944 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001374520 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001374521 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_001374522 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NM_013352 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NR_136520 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NR_136521 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NR_136522 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NR_136523 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
NR_136524 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017010795 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017010796 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_017010797 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AF098066 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AK093256 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK095123 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK128607 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK293872 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AK301513 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL050331 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL590542 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AL832471 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AW292369 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AW630671 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC039245 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC043526 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BX095954 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BX110619 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BX404448 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BX489961 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH471051 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DB282412 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DC333659 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
HY012067 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
HY050986 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
Z84488 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENST00000331677 ⟹ ENSP00000332151 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000359564 ⟹ ENSP00000352567 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000430252 ⟹ ENSP00000397597 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000448740 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000449314 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000452085 ⟹ ENSP00000404049 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000453463 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000606265 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000606712 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000607094 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000642434 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000643175 ⟹ ENSP00000495885 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000644252 ⟹ ENSP00000494147 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000645959 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000645988 ⟹ ENSP00000494202 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000646710 ⟹ ENSP00000495970 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000647046 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000647244 ⟹ ENSP00000495184 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001080976 ⟹ NP_001074445 | ||||||||||||||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001322937 ⟹ NP_001309866 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001322938 ⟹ NP_001309867 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001322939 ⟹ NP_001309868 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001322940 ⟹ NP_001309869 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001322941 ⟹ NP_001309870 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001322943 ⟹ NP_001309872 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001322944 ⟹ NP_001309873 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001374520 ⟹ NP_001361449 | ||||||||
RefSeq Status: | REVIEWED | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001374521 ⟹ NP_001361450 | ||||||||
RefSeq Status: | REVIEWED | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001374522 ⟹ NP_001361451 | ||||||||
RefSeq Status: | REVIEWED | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_013352 ⟹ NP_037484 | ||||||||||||||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_136520 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_136521 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_136522 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_136523 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_136524 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017010795 ⟹ XP_016866284 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017010796 ⟹ XP_016866285 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_017010797 ⟹ XP_016866286 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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Sequence: |
Protein RefSeqs | NP_001074445 | (Get FASTA) | NCBI Sequence Viewer |
NP_001309866 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001309867 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001309868 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001309869 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001309870 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001309872 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001309873 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001361449 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001361450 | (Get FASTA) | NCBI Sequence Viewer | |
NP_001361451 | (Get FASTA) | NCBI Sequence Viewer | |
NP_037484 | (Get FASTA) | NCBI Sequence Viewer | |
XP_016866284 | (Get FASTA) | NCBI Sequence Viewer | |
XP_016866285 | (Get FASTA) | NCBI Sequence Viewer | |
XP_016866286 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAF00087 | (Get FASTA) | NCBI Sequence Viewer |
AAH39245 | (Get FASTA) | NCBI Sequence Viewer | |
BAG54699 | (Get FASTA) | NCBI Sequence Viewer | |
BAH11619 | (Get FASTA) | NCBI Sequence Viewer | |
BAH13501 | (Get FASTA) | NCBI Sequence Viewer | |
EAW48229 | (Get FASTA) | NCBI Sequence Viewer | |
EAW48230 | (Get FASTA) | NCBI Sequence Viewer | |
Q9UL01 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001074445 ⟸ NM_001080976 |
- Peptide Label: | isoform a precursor |
- UniProtKB: | Q9UL01 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_037484 ⟸ NM_013352 |
- Peptide Label: | isoform a precursor |
- UniProtKB: | Q9UL01 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001309866 ⟸ NM_001322937 |
- Peptide Label: | isoform a precursor |
- UniProtKB: | Q9UL01 (UniProtKB/Swiss-Prot), B7Z1T3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001309869 ⟸ NM_001322940 |
- Peptide Label: | isoform c |
- UniProtKB: | Q9UL01 (UniProtKB/Swiss-Prot), B7Z1T3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001309867 ⟸ NM_001322938 |
- Peptide Label: | isoform a precursor |
- UniProtKB: | Q9UL01 (UniProtKB/Swiss-Prot), B7Z1T3 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001309868 ⟸ NM_001322939 |
- Peptide Label: | isoform b |
- UniProtKB: | Q9UL01 (UniProtKB/Swiss-Prot), B7Z765 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001309873 ⟸ NM_001322944 |
- Peptide Label: | isoform d precursor |
- UniProtKB: | Q9UL01 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001309872 ⟸ NM_001322943 |
- Peptide Label: | isoform e precursor |
- UniProtKB: | Q9UL01 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001309870 ⟸ NM_001322941 |
- Peptide Label: | isoform c |
- UniProtKB: | Q9UL01 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | XP_016866284 ⟸ XM_017010795 |
- Peptide Label: | isoform X1 |
- UniProtKB: | B7Z765 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_016866286 ⟸ XM_017010797 |
- Peptide Label: | isoform X3 |
- Sequence: |
RefSeq Acc Id: | XP_016866285 ⟸ XM_017010796 |
- Peptide Label: | isoform X2 |
- UniProtKB: | Q9UL01 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001361449 ⟸ NM_001374520 |
- Peptide Label: | isoform f |
RefSeq Acc Id: | NP_001361450 ⟸ NM_001374521 |
- Peptide Label: | isoform g |
RefSeq Acc Id: | NP_001361451 ⟸ NM_001374522 |
- Peptide Label: | isoform h precursor |
RefSeq Acc Id: | ENSP00000352567 ⟸ ENST00000359564 |
RefSeq Acc Id: | ENSP00000332151 ⟸ ENST00000331677 |
RefSeq Acc Id: | ENSP00000404049 ⟸ ENST00000452085 |
RefSeq Acc Id: | ENSP00000397597 ⟸ ENST00000430252 |
RefSeq Acc Id: | ENSP00000495885 ⟸ ENST00000643175 |
RefSeq Acc Id: | ENSP00000494147 ⟸ ENST00000644252 |
RefSeq Acc Id: | ENSP00000494202 ⟸ ENST00000645988 |
RefSeq Acc Id: | ENSP00000495970 ⟸ ENST00000646710 |
RefSeq Acc Id: | ENSP00000495184 ⟸ ENST00000647244 |
RGD ID: | 7208949 | ||||||||
Promoter ID: | EPDNEW_H10220 | ||||||||
Type: | initiation region | ||||||||
Name: | DSE_2 | ||||||||
Description: | dermatan sulfate epimerase | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H10221 EPDNEW_H10223 EPDNEW_H10224 EPDNEW_H10222 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 7208951 | ||||||||
Promoter ID: | EPDNEW_H10221 | ||||||||
Type: | initiation region | ||||||||
Name: | DSE_1 | ||||||||
Description: | dermatan sulfate epimerase | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H10220 EPDNEW_H10223 EPDNEW_H10224 EPDNEW_H10222 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 7208959 | ||||||||
Promoter ID: | EPDNEW_H10222 | ||||||||
Type: | initiation region | ||||||||
Name: | DSE_4 | ||||||||
Description: | dermatan sulfate epimerase | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H10220 EPDNEW_H10221 EPDNEW_H10223 EPDNEW_H10224 | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
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RGD ID: | 7208953 | ||||||||
Promoter ID: | EPDNEW_H10223 | ||||||||
Type: | initiation region | ||||||||
Name: | DSE_5 | ||||||||
Description: | dermatan sulfate epimerase | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H10220 EPDNEW_H10221 EPDNEW_H10224 EPDNEW_H10222 | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
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RGD ID: | 7208955 | ||||||||
Promoter ID: | EPDNEW_H10224 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | DSE_3 | ||||||||
Description: | dermatan sulfate epimerase | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H10220 EPDNEW_H10221 EPDNEW_H10223 EPDNEW_H10222 | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
|
RGD ID: | 6803770 | ||||||||
Promoter ID: | HG_KWN:54762 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, K562 | ||||||||
Transcripts: | NM_001080976, OTTHUMT00000041941, OTTHUMT00000041943, UC003PWQ.1, UC003PWR.2 | ||||||||
Position: |
|
RGD ID: | 6803951 | ||||||||
Promoter ID: | HG_KWN:54763 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | CD4+TCell, K562, Lymphoblastoid | ||||||||
Transcripts: | ENST00000331677, NM_013352 | ||||||||
Position: |
|
Name | Type | Condition(s) | Position(s) | Clinical significance |
NM_013352.4(DSE):c.2842T>C (p.Trp948Arg) | single nucleotide variant | not provided [RCV000521617] | Chr6:116437310 [GRCh38] Chr6:116758473 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.1568G>A (p.Gly523Glu) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000723332] | Chr6:116436036 [GRCh38] Chr6:116757199 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.803C>T (p.Ser268Leu) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000074436] | Chr6:116431086 [GRCh38] Chr6:116752249 [GRCh37] Chr6:6q22.1 |
pathogenic |
GRCh38/hg38 6q21-23.2(chr6:108944899-132067720)x1 | copy number loss | See cases [RCV000051196] | Chr6:108944899..132067720 [GRCh38] Chr6:109266102..132388860 [GRCh37] Chr6:109372795..132430553 [NCBI36] Chr6:6q21-23.2 |
pathogenic |
GRCh38/hg38 6q22.1(chr6:115220054-117196371)x1 | copy number loss | See cases [RCV000052195] | Chr6:115220054..117196371 [GRCh38] Chr6:115541218..117517534 [GRCh37] Chr6:115647911..117624227 [NCBI36] Chr6:6q22.1 |
pathogenic |
GRCh38/hg38 6q22.1-22.33(chr6:115601230-128514324)x1 | copy number loss | See cases [RCV000052196] | Chr6:115601230..128514324 [GRCh38] Chr6:115922394..128835469 [GRCh37] Chr6:116029087..128877162 [NCBI36] Chr6:6q22.1-22.33 |
pathogenic |
GRCh38/hg38 6q22.1(chr6:115890731-116427566)x3 | copy number gain | See cases [RCV000053368] | Chr6:115890731..116427566 [GRCh38] Chr6:116211895..116748729 [GRCh37] Chr6:116318588..116855422 [NCBI36] Chr6:6q22.1 |
uncertain significance |
NM_001080976.1(DSE):c.1460C>T (p.Ser487Phe) | single nucleotide variant | Malignant melanoma [RCV000067082] | Chr6:116435928 [GRCh38] Chr6:116757091 [GRCh37] Chr6:116863784 [NCBI36] Chr6:6q22.1 |
not provided |
GRCh38/hg38 6q22.1-22.2(chr6:115326962-117935240)x1 | copy number loss | See cases [RCV000135623] | Chr6:115326962..117935240 [GRCh38] Chr6:115648126..118256403 [GRCh37] Chr6:115754819..118363096 [NCBI36] Chr6:6q22.1-22.2 |
likely pathogenic |
GRCh38/hg38 6q13-24.1(chr6:74382807-142040500)x3 | copy number gain | See cases [RCV000139729] | Chr6:74382807..142040500 [GRCh38] Chr6:75092523..142361637 [GRCh37] Chr6:75149243..142403330 [NCBI36] Chr6:6q13-24.1 |
pathogenic |
GRCh38/hg38 6q16.1-22.31(chr6:96609994-122161548)x1 | copy number loss | See cases [RCV000139465] | Chr6:96609994..122161548 [GRCh38] Chr6:97057870..122482694 [GRCh37] Chr6:97164591..122524393 [NCBI36] Chr6:6q16.1-22.31 |
pathogenic |
GRCh38/hg38 6q21-22.31(chr6:106503719-125781219)x1 | copy number loss | See cases [RCV000141587] | Chr6:106503719..125781219 [GRCh38] Chr6:106951594..126102365 [GRCh37] Chr6:107058287..126144058 [NCBI36] Chr6:6q21-22.31 |
pathogenic |
GRCh38/hg38 6q16.3-22.31(chr6:100054889-120488154)x1 | copy number loss | See cases [RCV000143227] | Chr6:100054889..120488154 [GRCh38] Chr6:100502765..120809300 [GRCh37] Chr6:100609486..120850999 [NCBI36] Chr6:6q16.3-22.31 |
pathogenic |
NC_000006.11:g.(112511751_112511752)_(118037595_118037596)del | deletion | Dysmorphic features [RCV000157073] | Chr6:112511752..118037595 [GRCh37] Chr6:6q21-22.1 |
pathogenic |
NC_000006.11:g.(116681080_116735056)_(119687719_119775014)del | deletion | Delayed speech and language development [RCV000157076] | Chr6:116735056..119687719 [GRCh37] Chr6:6q22.1-22.31 |
pathogenic |
NM_013352.4(DSE):c.1897G>A (p.Val633Met) | single nucleotide variant | not provided [RCV000522074] | Chr6:116436365 [GRCh38] Chr6:116757528 [GRCh37] Chr6:6q22.1 |
likely benign|conflicting interpretations of pathogenicity|uncertain significance |
GRCh37/hg19 6q21-22.1(chr6:114318401-116957002)x3 | copy number gain | not provided [RCV000487884] | Chr6:114318401..116957002 [GRCh37] Chr6:6q21-22.1 |
uncertain significance |
NM_013352.4(DSE):c.2168G>A (p.Arg723Gln) | single nucleotide variant | not provided [RCV000520971] | Chr6:116436636 [GRCh38] Chr6:116757799 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.2083G>A (p.Ala695Thr) | single nucleotide variant | not provided [RCV000520023] | Chr6:116436551 [GRCh38] Chr6:116757714 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.1926= (p.Asn642=) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000526647] | Chr6:116436394 [GRCh38] Chr6:116757557 [GRCh37] Chr6:6q22.1 |
benign |
NM_013352.4(DSE):c.1428G>A (p.Lys476=) | single nucleotide variant | not specified [RCV000606268] | Chr6:116435896 [GRCh38] Chr6:116757059 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.450G>A (p.Pro150=) | single nucleotide variant | not specified [RCV000601499] | Chr6:116426607 [GRCh38] Chr6:116747770 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.74_75delinsTT (p.Thr25Ile) | indel | not specified [RCV000605657] | Chr6:116399324..116399325 [GRCh38] Chr6:116720487..116720488 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.2619_2621del (p.Gly874del) | deletion | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000539080]|not specified [RCV000603318] | Chr6:116437085..116437087 [GRCh38] Chr6:116758248..116758250 [GRCh37] Chr6:6q22.1 |
benign |
NM_013352.4(DSE):c.844A>G (p.Ile282Val) | single nucleotide variant | not specified [RCV000441451] | Chr6:116431127 [GRCh38] Chr6:116752290 [GRCh37] Chr6:6q22.1 |
benign |
NM_013352.4(DSE):c.2661A>G (p.Thr887=) | single nucleotide variant | not specified [RCV000424133] | Chr6:116437129 [GRCh38] Chr6:116758292 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.711G>C (p.Leu237=) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000960492]|not provided [RCV001172175]|not specified [RCV000442323] | Chr6:116430994 [GRCh38] Chr6:116752157 [GRCh37] Chr6:6q22.1 |
benign|likely benign |
NM_013352.4(DSE):c.910+20G>A | single nucleotide variant | not specified [RCV000419161] | Chr6:116431213 [GRCh38] Chr6:116752376 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.2547C>T (p.Pro849=) | single nucleotide variant | not specified [RCV000442892] | Chr6:116437015 [GRCh38] Chr6:116758178 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.74C>T (p.Thr25Ile) | single nucleotide variant | not specified [RCV000419462] | Chr6:116399324 [GRCh38] Chr6:116720487 [GRCh37] Chr6:6q22.1 |
benign |
NM_013352.4(DSE):c.101C>T (p.Pro34Leu) | single nucleotide variant | not specified [RCV000425605] | Chr6:116399351 [GRCh38] Chr6:116720514 [GRCh37] Chr6:6q22.1 |
benign |
NM_013352.4(DSE):c.495G>T (p.Leu165Phe) | single nucleotide variant | not provided [RCV000425933] | Chr6:116426652 [GRCh38] Chr6:116747815 [GRCh37] Chr6:6q22.1 |
uncertain significance |
GRCh37/hg19 6q14.3-22.31(chr6:85988428-120548687)x1 | copy number loss | See cases [RCV000445666] | Chr6:85988428..120548687 [GRCh37] Chr6:6q14.3-22.31 |
pathogenic |
NM_013352.4(DSE):c.53G>T (p.Cys18Phe) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000946968]|not specified [RCV000426170] | Chr6:116399303 [GRCh38] Chr6:116720466 [GRCh37] Chr6:6q22.1 |
benign |
NM_013352.4(DSE):c.1004G>A (p.Arg335His) | single nucleotide variant | not provided [RCV000436673] | Chr6:116433436 [GRCh38] Chr6:116754599 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.1142T>C (p.Val381Ala) | single nucleotide variant | not specified [RCV000426390] | Chr6:116435610 [GRCh38] Chr6:116756773 [GRCh37] Chr6:6q22.1 |
benign |
NM_013352.4(DSE):c.359T>C (p.Ile120Thr) | single nucleotide variant | not specified [RCV000443982] | Chr6:116399609 [GRCh38] Chr6:116720772 [GRCh37] Chr6:6q22.1 |
uncertain significance |
GRCh37/hg19 6q21-q22(chr6:112069445-120994664)x1 | copy number loss | 6q21-6q22.1 deletion [RCV000416567] | Chr6:112069445..120994664 [GRCh37] Chr6:6q21-22.31 |
likely pathogenic |
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 | copy number gain | See cases [RCV000512067] | Chr6:156975..170919482 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) | copy number gain | See cases [RCV000510595] | Chr6:156975..170919482 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
NM_013352.4(DSE):c.1118+15G>A | single nucleotide variant | not specified [RCV000602992] | Chr6:116433565 [GRCh38] Chr6:116754728 [GRCh37] Chr6:6q22.1 |
benign |
NM_013352.4(DSE):c.799A>G (p.Arg267Gly) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000515451] | Chr6:116431082 [GRCh38] Chr6:116752245 [GRCh37] Chr6:6q22.1 |
pathogenic |
NM_013352.4(DSE):c.516A>G (p.Thr172=) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000912322]|not specified [RCV000601617] | Chr6:116426673 [GRCh38] Chr6:116747836 [GRCh37] Chr6:6q22.1 |
likely benign |
GRCh37/hg19 6q21-23.2(chr6:112939290-132327952)x1 | copy number loss | PARP Inhibitor response [RCV000626432] | Chr6:112939290..132327952 [GRCh37] Chr6:6q21-23.2 |
drug response |
NM_013352.4(DSE):c.483T>G (p.Ala161=) | single nucleotide variant | not specified [RCV000609405] | Chr6:116426640 [GRCh38] Chr6:116747803 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.1752G>C (p.Ala584=) | single nucleotide variant | not specified [RCV000612130] | Chr6:116436220 [GRCh38] Chr6:116757383 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.209G>A (p.Arg70His) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000957867]|not specified [RCV000600185] | Chr6:116399459 [GRCh38] Chr6:116720622 [GRCh37] Chr6:6q22.1 |
benign |
NM_013352.4(DSE):c.1271G>A (p.Gly424Glu) | single nucleotide variant | Inborn genetic diseases [RCV000624169] | Chr6:116435739 [GRCh38] Chr6:116756902 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.2001A>G (p.Pro667=) | single nucleotide variant | not specified [RCV000612523] | Chr6:116436469 [GRCh38] Chr6:116757632 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.2005A>G (p.Ile669Val) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000651850] | Chr6:116436473 [GRCh38] Chr6:116757636 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.-59G>T | single nucleotide variant | not specified [RCV000601901] | Chr6:116371116 [GRCh38] Chr6:116692279 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.416+13C>T | single nucleotide variant | not specified [RCV000607355] | Chr6:116399679 [GRCh38] Chr6:116720842 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.2428C>G (p.Arg810Gly) | single nucleotide variant | not specified [RCV000602303] | Chr6:116436896 [GRCh38] Chr6:116758059 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.114C>T (p.Ala38=) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000973393]|not specified [RCV000607855] | Chr6:116399364 [GRCh38] Chr6:116720527 [GRCh37] Chr6:6q22.1 |
benign|likely benign |
NM_013352.4(DSE):c.240C>T (p.Ser80=) | single nucleotide variant | not specified [RCV000610571] | Chr6:116399490 [GRCh38] Chr6:116720653 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.1221T>A (p.Pro407=) | single nucleotide variant | not provided [RCV000931372]|not specified [RCV000613605] | Chr6:116435689 [GRCh38] Chr6:116756852 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.1827G>A (p.Gln609=) | single nucleotide variant | not specified [RCV000608325] | Chr6:116436295 [GRCh38] Chr6:116757458 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.2601C>T (p.Tyr867=) | single nucleotide variant | not provided [RCV000908391]|not specified [RCV000608370] | Chr6:116437069 [GRCh38] Chr6:116758232 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.2727T>C (p.Ile909=) | single nucleotide variant | not specified [RCV000611675] | Chr6:116437195 [GRCh38] Chr6:116758358 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.911-15A>G | single nucleotide variant | not specified [RCV000614644] | Chr6:116433328 [GRCh38] Chr6:116754491 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.136C>T (p.Leu46=) | single nucleotide variant | not specified [RCV000614868] | Chr6:116399386 [GRCh38] Chr6:116720549 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.1841A>G (p.Tyr614Cys) | single nucleotide variant | not provided [RCV000512750] | Chr6:116436309 [GRCh38] Chr6:116757472 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.1499G>A (p.Gly500Asp) | single nucleotide variant | Inborn genetic diseases [RCV000622470] | Chr6:116435967 [GRCh38] Chr6:116757130 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.1613G>A (p.Arg538Gln) | single nucleotide variant | not provided [RCV000513294] | Chr6:116436081 [GRCh38] Chr6:116757244 [GRCh37] Chr6:6q22.1 |
uncertain significance |
GRCh37/hg19 6q16.1-22.1(chr6:95549951-116684929)x1 | copy number loss | not provided [RCV000682693] | Chr6:95549951..116684929 [GRCh37] Chr6:6q16.1-22.1 |
pathogenic |
GRCh37/hg19 6q21-22.1(chr6:113261042-117842826)x1 | copy number loss | not provided [RCV000682711] | Chr6:113261042..117842826 [GRCh37] Chr6:6q21-22.1 |
pathogenic |
GRCh37/hg19 6q22.1(chr6:116656963-116903944)x3 | copy number gain | not provided [RCV000682713] | Chr6:116656963..116903944 [GRCh37] Chr6:6q22.1 |
uncertain significance |
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 | copy number gain | not provided [RCV000745403] | Chr6:108666..170980171 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 | copy number gain | not provided [RCV000745400] | Chr6:60107..171054786 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 | copy number gain | not provided [RCV000745404] | Chr6:165632..170919470 [GRCh37] Chr6:6p25.3-q27 |
pathogenic |
GRCh37/hg19 6q22.1(chr6:116601285-117057982)x3 | copy number gain | not provided [RCV000745999] | Chr6:116601285..117057982 [GRCh37] Chr6:6q22.1 |
benign |
NM_013352.4(DSE):c.730C>T (p.Leu244=) | single nucleotide variant | not provided [RCV000977559] | Chr6:116431013 [GRCh38] Chr6:116752176 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.35T>A (p.Phe12Tyr) | single nucleotide variant | not provided [RCV000762432] | Chr6:116399285 [GRCh38] Chr6:116720448 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.1927G>A (p.Gly643Arg) | single nucleotide variant | not provided [RCV000762433] | Chr6:116436395 [GRCh38] Chr6:116757558 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.885A>C (p.Ala295=) | single nucleotide variant | not provided [RCV000919858] | Chr6:116431168 [GRCh38] Chr6:116752331 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.2058C>T (p.Phe686=) | single nucleotide variant | not provided [RCV000903898] | Chr6:116436526 [GRCh38] Chr6:116757689 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.753G>A (p.Thr251=) | single nucleotide variant | not provided [RCV000904651] | Chr6:116431036 [GRCh38] Chr6:116752199 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_003309.4(TSPYL1):c.1269G>A (p.Arg423=) | single nucleotide variant | not provided [RCV000922417] | Chr6:116278562 [GRCh38] Chr6:116599725 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.2635C>G (p.Arg879Gly) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV001057996] | Chr6:116437103 [GRCh38] Chr6:116758266 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.2651G>A (p.Arg884Gln) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV001078769]|not provided [RCV000827035] | Chr6:116437119 [GRCh38] Chr6:116758282 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.1961G>A (p.Arg654Gln) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000914958] | Chr6:116436429 [GRCh38] Chr6:116757592 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.2334G>T (p.Leu778=) | single nucleotide variant | not provided [RCV000841720] | Chr6:116436802 [GRCh38] Chr6:116757965 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.2370T>C (p.Ile790=) | single nucleotide variant | not provided [RCV000840191] | Chr6:116436838 [GRCh38] Chr6:116758001 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.-53-232T>A | single nucleotide variant | not provided [RCV000843633] | Chr6:116398966 [GRCh38] Chr6:116720129 [GRCh37] Chr6:6q22.1 |
benign |
NM_003309.4(TSPYL1):c.723_724TG[1] (p.Val242fs) | microsatellite | Sudden infant death with dysgenesis of the testes syndrome [RCV000993688] | Chr6:116279105..116279106 [GRCh38] Chr6:116600268..116600269 [GRCh37] Chr6:6q22.1 |
pathogenic|likely pathogenic |
NM_013352.4(DSE):c.355A>C (p.Asn119His) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000796415] | Chr6:116399605 [GRCh38] Chr6:116720768 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.216G>A (p.Thr72=) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV001087018]|not provided [RCV000827034] | Chr6:116399466 [GRCh38] Chr6:116720629 [GRCh37] Chr6:6q22.1 |
benign|likely benign |
NM_013352.4(DSE):c.1225G>A (p.Glu409Lys) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000809603] | Chr6:116435693 [GRCh38] Chr6:116756856 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.-53-4G>A | single nucleotide variant | not provided [RCV000828043] | Chr6:116399194 [GRCh38] Chr6:116720357 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.417-15T>G | single nucleotide variant | not provided [RCV000841341] | Chr6:116426559 [GRCh38] Chr6:116747722 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.2082C>T (p.Tyr694=) | single nucleotide variant | not provided [RCV000827289] | Chr6:116436550 [GRCh38] Chr6:116757713 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.911-50G>T | single nucleotide variant | not provided [RCV000837687] | Chr6:116433293 [GRCh38] Chr6:116754456 [GRCh37] Chr6:6q22.1 |
benign |
NM_003309.4(TSPYL1):c.354C>T (p.Asp118=) | single nucleotide variant | not provided [RCV000920000] | Chr6:116279477 [GRCh38] Chr6:116600640 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.693A>G (p.Leu231=) | single nucleotide variant | not provided [RCV000941120] | Chr6:116430976 [GRCh38] Chr6:116752139 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.911-229G>A | single nucleotide variant | not provided [RCV000838182] | Chr6:116433114 [GRCh38] Chr6:116754277 [GRCh37] Chr6:6q22.1 |
benign |
NM_013352.4(DSE):c.-53-89A>G | single nucleotide variant | not provided [RCV000838731] | Chr6:116399109 [GRCh38] Chr6:116720272 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.1284T>C (p.Tyr428=) | single nucleotide variant | not provided [RCV000842336] | Chr6:116435752 [GRCh38] Chr6:116756915 [GRCh37] Chr6:6q22.1 |
likely benign |
GRCh37/hg19 6q21-22.31(chr6:110981075-119608396)x1 | copy number loss | not provided [RCV000848701] | Chr6:110981075..119608396 [GRCh37] Chr6:6q21-22.31 |
pathogenic |
NM_013352.4(DSE):c.1381G>A (p.Ala461Thr) | single nucleotide variant | not provided [RCV000929701] | Chr6:116435849 [GRCh38] Chr6:116757012 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.831G>A (p.Gln277=) | single nucleotide variant | not provided [RCV000975395] | Chr6:116431114 [GRCh38] Chr6:116752277 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_003309.4(TSPYL1):c.1135A>G (p.Thr379Ala) | single nucleotide variant | not provided [RCV000952908] | Chr6:116278696 [GRCh38] Chr6:116599859 [GRCh37] Chr6:6q22.1 |
benign |
NM_003309.4(TSPYL1):c.99C>T (p.Tyr33=) | single nucleotide variant | not provided [RCV000974414] | Chr6:116279732 [GRCh38] Chr6:116600895 [GRCh37] Chr6:6q22.1 |
benign |
NM_013352.4(DSE):c.2298C>T (p.Asn766=) | single nucleotide variant | not provided [RCV000917983] | Chr6:116436766 [GRCh38] Chr6:116757929 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_003309.4(TSPYL1):c.256G>A (p.Val86Ile) | single nucleotide variant | not provided [RCV000908171] | Chr6:116279575 [GRCh38] Chr6:116600738 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.2580A>G (p.Leu860=) | single nucleotide variant | not provided [RCV000902505] | Chr6:116437048 [GRCh38] Chr6:116758211 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.78C>T (p.Asp26=) | single nucleotide variant | not provided [RCV000909648] | Chr6:116399328 [GRCh38] Chr6:116720491 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_003309.4(TSPYL1):c.1098C>A (p.Phe366Leu) | single nucleotide variant | not provided [RCV000891397] | Chr6:116278733 [GRCh38] Chr6:116599896 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.120C>T (p.Tyr40=) | single nucleotide variant | not provided [RCV000913771] | Chr6:116399370 [GRCh38] Chr6:116720533 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.2120C>G (p.Ser707Cys) | single nucleotide variant | Ehlers-Danlos syndrome, musculocontractural type 2 [RCV000956406] | Chr6:116436588 [GRCh38] Chr6:116757751 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.558G>T (p.Gly186=) | single nucleotide variant | not provided [RCV000912627] | Chr6:116426715 [GRCh38] Chr6:116747878 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_013352.4(DSE):c.330A>C (p.Ala110=) | single nucleotide variant | not provided [RCV000933725] | Chr6:116399580 [GRCh38] Chr6:116720743 [GRCh37] Chr6:6q22.1 |
likely benign |
NM_003309.4(TSPYL1):c.280A>G (p.Ile94Val) | single nucleotide variant | not provided [RCV000912394] | Chr6:116279551 [GRCh38] Chr6:116600714 [GRCh37] Chr6:6q22.1 |
likely benign |
GRCh37/hg19 6q16.3-22.1(chr6:101296547-117004249)x3 | copy number gain | Microcephaly [RCV001251053] | Chr6:101296547..117004249 [GRCh37] Chr6:6q16.3-22.1 |
pathogenic |
NM_013352.4(DSE):c.29G>A (p.Ser10Asn) | single nucleotide variant | not provided [RCV001172174] | Chr6:116399279 [GRCh38] Chr6:116720442 [GRCh37] Chr6:6q22.1 |
uncertain significance |
NM_013352.4(DSE):c.936G>A (p.Ala312=) | single nucleotide variant | not provided [RCV001200481] | Chr6:116433368 [GRCh38] Chr6:116754531 [GRCh37] Chr6:6q22.1 |
likely benign |
NC_000006.11:g.116734559_123648104del | deletion | Seizures [RCV001256147] | Chr6:116734559..123648104 [GRCh37] Chr6:6q22.1-22.31 |
pathogenic |
NM_013352.4(DSE):c.387del (p.Asp128_Tyr129insTer) | deletion | Inborn genetic diseases [RCV001267004] | Chr6:116399637 [GRCh38] Chr6:116720800 [GRCh37] Chr6:6q22.1 |
pathogenic |
NM_003309.4(TSPYL1):c.236del (p.Gly79fs) | deletion | Sudden infant death with dysgenesis of the testes syndrome [RCV001270429] | Chr6:116279595 [GRCh38] Chr6:116600758 [GRCh37] Chr6:6q22.1 |
likely pathogenic |
Database | Acc Id | Source(s) |
AGR Gene | HGNC:21144 | AgrOrtholog |
COSMIC | DSE | COSMIC |
Ensembl Genes | ENSG00000111817 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Protein | ENSP00000332151 | UniProtKB/Swiss-Prot |
ENSP00000352567 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSP00000397597 | UniProtKB/TrEMBL | |
ENSP00000404049 | ENTREZGENE, UniProtKB/Swiss-Prot | |
ENSP00000494147 | ENTREZGENE, UniProtKB/Swiss-Prot | |
ENSP00000494202 | UniProtKB/TrEMBL | |
ENSP00000495184 | UniProtKB/TrEMBL | |
ENSP00000495885 | UniProtKB/TrEMBL | |
ENSP00000495970 | ENTREZGENE, UniProtKB/TrEMBL | |
Ensembl Transcript | ENST00000331677 | UniProtKB/Swiss-Prot |
ENST00000359564 | ENTREZGENE, UniProtKB/TrEMBL | |
ENST00000430252 | UniProtKB/TrEMBL | |
ENST00000448740 | ENTREZGENE | |
ENST00000449314 | ENTREZGENE | |
ENST00000452085 | ENTREZGENE, UniProtKB/Swiss-Prot | |
ENST00000643175 | UniProtKB/TrEMBL | |
ENST00000644252 | ENTREZGENE, UniProtKB/Swiss-Prot | |
ENST00000645959 | ENTREZGENE | |
ENST00000645988 | UniProtKB/TrEMBL | |
ENST00000646710 | ENTREZGENE, UniProtKB/TrEMBL | |
ENST00000647244 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.50.10.100 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
GTEx | ENSG00000111817 | GTEx |
HGNC ID | HGNC:21144 | ENTREZGENE |
Human Proteome Map | DSE | Human Proteome Map |
InterPro | Chondroitin_lyas | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
HepII_N | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | hsa:29940 | UniProtKB/Swiss-Prot |
NCBI Gene | 29940 | ENTREZGENE |
OMIM | 605942 | OMIM |
615539 | OMIM | |
Pfam | DUF4962 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PharmGKB | PA162384080 | PharmGKB |
Superfamily-SCOP | SSF48230 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniGene | Hs.458358 | ENTREZGENE |
Hs.547713 | ENTREZGENE | |
UniProt | A0A2R8Y4N7_HUMAN | UniProtKB/TrEMBL |
A0A2R8Y6Y4_HUMAN | UniProtKB/TrEMBL | |
A0A2R8YE23_HUMAN | UniProtKB/TrEMBL | |
A0A2U3TZJ0_HUMAN | UniProtKB/TrEMBL | |
B7Z1T3 | ENTREZGENE, UniProtKB/TrEMBL | |
B7Z765 | ENTREZGENE, UniProtKB/TrEMBL | |
DSE_HUMAN | UniProtKB/Swiss-Prot, ENTREZGENE | |
X6REM1_HUMAN | UniProtKB/TrEMBL | |
UniProt Secondary | Q5R3K6 | UniProtKB/Swiss-Prot |