Exoc1 (exocyst complex component 1) - Rat Genome Database

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Gene: Exoc1 (exocyst complex component 1) Mus musculus
Analyze
Symbol: Exoc1
Name: exocyst complex component 1
RGD ID: 1312668
MGI Page MGI
Description: Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity. Acts upstream of or within embryo implantation. Predicted to be located in cytoplasm. Predicted to be part of exocyst. Predicted to be active in plasma membrane. Is expressed in fronto-nasal process mesenchyme; mandibular process mesenchyme; and maxillary process mesenchyme. Orthologous to human EXOC1 (exocyst complex component 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810407P21Rik; A730011E05Rik; exocyst complex component Sec3; SEC; SEC3; SEC3-like 1; Sec3l1; Sec3p
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Exoc1l  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39576,677,147 - 76,718,134 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl576,677,158 - 76,718,141 (+)EnsemblGRCm39 Ensembl
GRCm38576,529,307 - 76,570,298 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl576,529,311 - 76,570,294 (+)EnsemblGRCm38mm10GRCm38
MGSCv37576,958,348 - 76,999,310 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36577,604,086 - 77,645,073 (+)NCBIMGSCv36mm8
MGSCv36576,046,327 - 76,087,316 (+)NCBIMGSCv36mm8
Celera573,797,301 - 73,843,735 (+)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map541.28NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
exocyst  (IBA,NAS)
membrane  (IEA)
plasma membrane  (IBA,ISO,TAS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:15489334   PMID:15741177   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:18799693   PMID:21565611   PMID:21873635   PMID:22420621   PMID:26346620   PMID:26371508   PMID:27511831   PMID:27889896   PMID:32325033   PMID:32554809  
PMID:33013468   PMID:33378226   PMID:33973520   PMID:35587095   PMID:36417873  


Genomics

Comparative Map Data
Exoc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39576,677,147 - 76,718,134 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl576,677,158 - 76,718,141 (+)EnsemblGRCm39 Ensembl
GRCm38576,529,307 - 76,570,298 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl576,529,311 - 76,570,294 (+)EnsemblGRCm38mm10GRCm38
MGSCv37576,958,348 - 76,999,310 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36577,604,086 - 77,645,073 (+)NCBIMGSCv36mm8
MGSCv36576,046,327 - 76,087,316 (+)NCBIMGSCv36mm8
Celera573,797,301 - 73,843,735 (+)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map541.28NCBI
EXOC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38455,853,648 - 55,905,086 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl455,853,648 - 55,905,086 (+)EnsemblGRCh38hg38GRCh38
GRCh37456,719,814 - 56,771,252 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36456,414,573 - 56,466,001 (+)NCBINCBI36Build 36hg18NCBI36
Celera454,226,215 - 54,277,630 (+)NCBICelera
Cytogenetic Map4q12NCBI
HuRef452,673,696 - 52,725,109 (+)NCBIHuRef
CHM1_1456,754,973 - 56,806,432 (+)NCBICHM1_1
T2T-CHM13v2.0459,341,793 - 59,393,237 (+)NCBIT2T-CHM13v2.0
Exoc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81431,965,782 - 32,014,156 (-)NCBIGRCr8
mRatBN7.21431,611,536 - 31,659,920 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1431,611,547 - 31,659,914 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1431,987,967 - 32,036,989 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01433,295,857 - 33,344,876 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01431,780,978 - 31,829,997 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01434,132,210 - 34,192,296 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1434,132,221 - 34,177,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01433,923,763 - 33,958,422 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41433,895,938 - 33,933,231 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11433,895,939 - 33,933,231 (-)NCBI
Celera1430,939,904 - 30,973,166 (-)NCBICelera
Cytogenetic Map14p11NCBI
Exoc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544715,048,959 - 15,100,660 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544715,049,087 - 15,100,628 (-)NCBIChiLan1.0ChiLan1.0
EXOC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2373,880,401 - 73,932,058 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1474,085,893 - 74,137,485 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0468,024,177 - 68,075,565 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1474,591,574 - 74,642,955 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl474,591,574 - 74,642,955 (-)Ensemblpanpan1.1panPan2
EXOC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11348,109,773 - 48,177,070 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1348,109,810 - 48,176,177 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1348,001,315 - 48,068,611 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01348,723,688 - 48,790,993 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1348,723,718 - 48,790,993 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11348,397,897 - 48,465,133 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01347,925,412 - 47,992,453 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01348,872,399 - 48,937,323 (+)NCBIUU_Cfam_GSD_1.0
Exoc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528528,098,753 - 28,149,568 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648218,148,674 - 18,199,490 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648218,148,672 - 18,199,481 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl855,189,360 - 55,246,251 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1855,189,366 - 55,246,256 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2858,314,884 - 58,371,752 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EXOC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1712,705,657 - 12,757,996 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl712,705,305 - 12,757,989 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606613,377,449 - 13,429,831 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exoc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476113,494,483 - 13,556,289 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476113,496,443 - 13,556,233 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Exoc1
1598 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1161
Count of miRNA genes:522
Interacting mature miRNAs:606
Transcripts:ENSMUST00000049469, ENSMUST00000087133, ENSMUST00000113493, ENSMUST00000131470, ENSMUST00000132807, ENSMUST00000134521, ENSMUST00000137018, ENSMUST00000141884, ENSMUST00000143489, ENSMUST00000143736, ENSMUST00000150829
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
1301698Pcfm4_mperiosteal circumference and femur length 4 (mouse)Not determined54458584378585965Mouse
13207584Mwmlpt4_mMorris water maze latency to platform, training, 4 (mouse)54632260680322606Mouse
13207588Mwmlpa4_mMorris water maze latency to platform, all, 4 (mouse)54632260680322606Mouse
14746981Manh57_mmandible shape 57 (mouse)54716974281169742Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse
12904739M2fscn2_mmodifier 2 of FSCN2 (mouse)566529661100529661Mouse
12904740M1fscn2_mmodifier 1 of Fscn2 (mouse)566529661100529661Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
10043993Hbnr10_mHeligmosomoides bakeri nematode resistance 10 (mouse)Not determined572418876106419011Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
10412069Desp3_mdespair 3 (mouse)Not determined57293268477246203Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
4141124Dshv2_mdorsal hippocampal volume 2 (mouse)Not determined57531534898019803Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576190263110190479Mouse
4141505Chlq14_mcirculating hormone level QTL 14 (mouse)Not determined576280786110280917Mouse
1300986Hdlq2_mHDL QTL 2 (mouse)Not determined576280786110280917Mouse
1301691Cdcs10_mcytokine deficiency colitis susceptibility 10 (mouse)Not determined576280786110280917Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576445064110445225Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576445064110445225Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576445064110445225Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576445064110445225Mouse

Markers in Region
37.MMHAP35FRE10.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38576,533,081 - 76,533,255UniSTSGRCm38
MGSCv37576,962,106 - 76,962,280UniSTSGRCm37
Celera573,801,059 - 73,801,233UniSTS
Cytogenetic Map5E1UniSTS
Whitehead_YAC5 UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
UniSTS:235202  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38576,569,880 - 76,570,096UniSTSGRCm38
MGSCv37576,998,905 - 76,999,121UniSTSGRCm37
Cytogenetic Map5E1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001289770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001289771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK040212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB757059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB842768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC087543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000049469   ⟹   ENSMUSP00000046719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl576,677,205 - 76,718,134 (+)Ensembl
GRCm38.p6 Ensembl576,529,358 - 76,570,287 (+)Ensembl
RefSeq Acc Id: ENSMUST00000087133   ⟹   ENSMUSP00000084373
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl576,677,158 - 76,718,141 (+)Ensembl
GRCm38.p6 Ensembl576,529,311 - 76,570,294 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113493   ⟹   ENSMUSP00000109121
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl576,677,170 - 76,718,132 (+)Ensembl
GRCm38.p6 Ensembl576,529,323 - 76,570,285 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131470
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl576,677,191 - 76,709,649 (+)Ensembl
GRCm38.p6 Ensembl576,529,344 - 76,561,802 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132807
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl576,708,216 - 76,715,050 (+)Ensembl
GRCm38.p6 Ensembl576,560,369 - 76,567,203 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134521   ⟹   ENSMUSP00000121784
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl576,709,221 - 76,714,811 (+)Ensembl
GRCm38.p6 Ensembl576,561,374 - 76,566,964 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137018
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl576,677,205 - 76,688,955 (+)Ensembl
GRCm38.p6 Ensembl576,529,358 - 76,541,108 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141884
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl576,689,791 - 76,697,362 (+)Ensembl
GRCm38.p6 Ensembl576,541,944 - 76,549,515 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143489
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl576,709,083 - 76,715,863 (+)Ensembl
GRCm38.p6 Ensembl576,561,236 - 76,568,016 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl576,715,729 - 76,717,836 (+)Ensembl
GRCm38.p6 Ensembl576,567,882 - 76,569,989 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150829
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl576,677,175 - 76,687,582 (+)Ensembl
GRCm38.p6 Ensembl576,529,328 - 76,539,735 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl576,700,493 - 76,703,482 (+)Ensembl
GRCm38.p6 Ensembl576,552,646 - 76,555,635 (+)Ensembl
RefSeq Acc Id: NM_001289770   ⟹   NP_001276699
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,196 - 76,718,132 (+)NCBI
GRCm38576,529,311 - 76,570,298 (+)NCBI
Celera573,797,289 - 73,843,735 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001289771   ⟹   NP_001276700
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,196 - 76,718,132 (+)NCBI
GRCm38576,529,311 - 76,570,298 (+)NCBI
Celera573,797,289 - 73,843,735 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359370   ⟹   NP_001346299
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,196 - 76,718,132 (+)NCBI
GRCm38576,529,328 - 76,570,274 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359372   ⟹   NP_001346301
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,196 - 76,718,132 (+)NCBI
GRCm38576,529,307 - 76,570,274 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359373   ⟹   NP_001346302
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,205 - 76,688,955 (+)NCBI
GRCm38576,529,358 - 76,541,108 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001401325   ⟹   NP_001388254
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,196 - 76,718,132 (+)NCBI
RefSeq Acc Id: NM_001401326   ⟹   NP_001388255
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,196 - 76,708,309 (+)NCBI
RefSeq Acc Id: NM_027270   ⟹   NP_081546
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,196 - 76,718,132 (+)NCBI
GRCm38576,529,311 - 76,570,298 (+)NCBI
MGSCv37576,958,348 - 76,999,310 (+)RGD
Celera573,797,289 - 73,843,735 (+)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036165478   ⟹   XP_036021371
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,159 - 76,718,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165479   ⟹   XP_036021372
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,159 - 76,718,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165480   ⟹   XP_036021373
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,147 - 76,718,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165481   ⟹   XP_036021374
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,159 - 76,718,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165482   ⟹   XP_036021375
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,160 - 76,718,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165484   ⟹   XP_036021377
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,159 - 76,718,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165485   ⟹   XP_036021378
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,159 - 76,718,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165486   ⟹   XP_036021379
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,160 - 76,718,134 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165487   ⟹   XP_036021380
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39576,677,160 - 76,718,134 (+)NCBI
Sequence:
RefSeq Acc Id: NP_081546   ⟸   NM_027270
- Peptide Label: isoform 1
- UniProtKB: Q6P1Y9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001276699   ⟸   NM_001289770
- Peptide Label: isoform 2
- UniProtKB: E9QQ24 (UniProtKB/Swiss-Prot),   Q8R3S6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001276700   ⟸   NM_001289771
- Peptide Label: isoform 3
- UniProtKB: Q5PPR2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001346301   ⟸   NM_001359372
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001346299   ⟸   NM_001359370
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001346302   ⟸   NM_001359373
- Peptide Label: isoform 6
RefSeq Acc Id: ENSMUSP00000109121   ⟸   ENSMUST00000113493
RefSeq Acc Id: ENSMUSP00000046719   ⟸   ENSMUST00000049469
RefSeq Acc Id: ENSMUSP00000084373   ⟸   ENSMUST00000087133
RefSeq Acc Id: ENSMUSP00000121784   ⟸   ENSMUST00000134521
RefSeq Acc Id: XP_036021373   ⟸   XM_036165480
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036021371   ⟸   XM_036165478
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036021374   ⟸   XM_036165481
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036021372   ⟸   XM_036165479
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036021377   ⟸   XM_036165484
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036021378   ⟸   XM_036165485
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036021375   ⟸   XM_036165482
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036021379   ⟸   XM_036165486
- Peptide Label: isoform X8
RefSeq Acc Id: XP_036021380   ⟸   XM_036165487
- Peptide Label: isoform X9
RefSeq Acc Id: NP_001388254   ⟸   NM_001401325
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001388255   ⟸   NM_001401326
- Peptide Label: isoform 8
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8R3S6-F1-model_v2 AlphaFold Q8R3S6 1-894 view protein structure

Promoters
RGD ID:6886946
Promoter ID:EPDNEW_M6924
Type:initiation region
Name:Exoc1_1
Description:Mus musculus exocyst complex component 1 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38576,529,349 - 76,529,409EPDNEW
RGD ID:6837479
Promoter ID:MM_KWN:42633
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Lung,   MEF_B6
Transcripts:NM_027270,   OTTMUST00000065490,   OTTMUST00000065492,   OTTMUST00000065493,   UC008XUX.1,   UC008XUY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36576,958,161 - 76,958,767 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2445020 AgrOrtholog
Ensembl Genes ENSMUSG00000036435 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049469 ENTREZGENE
  ENSMUST00000049469.13 UniProtKB/TrEMBL
  ENSMUST00000087133 ENTREZGENE
  ENSMUST00000087133.11 UniProtKB/Swiss-Prot
  ENSMUST00000113493 ENTREZGENE
  ENSMUST00000113493.8 UniProtKB/TrEMBL
  ENSMUST00000134521.2 UniProtKB/TrEMBL
  ENSMUST00000137018 ENTREZGENE
Gene3D-CATH 2.30.29.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Sec3-PIP2_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec3_C UniProtKB/Swiss-Prot
  Sec3_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec3_C UniProtKB/TrEMBL
KEGG Report mmu:69940 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2445020 ENTREZGENE
NCBI Gene 69940 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEC3/SYNTAXIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sec3-PIP2_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec3_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sec3_C-term UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Exoc1 PhenoGen
SMART Sec3-PIP2_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E9QQ24 ENTREZGENE
  EXOC1_MOUSE UniProtKB/Swiss-Prot
  G3UVW9_MOUSE UniProtKB/TrEMBL
  Q3U1G4_MOUSE UniProtKB/TrEMBL
  Q5PPR2 ENTREZGENE, UniProtKB/TrEMBL
  Q6P1Y9 ENTREZGENE, UniProtKB/TrEMBL
  Q8R3S6 ENTREZGENE
UniProt Secondary E9QQ24 UniProtKB/Swiss-Prot