Cyfip2 (cytoplasmic FMR1 interacting protein 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cyfip2 (cytoplasmic FMR1 interacting protein 2) Mus musculus
Analyze
Symbol: Cyfip2
Name: cytoplasmic FMR1 interacting protein 2
RGD ID: 1312846
MGI Page MGI
Description: Predicted to enable small GTPase binding activity. Involved in dendrite extension and positive regulation of neurotrophin TRK receptor signaling pathway. Located in synapse. Part of SCAR complex. Is expressed in several structures, including central nervous system; sensory organ; skeleton; trigeminal nerve; and urinary system. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 65. Orthologous to human CYFIP2 (cytoplasmic FMR1 interacting protein 2); PARTICIPATES IN E-cadherin signaling pathway; platelet-derived growth factor signaling pathway; INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1500004I01Rik; 6430511D02Rik; AA930218; AU022376; cytoplasmic FMR1-interacting protein 2; mKIAA1168; p53-inducible protein 121; Pir; Pir121
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391146,084,676 - 46,203,686 (-)NCBIGRCm39mm39
GRCm39 Ensembl1146,084,677 - 46,203,686 (-)Ensembl
GRCm381146,193,849 - 46,312,859 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1146,193,850 - 46,312,859 (-)EnsemblGRCm38mm10GRCm38
MGSCv371146,007,360 - 46,125,852 (-)NCBIGRCm37mm9NCBIm37
MGSCv361146,037,281 - 46,155,773 (-)NCBImm8
Celera1150,779,500 - 50,898,263 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-dinitrotoluene  (ISO)
2-butoxyethanol  (EXP)
2-methylcholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (ISO)
buta-1,3-diene  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chlordecone  (EXP)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) chloride  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (EXP)
ethyl methanesulfonate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
gentamycin  (ISO)
hydralazine  (ISO)
indole-3-methanol  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
leflunomide  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (EXP,ISO)
N,N-diethyl-m-toluamide  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
oxaliplatin  (ISO)
paracetamol  (ISO)
permethrin  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
poly(I:C)  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
sodium arsenate  (ISO)
sulforaphane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
topotecan  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
triptonide  (EXP)
tungsten  (EXP)
valproic acid  (EXP,ISO)
vancomycin  (EXP)
vinclozolin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10449408   PMID:11042159   PMID:11076861   PMID:11438699   PMID:11725301   PMID:12465718   PMID:12477932   PMID:15731336   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:18287559   PMID:18644894   PMID:18799693   PMID:20697350   PMID:21267068   PMID:21677750   PMID:21873635   PMID:21946561   PMID:23416452   PMID:24357318  
PMID:25432536   PMID:26428302   PMID:27507650   PMID:27524794   PMID:27605705   PMID:27914629   PMID:28671696   PMID:28692454   PMID:28706196   PMID:29539633   PMID:30068389   PMID:30196744  
PMID:30550785   PMID:30562941   PMID:30687000   PMID:31324746   PMID:32209386   PMID:32212159   PMID:32325033   PMID:32486060   PMID:32546772   PMID:32560809   PMID:32562430   PMID:32917241  


Genomics

Comparative Map Data
Cyfip2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391146,084,676 - 46,203,686 (-)NCBIGRCm39mm39
GRCm39 Ensembl1146,084,677 - 46,203,686 (-)Ensembl
GRCm381146,193,849 - 46,312,859 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1146,193,850 - 46,312,859 (-)EnsemblGRCm38mm10GRCm38
MGSCv371146,007,360 - 46,125,852 (-)NCBIGRCm37mm9NCBIm37
MGSCv361146,037,281 - 46,155,773 (-)NCBImm8
Celera1150,779,500 - 50,898,263 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
CYFIP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5157,266,079 - 157,395,595 (+)EnsemblGRCh38hg38GRCh38
GRCh385157,266,091 - 157,395,594 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375156,693,133 - 156,822,602 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365156,625,669 - 156,755,184 (+)NCBINCBI36hg18NCBI36
Build 345156,628,929 - 156,752,793NCBI
Celera5152,719,640 - 152,849,168 (+)NCBI
Cytogenetic Map5q33.3NCBI
HuRef5151,780,753 - 151,910,647 (+)NCBIHuRef
CHM1_15156,125,748 - 156,255,279 (+)NCBICHM1_1
Cyfip2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21030,621,318 - 30,741,113 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1030,621,318 - 30,741,113 (-)Ensembl
Rnor_6.01031,278,746 - 31,419,235 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1031,278,746 - 31,419,235 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01031,097,979 - 31,198,028 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41031,321,000 - 31,443,480 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11031,324,310 - 31,444,535 (-)NCBI
Celera1030,074,331 - 30,193,168 (-)NCBICelera
Cytogenetic Map10q21NCBI
Cyfip2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540811,462,837 - 11,588,378 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540811,483,891 - 11,586,628 (+)NCBIChiLan1.0ChiLan1.0
CYFIP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15159,288,779 - 159,418,077 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5159,292,029 - 159,418,077 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05152,667,136 - 152,796,575 (+)NCBIMhudiblu_PPA_v0panPan3
CYFIP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1452,769,638 - 52,875,080 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl452,743,048 - 52,880,589 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha452,661,797 - 52,785,745 (-)NCBI
ROS_Cfam_1.0453,206,203 - 53,330,066 (-)NCBI
UMICH_Zoey_3.1453,032,652 - 53,138,139 (-)NCBI
UNSW_CanFamBas_1.0453,139,468 - 53,263,349 (-)NCBI
UU_Cfam_GSD_1.0453,656,324 - 53,780,306 (-)NCBI
Cyfip2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213107,310,615 - 107,431,342 (-)NCBI
SpeTri2.0NW_0049365155,759,940 - 5,880,688 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CYFIP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1665,852,588 - 66,001,559 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11665,852,584 - 66,001,576 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21671,707,184 - 71,865,915 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CYFIP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12359,661,045 - 59,794,717 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2359,661,089 - 59,794,826 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603417,835,766 - 17,969,652 (-)NCBIVero_WHO_p1.0
Cyfip2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473331,996,717 - 32,115,571 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
AU022376  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381146,236,624 - 46,236,873UniSTSGRCm38
MGSCv371146,050,126 - 46,050,375UniSTSGRCm37
Celera1150,822,301 - 50,822,550UniSTS
Cytogenetic Map11B1.2UniSTS
Cytogenetic Map11B1.1UniSTS
Whitehead/MRC_RH11615.0UniSTS
AA930218  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381146,194,384 - 46,194,563UniSTSGRCm38
MGSCv371146,007,886 - 46,008,065UniSTSGRCm37
Celera1150,780,025 - 50,780,204UniSTS
Cytogenetic Map11B1.2UniSTS
Whitehead/MRC_RH11613.78UniSTS
UniSTS:236563  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381146,236,654 - 46,236,942UniSTSGRCm38
MGSCv371146,050,156 - 46,050,444UniSTSGRCm37
Celera1150,822,331 - 50,822,619UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map11B1.2UniSTS
21STS02  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381146,193,864 - 46,194,061UniSTSGRCm38
MGSCv371146,007,366 - 46,007,563UniSTSGRCm37
Celera1150,779,506 - 50,779,703UniSTS
Cytogenetic Map11B1.2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11330000060800000Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11330000063000000Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11330000072800000Mouse
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11470000046400000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11890000061500000Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111160000068600000Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111180000066100000Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1231863768609504Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111231863768609504Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111231863768609504Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1231863768609504Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1231863768609504Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111231863768609504Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1231863768609504Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1231863768609504Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1231863768609504Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111231863768609504Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111231863768609504Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111231863769794121Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111710617567187585Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111783196668609504Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111868778952687889Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111868778952687889Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111868778952687889Mouse
12801460Intim2_mintima modifier 2 (mouse)111868778952687889Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111939175053391888Mouse
14746971Manh70_mmandible shape 70 (mouse)112001506354015063Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2127257955272579Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112588179959881914Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112724805750745267Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112724805750745267Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112724805750745267Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112724805750745267Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112724805750745267Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112827504662275149Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112867832062678320Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112881775462817873Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113111738265117382Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113220975066209867Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113568778969794161Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113661246070618665Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113672273870723028Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113719011571190238Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113787775360511890Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113812528972125383Mouse
1300569Eae6b_msusceptibility to experimental allergic encephalomyelitis 6b (mouse)Not determined114005990154203622Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined114005990154203622Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
1300713Vmbic10_mventral midbrain iron content 10 (mouse)Not determined114288179954190238Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3458
Count of miRNA genes:616
Interacting mature miRNAs:779
Transcripts:ENSMUST00000093165, ENSMUST00000093166, ENSMUST00000129474, ENSMUST00000142017, ENSMUST00000165599
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001252460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB093288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF162472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF334144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK005148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL713958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD773967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ106488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ115523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000093165   ⟹   ENSMUSP00000090853
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1146,084,677 - 46,203,686 (-)Ensembl
GRCm38.p6 Ensembl1146,193,850 - 46,312,859 (-)Ensembl
RefSeq Acc Id: ENSMUST00000093166   ⟹   ENSMUSP00000090854
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1146,084,682 - 46,203,121 (-)Ensembl
GRCm38.p6 Ensembl1146,193,855 - 46,312,294 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129474   ⟹   ENSMUSP00000116715
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1146,182,404 - 46,203,047 (-)Ensembl
GRCm38.p6 Ensembl1146,291,577 - 46,312,220 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142017   ⟹   ENSMUSP00000119801
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1146,086,898 - 46,161,496 (-)Ensembl
GRCm38.p6 Ensembl1146,196,071 - 46,270,669 (-)Ensembl
RefSeq Acc Id: ENSMUST00000165599   ⟹   ENSMUSP00000127586
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1146,084,677 - 46,203,185 (-)Ensembl
GRCm38.p6 Ensembl1146,193,850 - 46,312,358 (-)Ensembl
RefSeq Acc Id: NM_001252459   ⟹   NP_001239388
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,084,676 - 46,203,686 (-)NCBI
GRCm381146,193,849 - 46,312,859 (-)ENTREZGENE
Celera1150,779,491 - 50,898,748 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001252460   ⟹   NP_001239389
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,084,676 - 46,203,185 (-)NCBI
GRCm381146,193,849 - 46,312,358 (-)NCBI
Celera1150,779,491 - 50,898,748 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_133769   ⟹   NP_598530
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,084,676 - 46,203,185 (-)NCBI
GRCm381146,193,849 - 46,312,358 (-)NCBI
MGSCv371146,007,360 - 46,125,852 (-)RGD
Celera1150,779,491 - 50,898,748 (-)ENTREZGENE
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534461   ⟹   XP_006534524
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,084,678 - 46,203,190 (-)NCBI
GRCm381146,193,855 - 46,312,363 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534462   ⟹   XP_006534525
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,084,678 - 46,203,190 (-)NCBI
GRCm381146,193,855 - 46,312,363 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534463   ⟹   XP_006534526
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,084,678 - 46,203,681 (-)NCBI
GRCm381146,193,855 - 46,312,854 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157084   ⟹   XP_036012977
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,084,678 - 46,200,578 (-)NCBI
RefSeq Acc Id: XM_036157085   ⟹   XP_036012978
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,119,585 - 46,203,190 (-)NCBI
RefSeq Acc Id: XM_036157086   ⟹   XP_036012979
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391146,127,727 - 46,203,190 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_598530   ⟸   NM_133769
- UniProtKB: Q5SQX6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001239388   ⟸   NM_001252459
- UniProtKB: Q5SQX6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001239389   ⟸   NM_001252460
- UniProtKB: Q5SQX6 (UniProtKB/Swiss-Prot),   Q6PGK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534526   ⟸   XM_006534463
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006534524   ⟸   XM_006534461
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006534525   ⟸   XM_006534462
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000090853   ⟸   ENSMUST00000093165
RefSeq Acc Id: ENSMUSP00000090854   ⟸   ENSMUST00000093166
RefSeq Acc Id: ENSMUSP00000127586   ⟸   ENSMUST00000165599
RefSeq Acc Id: ENSMUSP00000116715   ⟸   ENSMUST00000129474
RefSeq Acc Id: ENSMUSP00000119801   ⟸   ENSMUST00000142017
RefSeq Acc Id: XP_036012977   ⟸   XM_036157084
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036012978   ⟸   XM_036157085
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036012979   ⟸   XM_036157086
- Peptide Label: isoform X3
Protein Domains
DUF1394

Promoters
RGD ID:6820681
Promoter ID:MM_KWN:7092
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000012224
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361146,084,046 - 46,084,546 (-)MPROMDB
RGD ID:6820682
Promoter ID:MM_KWN:7094
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Lung,   Spleen
Transcripts:ENSMUST00000093165,   OTTMUST00000012223,   OTTMUST00000012225,   UC007IOB.1,   UC007IOD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361146,125,461 - 46,125,961 (-)MPROMDB
RGD ID:8674400
Promoter ID:EPDNEW_M15231
Type:initiation region
Name:Cyfip2_1
Description:Mus musculus cytoplasmic FMR1 interacting protein 2 , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381146,312,294 - 46,312,354EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924134 AgrOrtholog
Ensembl Genes ENSMUSG00000020340 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000090853 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000090854 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000116715 UniProtKB/TrEMBL
  ENSMUSP00000119801 UniProtKB/TrEMBL
  ENSMUSP00000127586 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000093165 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000093166 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000129474 UniProtKB/TrEMBL
  ENSMUST00000142017 UniProtKB/TrEMBL
  ENSMUST00000165599 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Cytoplasmic_FMR1-int UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DUF1394 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:76884 UniProtKB/Swiss-Prot
MGD MGI:1924134 ENTREZGENE
NCBI Gene 76884 ENTREZGENE
PANTHER PTHR12195 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1394 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FragX_IP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cyfip2 PhenoGen
PIRSF FMR1_interacting UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS CYTOFMRPINTP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CYFP2_MOUSE UniProtKB/Swiss-Prot
  F6QD74_MOUSE UniProtKB/TrEMBL
  F7C3H9_MOUSE UniProtKB/TrEMBL
  Q3V496_MOUSE UniProtKB/TrEMBL
  Q5SQX6 ENTREZGENE
  Q6PGK0 ENTREZGENE, UniProtKB/TrEMBL
  Q810V4_MOUSE UniProtKB/TrEMBL
  Q8K118_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UH21 UniProtKB/Swiss-Prot
  Q3UHS8 UniProtKB/Swiss-Prot
  Q8BSW0 UniProtKB/Swiss-Prot
  Q8CHA9 UniProtKB/Swiss-Prot
  Q924D3 UniProtKB/Swiss-Prot
  Q9R181 UniProtKB/Swiss-Prot