Prrc2b (proline-rich coiled-coil 2B) - Rat Genome Database

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Gene: Prrc2b (proline-rich coiled-coil 2B) Mus musculus
Analyze
Symbol: Prrc2b
Name: proline-rich coiled-coil 2B
RGD ID: 1312610
MGI Page MGI
Description: Acts upstream of or within in utero embryonic development. Is expressed in nervous system and sensory organ. Orthologous to human PRRC2B (proline rich coiled-coil 2B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5830434P21Rik; AI173903; Bat; Bat2l; Bat2l1; D430039P21; HLA-B associated transcript 2-like; HLA-B-associated transcript 2-like 1; mKIAA0515; proline-rich coiled-coil protein 2B; protein BAT2-like 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,041,002 - 32,124,549 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,041,094 - 32,124,549 (+)EnsemblGRCm39 Ensembl
GRCm38232,151,031 - 32,234,537 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,151,082 - 32,234,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,006,668 - 32,090,057 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36231,973,166 - 32,056,534 (+)NCBIMGSCv36mm8
Celera231,855,341 - 31,938,874 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12693553   PMID:12904583   PMID:14610273  
PMID:15033168   PMID:15226823   PMID:15489334   PMID:15747579   PMID:16141072   PMID:16141073   PMID:16452087   PMID:17967808   PMID:18799693   PMID:20059953   PMID:21267068   PMID:21677750  
PMID:21873635   PMID:22083510   PMID:25737280   PMID:27996060   PMID:28671696   PMID:29091030   PMID:29539633   PMID:30196744   PMID:30973865   PMID:31040226   PMID:31138677   PMID:32325033  
PMID:33378226   PMID:37142655   PMID:37395402   PMID:38355793   PMID:38507412   PMID:38822427  


Genomics

Comparative Map Data
Prrc2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,041,002 - 32,124,549 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,041,094 - 32,124,549 (+)EnsemblGRCm39 Ensembl
GRCm38232,151,031 - 32,234,537 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,151,082 - 32,234,537 (+)EnsemblGRCm38mm10GRCm38
MGSCv37232,006,668 - 32,090,057 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36231,973,166 - 32,056,534 (+)NCBIMGSCv36mm8
Celera231,855,341 - 31,938,874 (+)NCBICelera
Cytogenetic Map2BNCBI
cM Map222.05NCBI
PRRC2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389131,373,651 - 131,500,193 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9131,373,636 - 131,500,197 (+)EnsemblGRCh38hg38GRCh38
GRCh379134,249,038 - 134,375,580 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369133,295,298 - 133,365,399 (+)NCBINCBI36Build 36hg18NCBI36
Build 349131,383,478 - 131,405,135NCBI
Celera9104,845,673 - 104,915,750 (+)NCBICelera
Cytogenetic Map9q34.13NCBI
HuRef9103,799,970 - 103,870,018 (+)NCBIHuRef
CHM1_19134,454,987 - 134,525,048 (+)NCBICHM1_1
T2T-CHM13v2.09143,583,138 - 143,713,087 (+)NCBIT2T-CHM13v2.0
Prrc2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8335,831,017 - 35,916,854 (+)NCBIGRCr8
mRatBN7.2315,433,357 - 15,519,105 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl315,465,294 - 15,519,104 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx318,534,559 - 18,588,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0327,119,554 - 27,173,467 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0325,370,110 - 25,423,957 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0311,165,687 - 11,252,401 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl311,198,401 - 11,248,558 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0316,516,495 - 16,601,271 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4311,291,980 - 11,347,131 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera310,209,828 - 10,263,975 (+)NCBICelera
Cytogenetic Map3p12NCBI
Prrc2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555131,138,292 - 1,183,665 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555131,137,099 - 1,187,724 (+)NCBIChiLan1.0ChiLan1.0
PRRC2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2117,855,444 - 7,983,901 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan197,857,780 - 7,986,243 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09102,516,585 - 102,622,588 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19131,138,102 - 131,262,898 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9131,193,641 - 131,262,894 (+)Ensemblpanpan1.1panPan2
PRRC2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1952,642,916 - 52,702,203 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl952,528,970 - 52,702,203 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha951,905,994 - 51,993,363 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0953,541,288 - 53,629,078 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl953,536,931 - 53,629,425 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1952,319,084 - 52,406,351 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0952,638,033 - 52,725,825 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0952,732,544 - 52,820,102 (-)NCBIUU_Cfam_GSD_1.0
Prrc2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947198,402,512 - 198,480,665 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648718,196,751 - 18,245,266 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648718,196,673 - 18,247,725 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRRC2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1271,336,818 - 271,430,916 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11271,336,780 - 271,430,936 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21305,377,250 - 305,439,305 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PRRC2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1126,643,975 - 6,767,834 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl126,646,394 - 6,713,044 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660798,786,670 - 8,915,385 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prrc2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247604,514,584 - 4,579,768 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247604,512,387 - 4,579,759 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Prrc2b
4377 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6590
Count of miRNA genes:860
Interacting mature miRNAs:1203
Transcripts:ENSMUST00000036691, ENSMUST00000069817, ENSMUST00000123270, ENSMUST00000128936, ENSMUST00000129626, ENSMUST00000132459, ENSMUST00000137551, ENSMUST00000140015, ENSMUST00000141053, ENSMUST00000142219, ENSMUST00000156313
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
12904008Cfq6_mconditioned fear QTL 6 (mouse)23120303544508204Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse

Markers in Region
AI173903  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38232,234,238 - 32,234,385UniSTSGRCm38
MGSCv37232,089,758 - 32,089,905UniSTSGRCm37
Celera231,938,575 - 31,938,722UniSTS
Cytogenetic Map2BUniSTS
Whitehead/MRC_RH2534.75UniSTS
RH125097  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38232,178,091 - 32,178,177UniSTSGRCm38
MGSCv37232,033,611 - 32,033,697UniSTSGRCm37
Celera231,882,433 - 31,882,519UniSTS
Cytogenetic Map2BUniSTS
UniSTS:234368  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38232,233,713 - 32,233,848UniSTSGRCm38
MGSCv37232,089,233 - 32,089,368UniSTSGRCm37
Celera231,938,050 - 31,938,185UniSTS
Cytogenetic Map2BUniSTS
UniSTS:237231  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38232,232,380 - 32,232,642UniSTSGRCm38
MGSCv37232,087,900 - 32,088,162UniSTSGRCm37
Celera231,936,717 - 31,936,979UniSTS
Cytogenetic Map2BUniSTS
D2Bwg0886e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38232,178,006 - 32,178,179UniSTSGRCm38
MGSCv37232,033,526 - 32,033,699UniSTSGRCm37
Celera231,882,348 - 31,882,521UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map2BUniSTS
cM Map224.0UniSTS
cM Map154.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001159634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006497953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK052511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL808027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC018489 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC055116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP753788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000036691   ⟹   ENSMUSP00000035734
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,041,094 - 32,124,549 (+)Ensembl
GRCm38.p6 Ensembl232,151,082 - 32,234,537 (+)Ensembl
Ensembl Acc Id: ENSMUST00000069817   ⟹   ENSMUSP00000064892
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,041,160 - 32,124,534 (+)Ensembl
GRCm38.p6 Ensembl232,151,148 - 32,234,522 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123270
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,096,395 - 32,109,670 (+)Ensembl
GRCm38.p6 Ensembl232,206,383 - 32,219,658 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128936   ⟹   ENSMUSP00000121664
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,106,090 - 32,109,624 (+)Ensembl
GRCm38.p6 Ensembl232,216,078 - 32,219,612 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129626
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,109,542 - 32,112,331 (+)Ensembl
GRCm38.p6 Ensembl232,219,530 - 32,222,319 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132459   ⟹   ENSMUSP00000116429
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,073,238 - 32,121,174 (+)Ensembl
GRCm38.p6 Ensembl232,183,226 - 32,231,162 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,107,292 - 32,111,379 (+)Ensembl
GRCm38.p6 Ensembl232,217,280 - 32,221,367 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,109,780 - 32,111,447 (+)Ensembl
GRCm38.p6 Ensembl232,219,768 - 32,221,435 (+)Ensembl
Ensembl Acc Id: ENSMUST00000142219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,107,224 - 32,109,168 (+)Ensembl
GRCm38.p6 Ensembl232,217,212 - 32,219,156 (+)Ensembl
Ensembl Acc Id: ENSMUST00000156313   ⟹   ENSMUSP00000114994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,102,210 - 32,109,329 (+)Ensembl
GRCm38.p6 Ensembl232,212,198 - 32,219,317 (+)Ensembl
RefSeq Acc Id: NM_001159634   ⟹   NP_001153106
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,041,160 - 32,124,549 (+)NCBI
GRCm38232,151,148 - 32,234,537 (+)ENTREZGENE
MGSCv37232,006,668 - 32,090,057 (+)RGD
Celera231,855,341 - 31,938,874 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_172661   ⟹   NP_766249
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,041,160 - 32,124,549 (+)NCBI
GRCm38232,151,148 - 32,234,537 (+)ENTREZGENE
MGSCv37232,006,668 - 32,090,057 (+)RGD
Celera231,855,341 - 31,938,874 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006497948   ⟹   XP_006498011
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,041,002 - 32,124,549 (+)NCBI
GRCm38232,151,031 - 32,234,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497949   ⟹   XP_006498012
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,041,002 - 32,124,526 (+)NCBI
GRCm38232,151,031 - 32,232,781 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497950   ⟹   XP_006498013
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,041,002 - 32,124,526 (+)NCBI
GRCm38232,151,031 - 32,232,763 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497951   ⟹   XP_006498014
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,041,002 - 32,124,549 (+)NCBI
GRCm38232,151,031 - 32,234,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497952   ⟹   XP_006498015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,041,002 - 32,124,526 (+)NCBI
GRCm38232,151,031 - 32,232,817 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006497953   ⟹   XP_006498016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,041,002 - 32,124,526 (+)NCBI
GRCm38232,151,031 - 32,232,781 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249897   ⟹   XP_030105757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,041,324 - 32,124,526 (+)NCBI
GRCm38232,151,307 - 32,232,781 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249906   ⟹   XP_030105766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,041,002 - 32,124,549 (+)NCBI
GRCm38232,151,031 - 32,234,537 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249910   ⟹   XP_030105770
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,041,002 - 32,124,526 (+)NCBI
GRCm38232,151,031 - 32,232,817 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030249911   ⟹   XP_030105771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,041,002 - 32,124,526 (+)NCBI
GRCm38232,151,031 - 32,232,763 (+)NCBI
Sequence:
RefSeq Acc Id: NP_766249   ⟸   NM_172661
- Peptide Label: isoform 2
- UniProtKB: Q8C755 (UniProtKB/Swiss-Prot),   Q7TPM1 (UniProtKB/Swiss-Prot),   A2AN31 (UniProtKB/Swiss-Prot),   F7AYW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153106   ⟸   NM_001159634
- Peptide Label: isoform 1
- UniProtKB: F8WHT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006498011   ⟸   XM_006497948
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006498014   ⟸   XM_006497951
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006498012   ⟸   XM_006497949
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006498013   ⟸   XM_006497950
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006498015   ⟸   XM_006497952
- Peptide Label: isoform X6
- UniProtKB: F7AYW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006498016   ⟸   XM_006497953
- Peptide Label: isoform X7
- UniProtKB: F7AYW2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030105766   ⟸   XM_030249906
- Peptide Label: isoform X5
RefSeq Acc Id: XP_030105770   ⟸   XM_030249910
- Peptide Label: isoform X8
- UniProtKB: F7AYW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105771   ⟸   XM_030249911
- Peptide Label: isoform X9
- UniProtKB: F7AYW2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030105757   ⟸   XM_030249897
- Peptide Label: isoform X1
Ensembl Acc Id: ENSMUSP00000116429   ⟸   ENSMUST00000132459
Ensembl Acc Id: ENSMUSP00000035734   ⟸   ENSMUST00000036691
Ensembl Acc Id: ENSMUSP00000064892   ⟸   ENSMUST00000069817
Ensembl Acc Id: ENSMUSP00000121664   ⟸   ENSMUST00000128936
Ensembl Acc Id: ENSMUSP00000114994   ⟸   ENSMUST00000156313
Protein Domains
BAT2 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7TPM1-F1-model_v2 AlphaFold Q7TPM1 1-1486 view protein structure

Promoters
RGD ID:6831819
Promoter ID:MM_KWN:28665
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:UC008JEO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36232,037,911 - 32,038,562 (+)MPROMDB
RGD ID:6830869
Promoter ID:MM_KWN:28666
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:OTTMUST00000031115
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36232,061,461 - 32,062,312 (+)MPROMDB
RGD ID:6830872
Promoter ID:MM_KWN:28667
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:OTTMUST00000031114
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36232,063,461 - 32,064,662 (+)MPROMDB
RGD ID:6830871
Promoter ID:MM_KWN:28668
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:OTTMUST00000031116
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36232,067,331 - 32,067,962 (+)MPROMDB
RGD ID:6830881
Promoter ID:MM_KWN:28669
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung,   Spleen
Transcripts:OTTMUST00000031117
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36232,070,716 - 32,071,362 (+)MPROMDB
RGD ID:6830882
Promoter ID:MM_KWN:28670
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:OTTMUST00000031118,   OTTMUST00000031119
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36232,072,586 - 32,073,086 (+)MPROMDB
RGD ID:6830885
Promoter ID:MM_KWN:28671
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:OTTMUST00000031120,   OTTMUST00000031121
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36232,074,411 - 32,075,312 (+)MPROMDB
RGD ID:6876974
Promoter ID:EPDNEW_M1938
Type:initiation region
Name:Prrc2b_1
Description:Mus musculus proline-rich coiled-coil 2B , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1939  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38232,151,129 - 32,151,189EPDNEW
RGD ID:6876976
Promoter ID:EPDNEW_M1939
Type:initiation region
Name:Prrc2b_2
Description:Mus musculus proline-rich coiled-coil 2B , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1938  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38232,183,032 - 32,183,092EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923304 AgrOrtholog
Ensembl Genes ENSMUSG00000039262 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000036691 ENTREZGENE
  ENSMUST00000036691.14 UniProtKB/Swiss-Prot
  ENSMUST00000069817 ENTREZGENE
  ENSMUST00000069817.15 UniProtKB/TrEMBL
  ENSMUST00000128936.2 UniProtKB/TrEMBL
  ENSMUST00000132459 ENTREZGENE
  ENSMUST00000132459.8 UniProtKB/TrEMBL
  ENSMUST00000156313.8 UniProtKB/TrEMBL
InterPro BAT2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRRC2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:227723 UniProtKB/Swiss-Prot
MGD MGI:1923304 ENTREZGENE
NCBI Gene Prrc2b ENTREZGENE
PANTHER PROTEIN PRRC2B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14038 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam BAT2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Prrc2b PhenoGen
UniProt A2AN31 ENTREZGENE
  F6Q3E1_MOUSE UniProtKB/TrEMBL
  F6V431_MOUSE UniProtKB/TrEMBL
  F7AYW2 ENTREZGENE, UniProtKB/TrEMBL
  F8WHT3 ENTREZGENE, UniProtKB/TrEMBL
  PRC2B_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q80TY7_MOUSE UniProtKB/TrEMBL
  Q8C755 ENTREZGENE
UniProt Secondary A2AN31 UniProtKB/Swiss-Prot
  Q8C755 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Prrc2b  proline-rich coiled-coil 2B  5830434P21Rik  RIKEN cDNA 5830434P21 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 5830434P21Rik  RIKEN cDNA 5830434P21 gene  Prrc2b  proline-rich coiled-coil 2B  Symbol and/or name change 5135510 APPROVED
2024-08-21 Prrc2b  proline-rich coiled-coil 2B  5830434P21Rik  RIKEN cDNA 5830434P21 gene  Symbol and/or name change 5135510 APPROVED
2024-08-21 5830434P21Rik  RIKEN cDNA 5830434P21 gene  Prrc2b  proline-rich coiled-coil 2B  Symbol and/or name change 5135510 APPROVED
2011-07-27 Prrc2b  proline-rich coiled-coil 2B  Bat2l  HLA-B associated transcript 2-like  Symbol and/or name change 5135510 APPROVED