Rbm5 (RNA binding motif protein 5) - Rat Genome Database
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Gene: Rbm5 (RNA binding motif protein 5) Mus musculus
Analyze
Symbol: Rbm5
Name: RNA binding motif protein 5
RGD ID: 1312864
MGI Page MGI
Description: Predicted to have mRNA binding activity. Predicted to be involved in positive regulation of apoptotic process; regulation of alternative mRNA splicing, via spliceosome; and spliceosomal complex assembly. Predicted to localize to nucleoplasm. Is expressed in central nervous system; lung; sensory organ; and testis. Orthologous to human RBM5 (RNA binding motif protein 5); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: D030069N10Rik; putative tumor suppressor LUCA15; RNA-binding motif protein 5; RNA-binding protein 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,617,694 - 107,648,228 (-)NCBIGRCm39mm39
GRCm389107,740,495 - 107,771,007 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,740,371 - 107,770,996 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,642,826 - 107,673,333 (-)NCBIGRCm37mm9NCBIm37
MGSCv369107,598,601 - 107,629,077 (-)NCBImm8
Celera9107,348,392 - 107,378,792 (-)NCBICelera
Cytogenetic Map9F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15741177  
PMID:15782199   PMID:16033648   PMID:16141072   PMID:16141073   PMID:16761314   PMID:18799693   PMID:21873635   PMID:22922362   PMID:23935508   PMID:24457600   PMID:25586139   PMID:26784654  
PMID:28378742   PMID:29176597   PMID:30178827   PMID:32325033   PMID:32335213  


Genomics

Comparative Map Data
Rbm5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,617,694 - 107,648,228 (-)NCBIGRCm39mm39
GRCm389107,740,495 - 107,771,007 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,740,371 - 107,770,996 (-)EnsemblGRCm38mm10GRCm38
MGSCv379107,642,826 - 107,673,333 (-)NCBIGRCm37mm9NCBIm37
MGSCv369107,598,601 - 107,629,077 (-)NCBImm8
Celera9107,348,392 - 107,378,792 (-)NCBICelera
Cytogenetic Map9F1NCBI
RBM5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl350,088,919 - 50,119,021 (+)EnsemblGRCh38hg38GRCh38
GRCh38350,088,919 - 50,119,021 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37350,126,341 - 50,156,397 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,101,372 - 50,131,397 (+)NCBINCBI36hg18NCBI36
Build 34350,101,371 - 50,131,394NCBI
Celera350,099,217 - 50,129,214 (+)NCBI
Cytogenetic Map3p21.31NCBI
HuRef350,182,063 - 50,212,095 (+)NCBIHuRef
CHM1_1350,078,630 - 50,108,661 (+)NCBICHM1_1
Rbm5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08116,502,941 - 116,532,178 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,502,937 - 116,532,169 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08115,857,578 - 115,886,811 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,995,731 - 113,024,356 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18113,015,442 - 113,042,767 (-)NCBI
Celera8107,726,813 - 107,755,403 (-)NCBICelera
Cytogenetic Map8q32NCBI
Rbm5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,929,043 - 1,956,812 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,929,540 - 1,957,297 (+)NCBIChiLan1.0ChiLan1.0
RBM5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1351,251,889 - 51,282,338 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,251,911 - 51,282,338 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0350,017,199 - 50,047,248 (+)NCBIMhudiblu_PPA_v0panPan3
RBM5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2039,199,154 - 39,227,769 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12039,198,706 - 39,227,856 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Rbm5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365291,639,919 - 1,672,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,579,983 - 32,612,712 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,579,780 - 32,612,716 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,759,830 - 35,791,851 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBM5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl2211,473,494 - 11,507,096 (+)Ensembl
ChlSab1.12211,473,623 - 11,505,251 (+)NCBI
Rbm5
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,969,445 - 4,000,587 (+)NCBI

Position Markers
Rbm5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9F1UniSTS
cM Map9 UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2681
Count of miRNA genes:800
Interacting mature miRNAs:1078
Transcripts:ENSMUST00000035199, ENSMUST00000181993, ENSMUST00000182007, ENSMUST00000182022, ENSMUST00000182026, ENSMUST00000182073, ENSMUST00000182215, ENSMUST00000182304, ENSMUST00000182332, ENSMUST00000182371, ENSMUST00000182421, ENSMUST00000182422, ENSMUST00000182518, ENSMUST00000182659, ENSMUST00000182792, ENSMUST00000182836, ENSMUST00000182856, ENSMUST00000183248, ENSMUST00000183307
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001359524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_148930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_153191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006511876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC152718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ309168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW047301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC019766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC054820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY140862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000035199   ⟹   ENSMUSP00000035199
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,740,500 - 107,770,987 (-)Ensembl
RefSeq Acc Id: ENSMUST00000181993
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,769,185 - 107,770,959 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182007
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,758,444 - 107,770,959 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182022   ⟹   ENSMUSP00000138390
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,760,319 - 107,770,959 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182026   ⟹   ENSMUSP00000138526
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,741,964 - 107,744,286 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182073
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,765,091 - 107,770,989 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182215
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,743,333 - 107,744,234 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182304   ⟹   ENSMUSP00000138380
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,754,123 - 107,770,495 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182332
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,744,269 - 107,750,022 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182371   ⟹   ENSMUSP00000138119
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,740,500 - 107,770,980 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182421   ⟹   ENSMUSP00000138778
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,746,044 - 107,770,951 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182422
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,751,881 - 107,754,602 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182518
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,766,605 - 107,770,986 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182659   ⟹   ENSMUSP00000138379
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,740,371 - 107,770,996 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182792
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,745,194 - 107,749,911 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182836
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,750,293 - 107,751,962 (-)Ensembl
RefSeq Acc Id: ENSMUST00000182856
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,750,500 - 107,754,090 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183248   ⟹   ENSMUSP00000138294
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,760,384 - 107,770,945 (-)Ensembl
RefSeq Acc Id: ENSMUST00000183307
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,740,495 - 107,770,981 (-)Ensembl
RefSeq Acc Id: ENSMUST00000192130   ⟹   ENSMUSP00000142194
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,754,095 - 107,770,972 (-)Ensembl
RefSeq Acc Id: ENSMUST00000193342   ⟹   ENSMUSP00000141829
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,751,910 - 107,767,597 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194400   ⟹   ENSMUSP00000142324
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,746,145 - 107,751,910 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194682
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,754,099 - 107,757,260 (-)Ensembl
RefSeq Acc Id: ENSMUST00000194801
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,740,496 - 107,760,563 (-)Ensembl
RefSeq Acc Id: NM_001359524   ⟹   NP_001346453
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,648,201 (-)NCBI
GRCm389107,740,495 - 107,771,002 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359525   ⟹   NP_001346454
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,648,201 (-)NCBI
GRCm389107,740,495 - 107,771,002 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359526   ⟹   NP_001346455
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,648,201 (-)NCBI
GRCm389107,740,495 - 107,771,002 (-)NCBI
Sequence:
RefSeq Acc Id: NM_148930   ⟹   NP_683732
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,648,201 (-)NCBI
GRCm389107,740,495 - 107,771,002 (-)NCBI
MGSCv379107,642,826 - 107,673,333 (-)RGD
Celera9107,348,392 - 107,378,792 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_153190
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,648,201 (-)NCBI
GRCm389107,740,495 - 107,771,002 (-)NCBI
Sequence:
RefSeq Acc Id: NR_153191
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,648,201 (-)NCBI
GRCm389107,740,495 - 107,771,002 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511872   ⟹   XP_006511935
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,648,205 (-)NCBI
GRCm389107,740,495 - 107,771,006 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511875   ⟹   XP_006511938
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,648,204 (-)NCBI
GRCm389107,740,495 - 107,771,005 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511876   ⟹   XP_006511939
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,644,796 (-)NCBI
GRCm389107,740,495 - 107,767,597 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244732   ⟹   XP_030100592
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,648,204 (-)NCBI
GRCm389107,740,495 - 107,770,855 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244733   ⟹   XP_030100593
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,648,057 (-)NCBI
GRCm389107,740,495 - 107,770,855 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244734   ⟹   XP_030100594
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,648,093 (-)NCBI
GRCm389107,740,495 - 107,770,897 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244735   ⟹   XP_030100595
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,648,204 (-)NCBI
GRCm389107,740,495 - 107,771,006 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001779079
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,617,694 - 107,648,228 (-)NCBI
GRCm389107,740,495 - 107,771,007 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001346453 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346454 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346455 (Get FASTA)   NCBI Sequence Viewer  
  NP_683732 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511935 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511938 (Get FASTA)   NCBI Sequence Viewer  
  XP_006511939 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100592 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100593 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100594 (Get FASTA)   NCBI Sequence Viewer  
  XP_030100595 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH03988 (Get FASTA)   NCBI Sequence Viewer  
  AAH19766 (Get FASTA)   NCBI Sequence Viewer  
  AAH23854 (Get FASTA)   NCBI Sequence Viewer  
  AAH31899 (Get FASTA)   NCBI Sequence Viewer  
  AAH43058 (Get FASTA)   NCBI Sequence Viewer  
  AAH54729 (Get FASTA)   NCBI Sequence Viewer  
  BAE21974 (Get FASTA)   NCBI Sequence Viewer  
  BAE22042 (Get FASTA)   NCBI Sequence Viewer  
  BAE27501 (Get FASTA)   NCBI Sequence Viewer  
  CAC69136 (Get FASTA)   NCBI Sequence Viewer  
  EDL21224 (Get FASTA)   NCBI Sequence Viewer  
  EDL21225 (Get FASTA)   NCBI Sequence Viewer  
  EDL21226 (Get FASTA)   NCBI Sequence Viewer  
  EDL21227 (Get FASTA)   NCBI Sequence Viewer  
  EDL21228 (Get FASTA)   NCBI Sequence Viewer  
  Q91YE7 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_683732   ⟸   NM_148930
- Peptide Label: isoform 1
- UniProtKB: Q91YE7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511938   ⟸   XM_006511875
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006511935   ⟸   XM_006511872
- Peptide Label: isoform X1
- UniProtKB: Q91YE7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511939   ⟸   XM_006511876
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030100595   ⟸   XM_030244735
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001346453   ⟸   NM_001359524
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001346454   ⟸   NM_001359525
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001346455   ⟸   NM_001359526
- Peptide Label: isoform 1
RefSeq Acc Id: XP_030100594   ⟸   XM_030244734
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030100593   ⟸   XM_030244733
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030100592   ⟸   XM_030244732
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000138294   ⟸   ENSMUST00000183248
RefSeq Acc Id: ENSMUSP00000138379   ⟸   ENSMUST00000182659
RefSeq Acc Id: ENSMUSP00000035199   ⟸   ENSMUST00000035199
RefSeq Acc Id: ENSMUSP00000142324   ⟸   ENSMUST00000194400
RefSeq Acc Id: ENSMUSP00000141829   ⟸   ENSMUST00000193342
RefSeq Acc Id: ENSMUSP00000142194   ⟸   ENSMUST00000192130
RefSeq Acc Id: ENSMUSP00000138380   ⟸   ENSMUST00000182304
RefSeq Acc Id: ENSMUSP00000138119   ⟸   ENSMUST00000182371
RefSeq Acc Id: ENSMUSP00000138778   ⟸   ENSMUST00000182421
RefSeq Acc Id: ENSMUSP00000138526   ⟸   ENSMUST00000182026
RefSeq Acc Id: ENSMUSP00000138390   ⟸   ENSMUST00000182022
Protein Domains
C2H2-type   G-patch   RanBP2-type   RRM

Promoters
RGD ID:6848463
Promoter ID:MM_ACW:51972
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:RBM5.HSEP07,   RBM5.LSEP07,   RBM5.RSEP07,   RBM5.VBSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,647,471 - 107,653,622 (-)MPROMDB
RGD ID:6845026
Promoter ID:MM_KWN:58741
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain
Transcripts:UC009RMV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,654,669 - 107,655,169 (-)MPROMDB
RGD ID:6845025
Promoter ID:MM_KWN:58742
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   MEF_B6
Transcripts:UC009RMW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,662,651 - 107,663,852 (-)MPROMDB
RGD ID:6845027
Promoter ID:MM_KWN:58743
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_148930,   UC009RMY.1,   UC009RMZ.1,   UC009RNA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369107,673,161 - 107,673,661 (-)MPROMDB
RGD ID:8670826
Promoter ID:EPDNEW_M13443
Type:single initiation site
Name:Rbm5_2
Description:Mus musculus RNA binding motif protein 5 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13444  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389107,757,534 - 107,757,594EPDNEW
RGD ID:8670828
Promoter ID:EPDNEW_M13444
Type:initiation region
Name:Rbm5_1
Description:Mus musculus RNA binding motif protein 5 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13443  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389107,770,996 - 107,771,056EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1933204 AgrOrtholog
Ensembl Genes ENSMUSG00000032580 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000035199 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000138119 UniProtKB/TrEMBL
  ENSMUSP00000138294 UniProtKB/TrEMBL
  ENSMUSP00000138379 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000138380 UniProtKB/TrEMBL
  ENSMUSP00000138390 UniProtKB/TrEMBL
  ENSMUSP00000138526 UniProtKB/TrEMBL
  ENSMUSP00000138778 UniProtKB/TrEMBL
  ENSMUSP00000141829 UniProtKB/TrEMBL
  ENSMUSP00000142194 UniProtKB/TrEMBL
  ENSMUSP00000142324 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035199 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000182022 UniProtKB/TrEMBL
  ENSMUST00000182026 UniProtKB/TrEMBL
  ENSMUST00000182304 UniProtKB/TrEMBL
  ENSMUST00000182371 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000182421 UniProtKB/TrEMBL
  ENSMUST00000182659 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000183248 UniProtKB/TrEMBL
  ENSMUST00000192130 UniProtKB/TrEMBL
  ENSMUST00000193342 UniProtKB/TrEMBL
  ENSMUST00000194400 UniProtKB/TrEMBL
  ENSMUST00000194801 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro G_patch_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OCRE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM5_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM5_RRM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RanBP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RanBP2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:83486 UniProtKB/Swiss-Prot
MGD MGI:1933204 ENTREZGENE
NCBI Gene 83486 ENTREZGENE
PANTHER PTHR13948:SF21 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam G-patch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OCRE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RanBP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rbm5 PhenoGen
PROSITE G_PATCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RANBP2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_RANBP2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART G_patch UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_RBZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF90209 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.259197 ENTREZGENE
UniProt A0A0A6YX44_MOUSE UniProtKB/TrEMBL
  A0A0A6YY86_MOUSE UniProtKB/TrEMBL
  Q05CY7_MOUSE UniProtKB/TrEMBL
  Q3UZ84_MOUSE UniProtKB/TrEMBL
  Q91YE7 ENTREZGENE, UniProtKB/Swiss-Prot
  S4R184_MOUSE UniProtKB/TrEMBL
  S4R1N4_MOUSE UniProtKB/TrEMBL
  S4R1U7_MOUSE UniProtKB/TrEMBL
  S4R1V5_MOUSE UniProtKB/TrEMBL
  S4R273_MOUSE UniProtKB/TrEMBL
  S4R2T4_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UZ19 UniProtKB/Swiss-Prot
  Q99KV9 UniProtKB/Swiss-Prot