Glt1d1 (glycosyltransferase 1 domain containing 1) - Rat Genome Database

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Gene: Glt1d1 (glycosyltransferase 1 domain containing 1) Mus musculus
Analyze
Symbol: Glt1d1
Name: glycosyltransferase 1 domain containing 1
RGD ID: 1312598
MGI Page MGI
Description: Predicted to enable glycosyltransferase activity. Predicted to be located in cytosol. Orthologous to human GLT1D1 (glycosyltransferase 1 domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5730455A04Rik; glycosyltransferase 1 domain-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395127,709,134 - 127,786,438 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5127,709,326 - 127,786,438 (+)EnsemblGRCm39 Ensembl
GRCm385127,632,070 - 127,709,374 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5127,632,262 - 127,709,374 (+)EnsemblGRCm38mm10GRCm38
MGSCv375128,112,632 - 128,187,890 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365127,921,465 - 127,981,105 (+)NCBIMGSCv36mm8
Celera5124,662,449 - 124,746,203 (+)NCBICelera
Cytogenetic Map5G1.2- G1.3NCBI
cM Map566.06NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068  
PMID:21565611  


Genomics

Comparative Map Data
Glt1d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395127,709,134 - 127,786,438 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5127,709,326 - 127,786,438 (+)EnsemblGRCm39 Ensembl
GRCm385127,632,070 - 127,709,374 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5127,632,262 - 127,709,374 (+)EnsemblGRCm38mm10GRCm38
MGSCv375128,112,632 - 128,187,890 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365127,921,465 - 127,981,105 (+)NCBIMGSCv36mm8
Celera5124,662,449 - 124,746,203 (+)NCBICelera
Cytogenetic Map5G1.2- G1.3NCBI
cM Map566.06NCBI
GLT1D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812128,853,478 - 128,984,968 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12128,853,427 - 128,984,968 (+)EnsemblGRCh38hg38GRCh38
GRCh3712129,338,023 - 129,469,513 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612127,904,034 - 128,035,462 (+)NCBINCBI36Build 36hg18NCBI36
Celera12128,951,908 - 129,083,008 (+)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12126,322,934 - 126,454,148 (+)NCBIHuRef
CHM1_112129,157,936 - 129,290,187 (+)NCBICHM1_1
T2T-CHM13v2.012128,885,134 - 129,016,644 (+)NCBIT2T-CHM13v2.0
Glt1d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81234,611,942 - 34,685,591 (-)NCBIGRCr8
mRatBN7.21228,975,984 - 29,049,707 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1228,975,988 - 29,049,695 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01232,666,664 - 32,749,617 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1232,666,635 - 32,740,732 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01234,574,232 - 34,647,770 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41230,026,320 - 30,098,182 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11229,889,707 - 29,961,640 (-)NCBI
Celera1230,662,519 - 30,744,974 (-)NCBICelera
Cytogenetic Map12q14NCBI
Glt1d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554822,209,033 - 2,274,365 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554822,208,059 - 2,283,298 (-)NCBIChiLan1.0ChiLan1.0
GLT1D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210136,897,889 - 137,145,065 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112136,894,416 - 137,141,521 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012126,450,553 - 126,625,634 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112130,672,241 - 130,830,487 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12130,672,240 - 130,830,487 (+)Ensemblpanpan1.1panPan2
GLT1D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1262,707,243 - 2,794,708 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl262,707,272 - 2,796,739 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha262,910,215 - 2,997,437 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0262,959,321 - 3,046,992 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl262,959,332 - 3,057,170 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1262,891,460 - 2,978,623 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0262,989,810 - 3,076,768 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0262,899,431 - 2,986,662 (-)NCBIUU_Cfam_GSD_1.0
Glt1d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118124,135,031 - 124,197,210 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936660523,870 - 584,062 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936660515,961 - 586,049 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLT1D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1425,998,644 - 26,109,033 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11425,998,634 - 26,109,433 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21427,626,139 - 27,684,059 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GLT1D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111124,204,292 - 124,354,942 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11124,249,340 - 124,353,079 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037120,939,801 - 121,090,683 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glt1d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474726,288,775 - 26,363,826 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474726,288,756 - 26,363,826 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Glt1d1
2802 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1007
Count of miRNA genes:586
Interacting mature miRNAs:722
Transcripts:ENSMUST00000118139, ENSMUST00000134529, ENSMUST00000137157
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109167240143167381Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109167240143167381Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109238624139118905Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109439348143439459Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113320385138555455Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5114021753129632606Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115156883149157015Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115156883149157015Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118948964151758149Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119945037141700466Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119945037149347326Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121455402151758149Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121555236151758149Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124700335151758149Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125133457151758149Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125178229141700466Mouse

Markers in Region
D5Mit215  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385127,674,588 - 127,674,706UniSTSGRCm38
MGSCv375128,154,958 - 128,155,076UniSTSGRCm37
Celera5124,712,846 - 124,712,976UniSTS
Celera5124,701,136 - 124,701,254UniSTS
Cytogenetic Map5G1.2UniSTS
cM Map571.0UniSTS
Whitehead Genetic561.2UniSTS
Whitehead/MRC_RH51557.21UniSTS
D5Dcr11  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385127,674,601 - 127,674,696UniSTSGRCm38
MGSCv375128,154,971 - 128,155,066UniSTSGRCm37
Celera5124,712,859 - 124,712,966UniSTS
Celera5124,701,149 - 124,701,244UniSTS
Cytogenetic Map5G1.2UniSTS
cM Map5 UniSTS
D5Mit383  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385127,680,178 - 127,680,281UniSTSGRCm38
MGSCv375128,160,548 - 128,160,651UniSTSGRCm37
Cytogenetic Map5G1.2UniSTS
cM Map572.0UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000118139   ⟹   ENSMUSP00000113864
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,709,326 - 127,786,438 (+)Ensembl
GRCm38.p6 Ensembl5127,632,262 - 127,709,374 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,734,097 - 127,766,935 (+)Ensembl
GRCm38.p6 Ensembl5127,657,033 - 127,689,871 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5127,709,326 - 127,768,966 (+)Ensembl
GRCm38.p6 Ensembl5127,632,262 - 127,691,902 (+)Ensembl
RefSeq Acc Id: NM_177005   ⟹   NP_795979
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,709,326 - 127,784,584 (+)NCBI
GRCm385127,632,262 - 127,707,520 (+)NCBI
MGSCv375128,112,632 - 128,187,890 (+)RGD
Celera5124,662,449 - 124,746,203 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006504309   ⟹   XP_006504372
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,709,134 - 127,771,375 (+)NCBI
GRCm385127,632,070 - 127,694,311 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504310   ⟹   XP_006504373
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,709,197 - 127,786,438 (+)NCBI
GRCm385127,632,133 - 127,709,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006504311   ⟹   XP_006504374
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,709,200 - 127,786,438 (+)NCBI
GRCm385127,632,136 - 127,709,374 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011240843   ⟹   XP_011239145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,709,134 - 127,766,944 (+)NCBI
GRCm385127,632,070 - 127,689,880 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254573   ⟹   XP_030110433
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,709,143 - 127,786,438 (+)NCBI
GRCm385127,632,079 - 127,709,374 (+)NCBI
Sequence:
RefSeq Acc Id: XR_377057
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395127,709,194 - 127,771,375 (+)NCBI
GRCm385127,632,130 - 127,694,311 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_795979   ⟸   NM_177005
- Peptide Label: precursor
- UniProtKB: Q8BWP4 (UniProtKB/Swiss-Prot),   A4FUP9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006504372   ⟸   XM_006504309
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006504373   ⟸   XM_006504310
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006504374   ⟸   XM_006504311
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011239145   ⟸   XM_011240843
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030110433   ⟸   XM_030254573
- Peptide Label: isoform X4
RefSeq Acc Id: ENSMUSP00000113864   ⟸   ENSMUST00000118139

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A4FUP9-F1-model_v2 AlphaFold A4FUP9 1-346 view protein structure

Promoters
RGD ID:6888154
Promoter ID:EPDNEW_M7528
Type:multiple initiation site
Name:Glt1d1_1
Description:Mus musculus glycosyltransferase 1 domain containing 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385127,632,262 - 127,632,322EPDNEW
RGD ID:6837587
Promoter ID:MM_KWN:44177
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:ENSMUST00000094293,   ENSMUST00000118139
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365128,112,691 - 128,113,191 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442755 AgrOrtholog
Ensembl Genes ENSMUSG00000049971 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000118139 ENTREZGENE
  ENSMUST00000118139.3 UniProtKB/Swiss-Prot
Gene3D-CATH Glycogen Phosphorylase B UniProtKB/Swiss-Prot
InterPro Glyco_trans_1 UniProtKB/Swiss-Prot
KEGG Report mmu:319804 UniProtKB/Swiss-Prot
MGD MGI:2442755 ENTREZGENE
NCBI Gene 319804 ENTREZGENE
PANTHER GLYCOSYLTRANSFERASE 1 DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR46660 UniProtKB/Swiss-Prot
Pfam Glycos_transf_1 UniProtKB/Swiss-Prot
PhenoGen Glt1d1 PhenoGen
Superfamily-SCOP UDP-Glycosyltransferase/glycogen phosphorylase UniProtKB/Swiss-Prot
UniProt A4FUP9 ENTREZGENE, UniProtKB/Swiss-Prot
  Q8BWP4 ENTREZGENE
UniProt Secondary Q8BWP4 UniProtKB/Swiss-Prot