Rhbdf1 (rhomboid 5 homolog 1) - Rat Genome Database

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Gene: Rhbdf1 (rhomboid 5 homolog 1) Mus musculus
Analyze
Symbol: Rhbdf1
Name: rhomboid 5 homolog 1
RGD ID: 1312891
MGI Page MGI
Description: Predicted to enable serine-type endopeptidase activity. Predicted to be involved in several processes, including negative regulation of protein secretion; regulation of epidermal growth factor receptor signaling pathway; and regulation of proteasomal protein catabolic process. Predicted to be located in Golgi membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including alimentary system; brain; early conceptus; eye; and genitourinary system. Orthologous to human RHBDF1 (rhomboid 5 homolog 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C16ORF8; Di; Dis; Dist; Dist1; Egfr; Egfr-rs; epidermal growth factor receptor related sequence; epidermal growth factor receptor-related protein; inactive rhomboid protein 1; iRhom1; KIAA4242; mKIAA4242; rhomboid family 1; rhomboid family member 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,159,585 - 32,172,339 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,159,585 - 32,172,300 (-)EnsemblGRCm39 Ensembl
GRCm381132,209,585 - 32,222,331 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,209,585 - 32,222,300 (-)EnsemblGRCm38mm10GRCm38
MGSCv371132,109,585 - 32,122,293 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361132,109,585 - 32,122,238 (-)NCBIMGSCv36mm8
Celera1134,626,680 - 34,639,569 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.83NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
diethylstilbestrol  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
estrone  (ISO)
ethanol  (EXP)
fenthion  (EXP)
fenvalerate  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
indometacin  (ISO)
mestranol  (ISO)
methamphetamine  (ISO)
methidathion  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
ozone  (EXP)
paracetamol  (ISO)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
SCH 23390  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
thioacetamide  (ISO)
trichostatin A  (ISO)
trovafloxacin  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal cardiac thrombosis  (IAGP)
abnormal heart morphology  (IAGP)
abnormal pancreatic acinus morphology  (IAGP)
absent pancreatic acinar cell zymogen granule  (IAGP)
anemia  (IAGP)
anisopoikilocytosis  (IAGP)
ataxia  (IAGP)
decreased body weight  (IAGP)
decreased bone marrow cell number  (IAGP)
decreased bone mineral density  (IEA)
decreased embryo size  (IAGP)
decreased hemoglobin content  (IAGP)
decreased mean corpuscular hemoglobin  (IAGP)
decreased mean corpuscular volume  (IAGP)
decreased white adipose tissue amount  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
enlarged aortic valve  (IAGP)
enlarged pulmonary valve  (IAGP)
enlarged tricuspid valve  (IAGP)
eyelids open at birth  (IAGP)
failure of eyelid fusion  (IAGP)
impaired coordination  (IAGP)
increased eating frequency  (IAGP)
increased grip strength  (IEA)
increased width of hypertrophic chondrocyte zone  (IAGP)
intracerebral hemorrhage  (IAGP)
microcytosis  (IAGP)
neonatal lethality, incomplete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
pallor  (IAGP)
pancreatic acinar hypoplasia  (IAGP)
perinatal lethality  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
preweaning lethality, incomplete penetrance  (IEA)
reticulocytosis  (IAGP)
slow postnatal weight gain  (IAGP)
small spleen  (IAGP)
small thymus  (IAGP)
thick aortic valve cusps  (IAGP)
thick pulmonary valve cusps  (IAGP)
thick tricuspid valve cusps  (IAGP)
waved hair  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7589805   PMID:8318735   PMID:8838797   PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11092979   PMID:11217851   PMID:11544199   PMID:12466851  
PMID:12477932   PMID:12819125   PMID:14610273   PMID:14691545   PMID:15782199   PMID:15965977   PMID:16141072   PMID:16141073   PMID:17218265   PMID:17967808   PMID:18799693   PMID:19449303  
PMID:21267068   PMID:21677750   PMID:21873635   PMID:22056776   PMID:23969955   PMID:24078251   PMID:24194600   PMID:25918388   PMID:28104813   PMID:28432785   PMID:29654741   PMID:32060096  
PMID:32646486   PMID:33227998   PMID:34613632   PMID:34672089   PMID:37282854  


Genomics

Comparative Map Data
Rhbdf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,159,585 - 32,172,339 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,159,585 - 32,172,300 (-)EnsemblGRCm39 Ensembl
GRCm381132,209,585 - 32,222,331 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,209,585 - 32,222,300 (-)EnsemblGRCm38mm10GRCm38
MGSCv371132,109,585 - 32,122,293 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361132,109,585 - 32,122,238 (-)NCBIMGSCv36mm8
Celera1134,626,680 - 34,639,569 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.83NCBI
RHBDF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381658,059 - 76,360 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1658,059 - 76,355 (-)EnsemblGRCh38hg38GRCh38
GRCh3716108,058 - 122,629 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361648,058 - 62,591 (-)NCBINCBI36Build 36hg18NCBI36
Build 341648,058 - 62,591NCBI
Celera16309,954 - 324,535 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef1626,451 - 41,032 (-)NCBIHuRef
CHM1_116107,996 - 122,575 (-)NCBICHM1_1
T2T-CHM13v2.01651,596 - 69,903 (-)NCBIT2T-CHM13v2.0
Rhbdf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,911,282 - 15,924,214 (+)NCBIGRCr8
mRatBN7.21015,406,832 - 15,419,765 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,406,859 - 15,419,763 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1020,152,893 - 20,165,784 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,641,781 - 19,654,677 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01015,134,664 - 15,147,558 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01015,672,370 - 15,685,285 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,672,382 - 15,685,284 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,567,515 - 15,580,428 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,653,948 - 15,666,851 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,661,089 - 15,667,673 (+)NCBI
Celera1015,074,361 - 15,087,252 (+)NCBICelera
Cytogenetic Map10q12NCBI
Rhbdf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544217,078,864 - 17,098,999 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544217,090,962 - 17,098,068 (+)NCBIChiLan1.0ChiLan1.0
RHBDF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218273,273 - 291,700 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,065,373 - 4,083,718 (-)NCBINHGRI_mPanPan1
PanPan1.11649,031 - 57,211 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1649,031 - 57,222 (-)Ensemblpanpan1.1panPan2
RHBDF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,394,654 - 40,413,619 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl640,395,517 - 40,413,606 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,652,775 - 41,676,636 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,732,787 - 40,756,647 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,739,139 - 40,756,645 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1640,420,352 - 40,444,203 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,381,279 - 40,405,130 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,860,455 - 40,884,315 (+)NCBIUU_Cfam_GSD_1.0
Rhbdf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,705,206 - 112,712,074 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501803,005 - 813,367 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501802,728 - 810,375 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RHBDF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,560,915 - 41,567,593 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,548,440 - 41,567,596 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,869,445 - 40,888,436 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RHBDF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1514,935 - 34,991 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl513,071 - 21,883 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606831,194,498 - 31,209,982 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rhbdf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624913937,484 - 954,428 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624913937,484 - 954,458 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rhbdf1
560 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2482
Count of miRNA genes:778
Interacting mature miRNAs:1022
Transcripts:ENSMUST00000020524, ENSMUST00000132578, ENSMUST00000137125, ENSMUST00000142274, ENSMUST00000143036, ENSMUST00000143988, ENSMUST00000144902, ENSMUST00000146179, ENSMUST00000150381
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
25394552Skmw69_mskeletal muscle weight 69, TA (mouse)112969902932329535Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
25394550Skmw71_mskeletal muscle weight 71, gastroc (mouse)113127543232745567Mouse
25394551Skmw70_mskeletal muscle weight 70, EDL (mouse)113132273732594975Mouse
25394558Skmw72_mskeletal muscle weight 72, soleus (mouse)113132943032785551Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse

Markers in Region
Rhbdf1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A4UniSTS
cM Map1116.0UniSTS
REN94523  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381132,210,452 - 32,210,697UniSTSGRCm38
MGSCv371132,110,452 - 32,110,697UniSTSGRCm37
Celera1134,627,547 - 34,627,791UniSTS
Cytogenetic Map11A4UniSTS
cM Map1116.0UniSTS
Egfr-rs  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A4UniSTS
Cytogenetic Map12F1UniSTS
cM Map1116.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001291818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011243658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_872202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI842763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW491627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY016021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY270878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY733688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY766909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD554689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN664154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M99623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020524   ⟹   ENSMUSP00000020524
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,159,585 - 32,172,300 (-)Ensembl
GRCm38.p6 Ensembl1132,209,585 - 32,222,300 (-)Ensembl
RefSeq Acc Id: ENSMUST00000132578   ⟹   ENSMUSP00000120543
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,164,286 - 32,172,280 (-)Ensembl
GRCm38.p6 Ensembl1132,214,286 - 32,222,280 (-)Ensembl
RefSeq Acc Id: ENSMUST00000137125
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,160,399 - 32,161,270 (-)Ensembl
GRCm38.p6 Ensembl1132,210,399 - 32,211,270 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,159,950 - 32,160,900 (-)Ensembl
GRCm38.p6 Ensembl1132,209,950 - 32,210,900 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143036
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,159,586 - 32,167,317 (-)Ensembl
GRCm38.p6 Ensembl1132,209,586 - 32,217,317 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143988   ⟹   ENSMUSP00000117471
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,159,804 - 32,161,139 (-)Ensembl
GRCm38.p6 Ensembl1132,209,804 - 32,211,139 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144902   ⟹   ENSMUSP00000122533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,166,009 - 32,172,259 (-)Ensembl
GRCm38.p6 Ensembl1132,216,009 - 32,222,259 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146179   ⟹   ENSMUSP00000118985
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,159,587 - 32,172,280 (-)Ensembl
GRCm38.p6 Ensembl1132,209,587 - 32,222,280 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150381   ⟹   ENSMUSP00000118769
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1132,165,068 - 32,172,244 (-)Ensembl
GRCm38.p6 Ensembl1132,215,068 - 32,222,244 (-)Ensembl
RefSeq Acc Id: NM_001291818   ⟹   NP_001278747
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,172,293 (-)NCBI
GRCm381132,209,585 - 32,222,293 (-)NCBI
Celera1134,626,680 - 34,639,569 (-)NCBI
Sequence:
RefSeq Acc Id: NM_010117   ⟹   NP_034247
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,172,293 (-)NCBI
GRCm381132,209,585 - 32,222,293 (-)NCBI
MGSCv371132,109,585 - 32,122,293 (-)RGD
Celera1134,626,680 - 34,639,569 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514494   ⟹   XP_006514557
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,172,339 (-)NCBI
GRCm381132,209,585 - 32,222,331 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006514495   ⟹   XP_006514558
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,172,328 (-)NCBI
GRCm381132,209,585 - 32,222,331 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006514496   ⟹   XP_006514559
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,171,148 (-)NCBI
GRCm381132,209,585 - 32,221,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006514499   ⟹   XP_006514562
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,172,339 (-)NCBI
GRCm381132,209,585 - 32,222,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006514501   ⟹   XP_006514564
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,172,327 (-)NCBI
GRCm381132,209,585 - 32,222,330 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006514503   ⟹   XP_006514566
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,165,123 (-)NCBI
GRCm381132,209,585 - 32,215,123 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243658   ⟹   XP_011241960
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,166,303 (-)NCBI
GRCm381132,209,585 - 32,216,303 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245523   ⟹   XP_030101383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,172,326 (-)NCBI
GRCm381132,209,585 - 32,222,329 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245524   ⟹   XP_030101384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,172,325 (-)NCBI
GRCm381132,209,585 - 32,222,328 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245525   ⟹   XP_030101385
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,171,088 (-)NCBI
GRCm381132,209,585 - 32,221,089 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030245526   ⟹   XP_030101386
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,172,324 (-)NCBI
GRCm381132,209,585 - 32,222,328 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156289   ⟹   XP_036012182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,171,094 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001779873
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,166,304 (-)NCBI
GRCm381132,209,585 - 32,216,304 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936734
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,166,303 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004936735
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,172,339 (-)NCBI
Sequence:
RefSeq Acc Id: XR_872202
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391132,159,585 - 32,166,303 (-)NCBI
GRCm381132,209,585 - 32,216,304 (-)NCBI
Sequence:
RefSeq Acc Id: NP_034247   ⟸   NM_010117
- Peptide Label: isoform 1
- UniProtKB: Q6PJ49 (UniProtKB/Swiss-Prot),   Q5DTF4 (UniProtKB/Swiss-Prot),   Q04843 (UniProtKB/Swiss-Prot),   A2AVE2 (UniProtKB/Swiss-Prot),   Q8VIK0 (UniProtKB/Swiss-Prot),   Q6PIX5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006514564   ⟸   XM_006514501
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006514557   ⟸   XM_006514494
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006514558   ⟸   XM_006514495
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006514562   ⟸   XM_006514499
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006514566   ⟸   XM_006514503
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006514559   ⟸   XM_006514496
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011241960   ⟸   XM_011243658
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001278747   ⟸   NM_001291818
- Peptide Label: isoform 2
- Sequence:
RefSeq Acc Id: XP_030101383   ⟸   XM_030245523
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030101386   ⟸   XM_030245526
- Peptide Label: isoform X8
RefSeq Acc Id: XP_030101384   ⟸   XM_030245524
- Peptide Label: isoform X5
- UniProtKB: Q6PJ49 (UniProtKB/Swiss-Prot),   Q6PIX5 (UniProtKB/Swiss-Prot),   Q5DTF4 (UniProtKB/Swiss-Prot),   Q04843 (UniProtKB/Swiss-Prot),   A2AVE2 (UniProtKB/Swiss-Prot),   Q8VIK0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030101385   ⟸   XM_030245525
- Peptide Label: isoform X5
- UniProtKB: Q6PJ49 (UniProtKB/Swiss-Prot),   Q6PIX5 (UniProtKB/Swiss-Prot),   Q5DTF4 (UniProtKB/Swiss-Prot),   Q04843 (UniProtKB/Swiss-Prot),   A2AVE2 (UniProtKB/Swiss-Prot),   Q8VIK0 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000118769   ⟸   ENSMUST00000150381
RefSeq Acc Id: ENSMUSP00000122533   ⟸   ENSMUST00000144902
RefSeq Acc Id: ENSMUSP00000117471   ⟸   ENSMUST00000143988
RefSeq Acc Id: ENSMUSP00000120543   ⟸   ENSMUST00000132578
RefSeq Acc Id: ENSMUSP00000020524   ⟸   ENSMUST00000020524
RefSeq Acc Id: ENSMUSP00000118985   ⟸   ENSMUST00000146179
RefSeq Acc Id: XP_036012182   ⟸   XM_036156289
- Peptide Label: isoform X2
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PIX5-F1-model_v2 AlphaFold Q6PIX5 1-856 view protein structure

Promoters
RGD ID:6821728
Promoter ID:MM_KWN:6868
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000011980,   OTTMUST00000011981,   OTTMUST00000068469
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361132,110,636 - 32,111,136 (-)MPROMDB
RGD ID:6821724
Promoter ID:MM_KWN:6870
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Liver,   Lung
Transcripts:ENSMUST00000102828,   OTTMUST00000011977,   OTTMUST00000011978,   OTTMUST00000011979,   OTTMUST00000011982,   OTTMUST00000068468
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361132,121,936 - 32,122,877 (-)MPROMDB
RGD ID:8674226
Promoter ID:EPDNEW_M15144
Type:initiation region
Name:Rhbdf1_1
Description:Mus musculus rhomboid 5 homolog 1 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381132,222,290 - 32,222,350EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104328 AgrOrtholog
Ensembl Genes ENSMUSG00000020282 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020524 ENTREZGENE
  ENSMUST00000020524.15 UniProtKB/Swiss-Prot
  ENSMUST00000132578.8 UniProtKB/TrEMBL
  ENSMUST00000143988.2 UniProtKB/TrEMBL
  ENSMUST00000144902.2 UniProtKB/TrEMBL
  ENSMUST00000146179 ENTREZGENE
  ENSMUST00000146179.8 UniProtKB/TrEMBL
  ENSMUST00000150381.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1540.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Peptidase_S54_rhomboid_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhomboid-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhomboid_SP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13650 UniProtKB/Swiss-Prot
MGD MGI:104328 ENTREZGENE
NCBI Gene 13650 ENTREZGENE
PANTHER INACTIVE RHOMBOID PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  INACTIVE RHOMBOID PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Rhomboid UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Rhomboid_SP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rhbdf1 PhenoGen
Superfamily-SCOP SSF144091 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AVE2 ENTREZGENE
  A2AVE4_MOUSE UniProtKB/TrEMBL
  A2AVE5_MOUSE UniProtKB/TrEMBL
  A7M7T5_MOUSE UniProtKB/TrEMBL
  F2Z3W3_MOUSE UniProtKB/TrEMBL
  Q04843 ENTREZGENE
  Q5DTF4 ENTREZGENE
  Q6PIX5 ENTREZGENE
  Q6PJ49 ENTREZGENE
  Q8VIK0 ENTREZGENE
  RHDF1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary A2AVE2 UniProtKB/Swiss-Prot
  Q04843 UniProtKB/Swiss-Prot
  Q5DTF4 UniProtKB/Swiss-Prot
  Q6PJ49 UniProtKB/Swiss-Prot
  Q8VIK0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-29 Rhbdf1  rhomboid 5 homolog 1    rhomboid family 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED