Dnajc9 (DnaJ heat shock protein family (Hsp40) member C9) - Rat Genome Database

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Gene: Dnajc9 (DnaJ heat shock protein family (Hsp40) member C9) Mus musculus
Analyze
Symbol: Dnajc9
Name: DnaJ heat shock protein family (Hsp40) member C9
RGD ID: 1312782
MGI Page MGI
Description: Predicted to enable heat shock protein binding activity; histone binding activity; and protein-folding chaperone binding activity. Predicted to be involved in nucleosome assembly. Predicted to be located in several cellular components, including cytosol; extracellular space; and nucleoplasm. Predicted to be part of protein folding chaperone complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including alimentary system; brain; connective tissue; genitourinary system; and immune system. Orthologous to human DNAJC9 (DnaJ heat shock protein family (Hsp40) member C9).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5330419I01Rik; AU020082; DnaJ (Hsp40) homolog, subfamily C, member 9; dnaJ homolog subfamily C member 9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391420,434,706 - 20,438,978 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1420,434,706 - 20,438,978 (-)EnsemblGRCm39 Ensembl
GRCm381420,384,638 - 20,388,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1420,384,638 - 20,388,910 (-)EnsemblGRCm38mm10GRCm38
MGSCv371421,203,860 - 21,208,132 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361419,173,190 - 19,177,432 (-)NCBIMGSCv36mm8
Celera1416,765,440 - 16,769,748 (-)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1411.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,6-dinitrotoluene  (ISO)
2-palmitoylglycerol  (ISO)
3-methylcholanthrene  (EXP)
4-hydroxyphenyl retinamide  (EXP)
7,12-dimethyltetraphene  (EXP)
aflatoxin B1  (EXP)
arsenous acid  (ISO)
atazanavir sulfate  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
chenodeoxycholic acid  (ISO)
chlorpyrifos  (EXP)
cisplatin  (EXP,ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
cyclosporin A  (ISO)
deoxycholic acid  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
folic acid  (EXP)
glycidyl methacrylate  (ISO)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
ivermectin  (ISO)
leflunomide  (ISO)
levofloxacin  (ISO)
methyl methanesulfonate  (ISO)
mitomycin C  (EXP)
N-nitrosodiethylamine  (EXP)
niclosamide  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP)
piroxicam  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
sunitinib  (ISO)
Sunset Yellow FCF  (ISO)
tartrazine  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
uranium atom  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750  
PMID:21873635   PMID:24194600   PMID:26365490   PMID:27626380   PMID:28378742   PMID:28671696   PMID:29091030   PMID:30196744   PMID:30335684   PMID:32325033  


Genomics

Comparative Map Data
Dnajc9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391420,434,706 - 20,438,978 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1420,434,706 - 20,438,978 (-)EnsemblGRCm39 Ensembl
GRCm381420,384,638 - 20,388,910 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1420,384,638 - 20,388,910 (-)EnsemblGRCm38mm10GRCm38
MGSCv371421,203,860 - 21,208,132 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361419,173,190 - 19,177,432 (-)NCBIMGSCv36mm8
Celera1416,765,440 - 16,769,748 (-)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1411.53NCBI
DNAJC9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381073,232,272 - 73,247,255 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1073,183,362 - 73,247,255 (-)EnsemblGRCh38hg38GRCh38
GRCh371075,001,712 - 75,007,013 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361074,672,588 - 74,677,031 (-)NCBINCBI36Build 36hg18NCBI36
Build 341074,672,589 - 74,677,031NCBI
Celera1068,288,205 - 68,292,648 (-)NCBICelera
Cytogenetic Map10q22.2NCBI
HuRef1068,996,442 - 69,000,885 (-)NCBIHuRef
CHM1_11075,284,299 - 75,288,742 (-)NCBICHM1_1
T2T-CHM13v2.01074,100,932 - 74,118,636 (-)NCBIT2T-CHM13v2.0
Dnajc9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8153,970,843 - 4,003,009 (+)NCBIGRCr8
mRatBN7.2153,923,842 - 3,928,118 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl153,923,268 - 3,928,118 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx153,933,948 - 3,938,224 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0155,320,369 - 5,324,645 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0153,932,765 - 3,937,041 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0154,356,512 - 4,360,788 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl154,356,261 - 4,360,564 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,458,010 - 8,462,286 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4154,152,480 - 4,156,756 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1154,152,574 - 4,156,532 (+)NCBI
Celera15666,953 - 671,229 (-)NCBICelera
Cytogenetic Map15p16NCBI
Dnajc9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543718,485,975 - 18,491,608 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543718,485,975 - 18,491,561 (+)NCBIChiLan1.0ChiLan1.0
DNAJC9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2885,353,143 - 85,423,112 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11085,358,441 - 85,428,593 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01069,790,478 - 69,796,518 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11072,241,056 - 72,255,339 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1072,248,454 - 72,255,339 (-)Ensemblpanpan1.1panPan2
DNAJC9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1423,820,714 - 23,825,624 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl423,821,304 - 23,825,484 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha423,958,256 - 23,964,996 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0424,101,342 - 24,108,737 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl424,101,345 - 24,110,612 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1423,998,951 - 24,006,315 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0424,198,370 - 24,205,801 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0424,554,243 - 24,561,606 (-)NCBIUU_Cfam_GSD_1.0
Dnajc9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721357,295,541 - 57,302,474 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365215,789,331 - 5,795,768 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365215,788,312 - 5,795,199 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNAJC9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1476,061,446 - 76,074,604 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11476,064,598 - 76,070,301 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21482,189,485 - 82,195,324 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DNAJC9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1958,022,723 - 58,029,134 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl958,024,549 - 58,028,317 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604818,607,556 - 18,615,066 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dnajc9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247546,913,397 - 6,919,476 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247546,913,377 - 6,920,533 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dnajc9
157 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:167
Interacting mature miRNAs:174
Transcripts:ENSMUST00000022345
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412071Ssen3_msuseptibility to Sendai virus 3 (mouse)Not determined14126987934Mouse
11532711Sluc40_msusceptibility to lung cancer 40 (mouse)14127379943Mouse
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141265Appd2_mAPP associated premature death 2 (mouse)Not determined14594555230114862Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse

Markers in Region
RH136351  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381420,384,923 - 20,385,109UniSTSGRCm38
MGSCv371421,204,145 - 21,204,331UniSTSGRCm37
Celera1416,765,725 - 16,765,911UniSTS
Cytogenetic Map14A3UniSTS
AU020082  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381420,384,926 - 20,385,011UniSTSGRCm38
MGSCv371421,204,148 - 21,204,233UniSTSGRCm37
Celera1416,765,728 - 16,765,813UniSTS
Cytogenetic Map14A3UniSTS
Whitehead/MRC_RH1425.26UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000022345   ⟹   ENSMUSP00000022345
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1420,434,706 - 20,438,978 (-)Ensembl
GRCm38.p6 Ensembl1420,384,638 - 20,388,910 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223844
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1420,438,089 - 20,438,889 (-)Ensembl
GRCm38.p6 Ensembl1420,388,021 - 20,388,821 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223889
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1420,435,298 - 20,438,469 (-)Ensembl
GRCm38.p6 Ensembl1420,385,230 - 20,388,401 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223950
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1420,437,530 - 20,438,944 (-)Ensembl
GRCm38.p6 Ensembl1420,387,462 - 20,388,876 (-)Ensembl
RefSeq Acc Id: NM_134081   ⟹   NP_598842
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391420,434,706 - 20,438,978 (-)NCBI
GRCm381420,384,638 - 20,388,910 (-)ENTREZGENE
MGSCv371421,203,860 - 21,208,132 (-)RGD
Celera1416,765,440 - 16,769,748 (-)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_598842   ⟸   NM_134081
- UniProtKB: Q3TSG3 (UniProtKB/Swiss-Prot),   Q8R0E3 (UniProtKB/Swiss-Prot),   Q91WN1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000022345   ⟸   ENSMUST00000022345
Protein Domains
J

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91WN1-F1-model_v2 AlphaFold Q91WN1 1-259 view protein structure

Promoters
RGD ID:8681590
Promoter ID:EPDNEW_M18826
Type:initiation region
Name:Dnajc9_1
Description:Mus musculus DnaJ heat shock protein family member C9 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381420,388,847 - 20,388,907EPDNEW
RGD ID:6824835
Promoter ID:MM_KWN:15789
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_134081,   UC007SJO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361421,208,091 - 21,209,117 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915326 AgrOrtholog
Ensembl Genes ENSMUSG00000021811 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000022345 ENTREZGENE
  ENSMUST00000022345.7 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.287.110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DnaJ_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DnaJ_domain_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  J_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:108671 UniProtKB/Swiss-Prot
MGD MGI:1915326 ENTREZGENE
NCBI Gene 108671 ENTREZGENE
PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 9 UniProtKB/Swiss-Prot
  DNAJ HOMOLOG SUBFAMILY C MEMBER 9 UniProtKB/Swiss-Prot
  DNAJ HOMOLOG SUBFAMILY C MEMBER 9 UniProtKB/TrEMBL
  DNAJ HOMOLOG SUBFAMILY C MEMBER 9 UniProtKB/TrEMBL
Pfam DnaJ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Dnajc9 PhenoGen
PRINTS JDOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE DNAJ_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  DNAJ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DnaJ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46565 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt DNJC9_MOUSE UniProtKB/Swiss-Prot
  Q3TSG3 ENTREZGENE
  Q8BRQ6_MOUSE UniProtKB/TrEMBL
  Q8R0E3 ENTREZGENE
  Q91WN1 ENTREZGENE
UniProt Secondary Q3TSG3 UniProtKB/Swiss-Prot
  Q8R0E3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-22 Dnajc9  DnaJ heat shock protein family (Hsp40) member C9    DnaJ (Hsp40) homolog, subfamily C, member 9  Symbol and/or name change 5135510 APPROVED