SCRN3 (secernin 3) - Rat Genome Database

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Gene: SCRN3 (secernin 3) Homo sapiens
Analyze
Symbol: SCRN3
Name: secernin 3
RGD ID: 1312871
HGNC Page HGNC:30382
Description: Predicted to enable cysteine-type exopeptidase activity and dipeptidase activity. Predicted to be involved in proteolysis.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ23142; MGC149597; secernin-3; SES3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382174,395,730 - 174,430,071 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2174,395,730 - 174,429,575 (+)EnsemblGRCh38hg38GRCh38
GRCh372175,260,458 - 175,294,303 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362174,968,713 - 175,001,974 (+)NCBINCBI36Build 36hg18NCBI36
Build 342175,085,973 - 175,119,234NCBI
Celera2168,873,893 - 168,907,739 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2167,140,624 - 167,174,864 (+)NCBIHuRef
CHM1_12175,266,645 - 175,300,425 (+)NCBICHM1_1
T2T-CHM13v2.02174,884,418 - 174,918,718 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:11238933   PMID:12221138   PMID:12477932   PMID:14702039   PMID:15489334   PMID:15815621   PMID:16344560   PMID:21873635   PMID:21988832   PMID:26186194   PMID:28514442  
PMID:28986522   PMID:29513927   PMID:33961781   PMID:35256949   PMID:36215168  


Genomics

Comparative Map Data
SCRN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382174,395,730 - 174,430,071 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2174,395,730 - 174,429,575 (+)EnsemblGRCh38hg38GRCh38
GRCh372175,260,458 - 175,294,303 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362174,968,713 - 175,001,974 (+)NCBINCBI36Build 36hg18NCBI36
Build 342175,085,973 - 175,119,234NCBI
Celera2168,873,893 - 168,907,739 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2167,140,624 - 167,174,864 (+)NCBIHuRef
CHM1_12175,266,645 - 175,300,425 (+)NCBICHM1_1
T2T-CHM13v2.02174,884,418 - 174,918,718 (+)NCBIT2T-CHM13v2.0
Scrn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39273,142,980 - 73,168,158 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl273,142,945 - 73,168,162 (+)EnsemblGRCm39 Ensembl
GRCm38273,312,650 - 73,337,818 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl273,312,601 - 73,337,818 (+)EnsemblGRCm38mm10GRCm38
MGSCv37273,150,709 - 73,175,864 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36273,113,491 - 73,138,646 (+)NCBIMGSCv36mm8
Celera274,999,193 - 75,024,348 (+)NCBICelera
Cytogenetic Map2C3NCBI
cM Map243.57NCBI
Scrn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8378,596,330 - 78,621,132 (+)NCBIGRCr8
mRatBN7.2358,188,820 - 58,213,623 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl358,188,889 - 58,213,623 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx361,581,372 - 61,605,914 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0370,165,030 - 70,189,572 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0367,930,043 - 67,954,585 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0360,023,970 - 60,048,746 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl360,024,013 - 60,048,746 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0366,507,891 - 66,532,659 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4355,818,804 - 55,835,967 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1355,715,175 - 55,732,338 (+)NCBI
Celera357,724,365 - 57,741,522 (+)NCBICelera
Cytogenetic Map3q23NCBI
Scrn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955449935,659 - 958,460 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955449935,061 - 960,514 (-)NCBIChiLan1.0ChiLan1.0
SCRN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21377,060,356 - 77,094,587 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B77,075,335 - 77,109,562 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B61,673,624 - 61,707,934 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B179,127,935 - 179,161,560 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B179,127,961 - 179,161,560 (+)Ensemblpanpan1.1panPan2
SCRN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13618,453,027 - 18,476,122 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3618,453,050 - 18,474,047 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3618,462,257 - 18,485,153 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03618,589,069 - 18,611,852 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3618,589,132 - 18,611,833 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13618,666,216 - 18,688,988 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03618,664,543 - 18,687,532 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03618,774,956 - 18,798,269 (+)NCBIUU_Cfam_GSD_1.0
Scrn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303135,618,043 - 135,648,959 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365094,171,781 - 4,199,332 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365094,172,012 - 4,202,862 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCRN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1580,375,778 - 80,425,093 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11580,375,738 - 80,419,647 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21589,627,030 - 89,640,258 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCRN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11059,911,754 - 59,937,394 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1059,911,524 - 59,937,053 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040139,656,972 - 139,682,577 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scrn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478711,624,292 - 11,682,080 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478711,624,870 - 11,681,138 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SCRN3
18 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2q31.1-31.2(chr2:172779876-177598000)x1 copy number loss See cases [RCV000050765] Chr2:172779876..177598000 [GRCh38]
Chr2:173644604..178462728 [GRCh37]
Chr2:173352850..178170974 [NCBI36]
Chr2:2q31.1-31.2
pathogenic
GRCh38/hg38 2q24.3-31.1(chr2:164850117-175559190)x1 copy number loss See cases [RCV000051201] Chr2:164850117..175559190 [GRCh38]
Chr2:165706627..176423918 [GRCh37]
Chr2:165414873..176132164 [NCBI36]
Chr2:2q24.3-31.1
pathogenic
GRCh38/hg38 2q31.1(chr2:172366752-176361187)x1 copy number loss See cases [RCV000052554] Chr2:172366752..176361187 [GRCh38]
Chr2:173231480..177225915 [GRCh37]
Chr2:172939726..176934161 [NCBI36]
Chr2:2q31.1
pathogenic
GRCh38/hg38 2q31.1-31.2(chr2:173408061-177702487)x1 copy number loss See cases [RCV000052555] Chr2:173408061..177702487 [GRCh38]
Chr2:174272789..178567215 [GRCh37]
Chr2:173981035..178275461 [NCBI36]
Chr2:2q31.1-31.2
pathogenic
GRCh38/hg38 2q31.1(chr2:173699279-175586070)x1 copy number loss See cases [RCV000052556] Chr2:173699279..175586070 [GRCh38]
Chr2:174564007..176450798 [GRCh37]
Chr2:174272253..176159044 [NCBI36]
Chr2:2q31.1
pathogenic
GRCh38/hg38 2q31.1(chr2:173960458-175924594)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052557]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052557]|See cases [RCV000052557] Chr2:173960458..175924594 [GRCh38]
Chr2:174825186..176789322 [GRCh37]
Chr2:174533432..176497568 [NCBI36]
Chr2:2q31.1
pathogenic
GRCh38/hg38 2q24.3-32.1(chr2:163965382-182195062)x1 copy number loss See cases [RCV000054122] Chr2:163965382..182195062 [GRCh38]
Chr2:164821892..183059789 [GRCh37]
Chr2:164530138..182768034 [NCBI36]
Chr2:2q24.3-32.1
pathogenic
GRCh38/hg38 2q31.1-32.1(chr2:170407688-186189894)x1 copy number loss See cases [RCV000054127] Chr2:170407688..186189894 [GRCh38]
Chr2:171264198..187054621 [GRCh37]
Chr2:170972444..186762866 [NCBI36]
Chr2:2q31.1-32.1
pathogenic
NM_001193528.1(SCRN3):c.414G>A (p.Glu138=) single nucleotide variant Malignant melanoma [RCV000065206] Chr2:174401083 [GRCh38]
Chr2:175265811 [GRCh37]
Chr2:174974057 [NCBI36]
Chr2:2q31.1
not provided
GRCh38/hg38 2q31.1-32.2(chr2:171429233-189179568)x1 copy number loss See cases [RCV000136850] Chr2:171429233..189179568 [GRCh38]
Chr2:172285743..190044294 [GRCh37]
Chr2:171993989..189752539 [NCBI36]
Chr2:2q31.1-32.2
pathogenic
GRCh38/hg38 2q31.1(chr2:173713838-175467462)x3 copy number gain See cases [RCV000138664] Chr2:173713838..175467462 [GRCh38]
Chr2:174578566..176332190 [GRCh37]
Chr2:174286812..176040436 [NCBI36]
Chr2:2q31.1
uncertain significance|conflicting data from submitters
GRCh38/hg38 2q31.1(chr2:174343200-174549848)x1 copy number loss See cases [RCV000139193] Chr2:174343200..174549848 [GRCh38]
Chr2:175207928..175414576 [GRCh37]
Chr2:174916174..175122822 [NCBI36]
Chr2:2q31.1
uncertain significance
GRCh38/hg38 2q31.1-31.2(chr2:171513047-177854080)x1 copy number loss See cases [RCV000139646] Chr2:171513047..177854080 [GRCh38]
Chr2:172369557..178718807 [GRCh37]
Chr2:172077803..178427053 [NCBI36]
Chr2:2q31.1-31.2
pathogenic
GRCh38/hg38 2q24.1-31.1(chr2:154294042-175989372)x3 copy number gain See cases [RCV000142286] Chr2:154294042..175989372 [GRCh38]
Chr2:155150555..176854100 [GRCh37]
Chr2:154858801..176562346 [NCBI36]
Chr2:2q24.1-31.1
pathogenic
GRCh38/hg38 2q31.1(chr2:173713838-175467462)x1 copy number loss See cases [RCV000142878] Chr2:173713838..175467462 [GRCh38]
Chr2:174578566..176332190 [GRCh37]
Chr2:174286812..176040436 [NCBI36]
Chr2:2q31.1
pathogenic
GRCh38/hg38 2q31.1-31.3(chr2:174236451-181188846)x1 copy number loss See cases [RCV000143597] Chr2:174236451..181188846 [GRCh38]
Chr2:175101179..182053573 [GRCh37]
Chr2:174809425..181761818 [NCBI36]
Chr2:2q31.1-31.3
pathogenic
GRCh37/hg19 2q24.1-31.3(chr2:156489430-182921298)x3 copy number gain See cases [RCV000239848] Chr2:156489430..182921298 [GRCh37]
Chr2:2q24.1-31.3
pathogenic
GRCh37/hg19 2q31.1(chr2:174586724-176423918)x1 copy number loss See cases [RCV000240261] Chr2:174586724..176423918 [GRCh37]
Chr2:2q31.1
likely pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q31.1(chr2:174562039-175276727)x1 copy number loss See cases [RCV000447239] Chr2:174562039..175276727 [GRCh37]
Chr2:2q31.1
uncertain significance
GRCh37/hg19 2q31.1-35(chr2:169829974-215521436)x3 copy number gain See cases [RCV000448271] Chr2:169829974..215521436 [GRCh37]
Chr2:2q31.1-35
pathogenic
GRCh37/hg19 2q31.1(chr2:174573334-175268147)x1 copy number loss See cases [RCV000448480] Chr2:174573334..175268147 [GRCh37]
Chr2:2q31.1
uncertain significance
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q31.1(chr2:174783555-176832848)x1 copy number loss See cases [RCV000510266] Chr2:174783555..176832848 [GRCh37]
Chr2:2q31.1
uncertain significance
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q31.1(chr2:171667051-176832848)x3 copy number gain not provided [RCV000682159] Chr2:171667051..176832848 [GRCh37]
Chr2:2q31.1
pathogenic
GRCh37/hg19 2q31.1-31.2(chr2:173741558-178416381)x1 copy number loss not provided [RCV000682153] Chr2:173741558..178416381 [GRCh37]
Chr2:2q31.1-31.2
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q23.3-31.2(chr2:152409978-179325736)x3 copy number gain not provided [RCV000740654] Chr2:152409978..179325736 [GRCh37]
Chr2:2q23.3-31.2
pathogenic
GRCh37/hg19 2q31.1-31.3(chr2:174238257-181604341)x1 copy number loss not provided [RCV000740710] Chr2:174238257..181604341 [GRCh37]
Chr2:2q31.1-31.3
pathogenic
GRCh37/hg19 2q31.1-32.3(chr2:174690039-195521582)x1 copy number loss not provided [RCV001005359] Chr2:174690039..195521582 [GRCh37]
Chr2:2q31.1-32.3
pathogenic
GRCh37/hg19 2q31.1-32.1(chr2:173538954-186401606)x1 copy number loss not provided [RCV000846537] Chr2:173538954..186401606 [GRCh37]
Chr2:2q31.1-32.1
pathogenic
GRCh37/hg19 2q24.3-32.3(chr2:167329586-192756373)x1 copy number loss not provided [RCV000848216] Chr2:167329586..192756373 [GRCh37]
Chr2:2q24.3-32.3
pathogenic
GRCh37/hg19 2q31.1(chr2:173865202-175428639)x1 copy number loss not provided [RCV001005356] Chr2:173865202..175428639 [GRCh37]
Chr2:2q31.1
uncertain significance
GRCh37/hg19 2q24.2-34(chr2:163233162-211927188)x3 copy number gain not provided [RCV001005349] Chr2:163233162..211927188 [GRCh37]
Chr2:2q24.2-34
pathogenic
NM_024583.5(SCRN3):c.83A>G (p.Asp28Gly) single nucleotide variant Inborn genetic diseases [RCV003291287] Chr2:174398366 [GRCh38]
Chr2:175263094 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.1251_1263del (p.Asn417fs) microsatellite not provided [RCV000948609] Chr2:174427853..174427865 [GRCh38]
Chr2:175292581..175292593 [GRCh37]
Chr2:2q31.1
benign
GRCh37/hg19 2q31.1(chr2:174562000-175276727)x1 copy number loss not provided [RCV001005358] Chr2:174562000..175276727 [GRCh37]
Chr2:2q31.1
uncertain significance
GRCh37/hg19 2q24.2-31.3(chr2:163078055-182119617)x1 copy number loss 2q24 microdeletion syndrome [RCV001263223] Chr2:163078055..182119617 [GRCh37]
Chr2:2q24.2-31.3
pathogenic
GRCh37/hg19 2q31.1-31.3(chr2:171999572-182774361) copy number loss 3-4 finger syndactyly [RCV001352646] Chr2:171999572..182774361 [GRCh37]
Chr2:2q31.1-31.3
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:1-243199373) copy number gain Mosaic trisomy 2 [RCV002280628] Chr2:1..243199373 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q31.1(chr2:174573334-175268147) copy number loss not specified [RCV002053267] Chr2:174573334..175268147 [GRCh37]
Chr2:2q31.1
uncertain significance
GRCh37/hg19 2q31.1(chr2:174562039-175276727) copy number loss not specified [RCV002053266] Chr2:174562039..175276727 [GRCh37]
Chr2:2q31.1
uncertain significance
GRCh37/hg19 2q31.1(chr2:174673094-177275625)x3 copy number gain not provided [RCV001825257] Chr2:174673094..177275625 [GRCh37]
Chr2:2q31.1
not provided
GRCh37/hg19 2q31.1-35(chr2:169829974-215521436) copy number gain not specified [RCV002053265] Chr2:169829974..215521436 [GRCh37]
Chr2:2q31.1-35
pathogenic
Single allele deletion Split hand-foot malformation 5 [RCV002264898] Chr2:171524396..178694337 [GRCh37]
Chr2:2q31.1-31.2
pathogenic
NM_024583.5(SCRN3):c.413G>A (p.Gly138Asp) single nucleotide variant Inborn genetic diseases [RCV003302568] Chr2:174401061 [GRCh38]
Chr2:175265789 [GRCh37]
Chr2:2q31.1
uncertain significance
GRCh37/hg19 2q31.1-31.3(chr2:175143352-180999636)x1 copy number loss not provided [RCV002474570] Chr2:175143352..180999636 [GRCh37]
Chr2:2q31.1-31.3
pathogenic
NM_024583.5(SCRN3):c.1046T>C (p.Leu349Pro) single nucleotide variant Inborn genetic diseases [RCV002990807] Chr2:174424603 [GRCh38]
Chr2:175289331 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.202G>A (p.Val68Ile) single nucleotide variant Inborn genetic diseases [RCV002733814] Chr2:174399964 [GRCh38]
Chr2:175264692 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.1132G>C (p.Glu378Gln) single nucleotide variant Inborn genetic diseases [RCV002749259] Chr2:174427752 [GRCh38]
Chr2:175292480 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.860C>T (p.Pro287Leu) single nucleotide variant Inborn genetic diseases [RCV002840062] Chr2:174422990 [GRCh38]
Chr2:175287718 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.592C>T (p.Arg198Trp) single nucleotide variant Inborn genetic diseases [RCV002689119] Chr2:174404153 [GRCh38]
Chr2:175268881 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.495G>C (p.Trp165Cys) single nucleotide variant Inborn genetic diseases [RCV002779072] Chr2:174401143 [GRCh38]
Chr2:175265871 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.613A>C (p.Asn205His) single nucleotide variant Inborn genetic diseases [RCV002980448] Chr2:174404174 [GRCh38]
Chr2:175268902 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.28G>A (p.Val10Met) single nucleotide variant Inborn genetic diseases [RCV002742750] Chr2:174398311 [GRCh38]
Chr2:175263039 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.190G>C (p.Glu64Gln) single nucleotide variant Inborn genetic diseases [RCV002831284] Chr2:174399952 [GRCh38]
Chr2:175264680 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.683T>C (p.Leu228Pro) single nucleotide variant Inborn genetic diseases [RCV002940677] Chr2:174404244 [GRCh38]
Chr2:175268972 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.550C>T (p.Arg184Cys) single nucleotide variant Inborn genetic diseases [RCV002941396] Chr2:174404111 [GRCh38]
Chr2:175268839 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.164C>A (p.Thr55Lys) single nucleotide variant Inborn genetic diseases [RCV002677485] Chr2:174399926 [GRCh38]
Chr2:175264654 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.167A>G (p.Tyr56Cys) single nucleotide variant Inborn genetic diseases [RCV003203005] Chr2:174399929 [GRCh38]
Chr2:175264657 [GRCh37]
Chr2:2q31.1
uncertain significance
NM_024583.5(SCRN3):c.692C>T (p.Ala231Val) single nucleotide variant Inborn genetic diseases [RCV003344627] Chr2:174404253 [GRCh38]
Chr2:175268981 [GRCh37]
Chr2:2q31.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1942
Count of miRNA genes:818
Interacting mature miRNAs:971
Transcripts:ENST00000272732, ENST00000409673, ENST00000424069, ENST00000427038, ENST00000435964, ENST00000437944, ENST00000458563, ENST00000475928, ENST00000488349, ENST00000490927, ENST00000548031, ENST00000548868, ENST00000548921, ENST00000549848
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
G42934  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372175,294,639 - 175,294,788UniSTSGRCh37
Build 362175,002,885 - 175,003,034RGDNCBI36
Celera2168,908,075 - 168,908,224RGD
Cytogenetic Map2q31.1UniSTS
HuRef2167,175,200 - 167,175,349UniSTS
G43281  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372175,263,572 - 175,263,702UniSTSGRCh37
Build 362174,971,818 - 174,971,948RGDNCBI36
Celera2168,877,013 - 168,877,143RGD
Cytogenetic Map2q31.1UniSTS
HuRef2167,143,745 - 167,143,875UniSTS
G60089  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372175,263,591 - 175,263,692UniSTSGRCh37
Build 362174,971,837 - 174,971,938RGDNCBI36
Celera2168,877,032 - 168,877,133RGD
Cytogenetic Map2q31.1UniSTS
HuRef2167,143,764 - 167,143,865UniSTS
TNG Radiation Hybrid Map296896.0UniSTS
WI-15486  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372175,292,786 - 175,292,889UniSTSGRCh37
Build 362175,001,032 - 175,001,135RGDNCBI36
Celera2168,906,222 - 168,906,325RGD
Cytogenetic Map2q31.1UniSTS
HuRef2167,173,347 - 167,173,450UniSTS
GeneMap99-GB4 RH Map2567.08UniSTS
Whitehead-RH Map2869.3UniSTS
D2S1626E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh374178,371,383 - 178,371,504UniSTSGRCh37
GRCh372175,294,647 - 175,294,751UniSTSGRCh37
Build 362175,002,893 - 175,002,997RGDNCBI36
Celera2168,908,083 - 168,908,187RGD
Celera4175,698,542 - 175,698,663UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map4q34.3UniSTS
HuRef4174,121,604 - 174,121,725UniSTS
HuRef2167,175,208 - 167,175,312UniSTS
GeneMap99-GB4 RH Map2567.39UniSTS
NCBI RH Map21415.4UniSTS
G20279  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372175,294,594 - 175,294,699UniSTSGRCh37
Build 362175,002,840 - 175,002,945RGDNCBI36
Celera2168,908,030 - 168,908,135RGD
Cytogenetic Map2q31.1UniSTS
HuRef2167,175,155 - 167,175,260UniSTS
RH35807  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372175,293,554 - 175,293,702UniSTSGRCh37
Build 362175,001,800 - 175,001,948RGDNCBI36
Celera2168,906,990 - 168,907,138RGD
Cytogenetic Map2q31.1UniSTS
HuRef2167,174,115 - 167,174,263UniSTS
GeneMap99-GB4 RH Map2567.59UniSTS
NCBI RH Map21345.4UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 296 278 687 104 465 98 656 376 1448 213 390 619 20 1 38 458 3 2
Low 2143 2550 1039 520 1346 367 3701 1798 2286 206 1070 994 155 1166 2330 3
Below cutoff 163 140 23

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001193528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001412212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_024583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005246856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA227619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC018470 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF279776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG492502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM725063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK301138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA760451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U61107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000272732   ⟹   ENSP00000272732
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,395,730 - 174,429,575 (+)Ensembl
RefSeq Acc Id: ENST00000409673   ⟹   ENSP00000387142
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,395,745 - 174,428,417 (+)Ensembl
RefSeq Acc Id: ENST00000424069   ⟹   ENSP00000402086
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,395,792 - 174,400,103 (+)Ensembl
RefSeq Acc Id: ENST00000427038   ⟹   ENSP00000408376
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,395,808 - 174,401,054 (+)Ensembl
RefSeq Acc Id: ENST00000435964   ⟹   ENSP00000394024
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,395,752 - 174,398,314 (+)Ensembl
RefSeq Acc Id: ENST00000437944   ⟹   ENSP00000400421
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,395,730 - 174,427,864 (+)Ensembl
RefSeq Acc Id: ENST00000458563   ⟹   ENSP00000396884
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,395,741 - 174,404,210 (+)Ensembl
RefSeq Acc Id: ENST00000475928
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,410,344 - 174,428,035 (+)Ensembl
RefSeq Acc Id: ENST00000488349
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,395,795 - 174,397,404 (+)Ensembl
RefSeq Acc Id: ENST00000490927
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,395,743 - 174,424,570 (+)Ensembl
RefSeq Acc Id: ENST00000548031   ⟹   ENSP00000446727
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,398,195 - 174,404,190 (+)Ensembl
RefSeq Acc Id: ENST00000548868   ⟹   ENSP00000447307
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,395,730 - 174,428,317 (+)Ensembl
RefSeq Acc Id: ENST00000548921
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,410,037 - 174,428,859 (+)Ensembl
RefSeq Acc Id: ENST00000549848
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2174,410,082 - 174,427,895 (+)Ensembl
RefSeq Acc Id: NM_001193528   ⟹   NP_001180457
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382174,395,730 - 174,429,575 (+)NCBI
GRCh372175,260,457 - 175,294,303 (+)RGD
Celera2168,873,893 - 168,907,739 (+)RGD
HuRef2167,140,624 - 167,174,864 (+)RGD
CHM1_12175,266,645 - 175,300,425 (+)NCBI
T2T-CHM13v2.02174,884,418 - 174,918,222 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001412202   ⟹   NP_001399131
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382174,395,730 - 174,430,071 (+)NCBI
RefSeq Acc Id: NM_001412203   ⟹   NP_001399132
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382174,395,730 - 174,430,071 (+)NCBI
RefSeq Acc Id: NM_001412204   ⟹   NP_001399133
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382174,395,730 - 174,430,071 (+)NCBI
RefSeq Acc Id: NM_001412205   ⟹   NP_001399134
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382174,395,730 - 174,430,071 (+)NCBI
RefSeq Acc Id: NM_001412206   ⟹   NP_001399135
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382174,395,730 - 174,430,071 (+)NCBI
RefSeq Acc Id: NM_001412207   ⟹   NP_001399136
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382174,395,730 - 174,430,071 (+)NCBI
RefSeq Acc Id: NM_001412208   ⟹   NP_001399137
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382174,395,730 - 174,430,071 (+)NCBI
RefSeq Acc Id: NM_001412209   ⟹   NP_001399138
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382174,395,730 - 174,430,071 (+)NCBI
RefSeq Acc Id: NM_001412210   ⟹   NP_001399139
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382174,395,730 - 174,430,071 (+)NCBI
RefSeq Acc Id: NM_001412212   ⟹   NP_001399141
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02174,884,418 - 174,918,718 (+)NCBI
RefSeq Acc Id: NM_024583   ⟹   NP_078859
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382174,395,730 - 174,429,575 (+)NCBI
GRCh372175,260,457 - 175,294,303 (+)RGD
Build 362174,968,713 - 175,001,974 (+)NCBI Archive
Celera2168,873,893 - 168,907,739 (+)RGD
HuRef2167,140,624 - 167,174,864 (+)RGD
CHM1_12175,266,645 - 175,300,425 (+)NCBI
T2T-CHM13v2.02174,884,418 - 174,918,222 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001180457 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399131 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399132 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399133 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399134 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399135 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399136 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399137 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399138 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399139 (Get FASTA)   NCBI Sequence Viewer  
  NP_001399141 (Get FASTA)   NCBI Sequence Viewer  
  NP_078859 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH31821 (Get FASTA)   NCBI Sequence Viewer  
  AAI19685 (Get FASTA)   NCBI Sequence Viewer  
  AAI19686 (Get FASTA)   NCBI Sequence Viewer  
  AAY24217 (Get FASTA)   NCBI Sequence Viewer  
  BAB15555 (Get FASTA)   NCBI Sequence Viewer  
  BAG58323 (Get FASTA)   NCBI Sequence Viewer  
  BAG59179 (Get FASTA)   NCBI Sequence Viewer  
  EAX11140 (Get FASTA)   NCBI Sequence Viewer  
  EAX11141 (Get FASTA)   NCBI Sequence Viewer  
  EAX11142 (Get FASTA)   NCBI Sequence Viewer  
  EAX11143 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000272732
  ENSP00000272732.6
  ENSP00000387142
  ENSP00000387142.3
  ENSP00000394024.1
  ENSP00000396884.1
  ENSP00000400421.1
  ENSP00000402086.1
  ENSP00000408376.1
  ENSP00000446727.1
  ENSP00000447307.1
GenBank Protein Q0VDG4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_078859   ⟸   NM_024583
- Peptide Label: isoform 1
- UniProtKB: Q7L1C5 (UniProtKB/Swiss-Prot),   D3DPE0 (UniProtKB/Swiss-Prot),   C9JPC1 (UniProtKB/Swiss-Prot),   B4DI11 (UniProtKB/Swiss-Prot),   Q9H5R5 (UniProtKB/Swiss-Prot),   Q0VDG4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001180457   ⟸   NM_001193528
- Peptide Label: isoform 2
- UniProtKB: Q0VDG4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000400421   ⟸   ENST00000437944
RefSeq Acc Id: ENSP00000402086   ⟸   ENST00000424069
RefSeq Acc Id: ENSP00000408376   ⟸   ENST00000427038
RefSeq Acc Id: ENSP00000447307   ⟸   ENST00000548868
RefSeq Acc Id: ENSP00000446727   ⟸   ENST00000548031
RefSeq Acc Id: ENSP00000272732   ⟸   ENST00000272732
RefSeq Acc Id: ENSP00000396884   ⟸   ENST00000458563
RefSeq Acc Id: ENSP00000387142   ⟸   ENST00000409673
RefSeq Acc Id: ENSP00000394024   ⟸   ENST00000435964
RefSeq Acc Id: NP_001399131   ⟸   NM_001412202
- Peptide Label: isoform 1
- UniProtKB: Q7L1C5 (UniProtKB/Swiss-Prot),   Q0VDG4 (UniProtKB/Swiss-Prot),   D3DPE0 (UniProtKB/Swiss-Prot),   C9JPC1 (UniProtKB/Swiss-Prot),   B4DI11 (UniProtKB/Swiss-Prot),   Q9H5R5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001399133   ⟸   NM_001412204
- Peptide Label: isoform 1
- UniProtKB: Q7L1C5 (UniProtKB/Swiss-Prot),   Q0VDG4 (UniProtKB/Swiss-Prot),   D3DPE0 (UniProtKB/Swiss-Prot),   C9JPC1 (UniProtKB/Swiss-Prot),   B4DI11 (UniProtKB/Swiss-Prot),   Q9H5R5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001399137   ⟸   NM_001412208
- Peptide Label: isoform 1
- UniProtKB: Q7L1C5 (UniProtKB/Swiss-Prot),   Q0VDG4 (UniProtKB/Swiss-Prot),   D3DPE0 (UniProtKB/Swiss-Prot),   C9JPC1 (UniProtKB/Swiss-Prot),   B4DI11 (UniProtKB/Swiss-Prot),   Q9H5R5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001399132   ⟸   NM_001412203
- Peptide Label: isoform 1
- UniProtKB: Q7L1C5 (UniProtKB/Swiss-Prot),   Q0VDG4 (UniProtKB/Swiss-Prot),   D3DPE0 (UniProtKB/Swiss-Prot),   C9JPC1 (UniProtKB/Swiss-Prot),   B4DI11 (UniProtKB/Swiss-Prot),   Q9H5R5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001399136   ⟸   NM_001412207
- Peptide Label: isoform 1
- UniProtKB: Q7L1C5 (UniProtKB/Swiss-Prot),   Q0VDG4 (UniProtKB/Swiss-Prot),   D3DPE0 (UniProtKB/Swiss-Prot),   C9JPC1 (UniProtKB/Swiss-Prot),   B4DI11 (UniProtKB/Swiss-Prot),   Q9H5R5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001399139   ⟸   NM_001412210
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001399134   ⟸   NM_001412205
- Peptide Label: isoform 1
- UniProtKB: Q7L1C5 (UniProtKB/Swiss-Prot),   Q0VDG4 (UniProtKB/Swiss-Prot),   D3DPE0 (UniProtKB/Swiss-Prot),   C9JPC1 (UniProtKB/Swiss-Prot),   B4DI11 (UniProtKB/Swiss-Prot),   Q9H5R5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001399135   ⟸   NM_001412206
- Peptide Label: isoform 1
- UniProtKB: Q7L1C5 (UniProtKB/Swiss-Prot),   Q0VDG4 (UniProtKB/Swiss-Prot),   D3DPE0 (UniProtKB/Swiss-Prot),   C9JPC1 (UniProtKB/Swiss-Prot),   B4DI11 (UniProtKB/Swiss-Prot),   Q9H5R5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001399138   ⟸   NM_001412209
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001399141   ⟸   NM_001412212
- Peptide Label: isoform 5
- UniProtKB: Q0VDG5 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q0VDG4-F1-model_v2 AlphaFold Q0VDG4 1-424 view protein structure

Promoters
RGD ID:6862068
Promoter ID:EPDNEW_H4199
Type:initiation region
Name:SCRN3_1
Description:secernin 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382174,395,765 - 174,395,825EPDNEW
RGD ID:6798153
Promoter ID:HG_KWN:35987
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000409673,   NM_024583,   OTTHUMT00000255459,   OTTHUMT00000255460,   OTTHUMT00000334103,   OTTHUMT00000334104,   OTTHUMT00000334105,   OTTHUMT00000334106,   OTTHUMT00000334108,   OTTHUMT00000334109,   OTTHUMT00000334110,   OTTHUMT00000334123,   OTTHUMT00000334124,   UC002UIO.1,   UC002UIP.1,   UC002UIR.1
Position:
Human AssemblyChrPosition (strand)Source
Build 362174,968,606 - 174,969,287 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:30382 AgrOrtholog
COSMIC SCRN3 COSMIC
Ensembl Genes ENSG00000144306 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000272732 ENTREZGENE
  ENST00000272732.11 UniProtKB/Swiss-Prot
  ENST00000409673 ENTREZGENE
  ENST00000409673.7 UniProtKB/Swiss-Prot
  ENST00000424069.5 UniProtKB/TrEMBL
  ENST00000427038.5 UniProtKB/TrEMBL
  ENST00000435964.1 UniProtKB/TrEMBL
  ENST00000437944.5 UniProtKB/TrEMBL
  ENST00000458563.5 UniProtKB/TrEMBL
  ENST00000548031.1 UniProtKB/TrEMBL
  ENST00000548868.5 UniProtKB/TrEMBL
GTEx ENSG00000144306 GTEx
HGNC ID HGNC:30382 ENTREZGENE
Human Proteome Map SCRN3 Human Proteome Map
InterPro Peptidase_C69 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:79634 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 79634 ENTREZGENE
OMIM 614967 OMIM
PANTHER PTHR12994 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SECERNIN-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Peptidase_C69 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134974313 PharmGKB
UniProt A0A1D5RMN9_HUMAN UniProtKB/TrEMBL
  B4DI11 ENTREZGENE
  C9JID8_HUMAN UniProtKB/TrEMBL
  C9JNS3_HUMAN UniProtKB/TrEMBL
  C9JPC1 ENTREZGENE
  D3DPE0 ENTREZGENE
  F8W0M9_HUMAN UniProtKB/TrEMBL
  F8WBX0_HUMAN UniProtKB/TrEMBL
  H9KVC8_HUMAN UniProtKB/TrEMBL
  Q0VDG4 ENTREZGENE
  Q0VDG5 ENTREZGENE, UniProtKB/TrEMBL
  Q7L1C5 ENTREZGENE
  Q9H5R5 ENTREZGENE
  SCRN3_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B4DI11 UniProtKB/Swiss-Prot
  C9JPC1 UniProtKB/Swiss-Prot
  D3DPE0 UniProtKB/Swiss-Prot
  Q7L1C5 UniProtKB/Swiss-Prot
  Q9H5R5 UniProtKB/Swiss-Prot