Atad2 (ATPase family, AAA domain containing 2) - Rat Genome Database

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Gene: Atad2 (ATPase family, AAA domain containing 2) Mus musculus
Analyze
Symbol: Atad2
Name: ATPase family, AAA domain containing 2
RGD ID: 1312523
MGI Page MGI
Description: Predicted to enable ATP hydrolysis activity; chromatin binding activity; and histone binding activity. Predicted to be involved in chromatin remodeling and positive regulation of DNA-templated transcription. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in several structures, including brain ventricular layer; early conceptus; genitourinary system; salivary gland; and spleen. Orthologous to human ATAD2 (ATPase family AAA domain containing 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2610509G12Rik; ATPase family AAA domain-containing protein 2; MGC38189
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391557,957,440 - 57,998,516 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1557,957,440 - 57,998,478 (-)EnsemblGRCm39 Ensembl
GRCm381558,094,044 - 58,135,525 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1558,094,044 - 58,135,082 (-)EnsemblGRCm38mm10GRCm38
MGSCv371557,925,602 - 57,966,637 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361557,924,128 - 57,965,152 (-)NCBIMGSCv36mm8
Celera1559,614,067 - 59,655,014 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1524.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,1-dichloroethene  (EXP)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3-methylcholanthrene  (EXP)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (EXP)
acetamide  (ISO)
adefovir pivoxil  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cefaloridine  (ISO)
CGP 52608  (ISO)
chloroacetaldehyde  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (EXP,ISO)
cidofovir anhydrous  (ISO)
cisplatin  (EXP,ISO)
clodronic acid  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
ethanol  (EXP)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glycerol 2-phosphate  (ISO)
indole-3-methanol  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
ketoconazole  (ISO)
L-ascorbic acid  (ISO)
lidocaine  (ISO)
lucanthone  (ISO)
maneb  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N,N-diethyl-m-toluamide  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nickel atom  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (ISO)
paraquat  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (ISO)
phenobarbital  (EXP)
phytoestrogen  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
progesterone  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
Senkirkine  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
succimer  (EXP)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP)
thapsigargin  (EXP,ISO)
thioacetamide  (ISO)
topotecan  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
tungsten  (EXP)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15618518   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18973680   PMID:20412781  
PMID:20581866   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23038103   PMID:24457600   PMID:24805933   PMID:31747529   PMID:32098917   PMID:34580178   PMID:35085891  


Genomics

Comparative Map Data
Atad2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391557,957,440 - 57,998,516 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1557,957,440 - 57,998,478 (-)EnsemblGRCm39 Ensembl
GRCm381558,094,044 - 58,135,525 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1558,094,044 - 58,135,082 (-)EnsemblGRCm38mm10GRCm38
MGSCv371557,925,602 - 57,966,637 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361557,924,128 - 57,965,152 (-)NCBIMGSCv36mm8
Celera1559,614,067 - 59,655,014 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1524.32NCBI
ATAD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388123,319,850 - 123,416,350 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8123,319,850 - 123,416,350 (-)EnsemblGRCh38hg38GRCh38
GRCh378124,332,090 - 124,408,687 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368124,401,922 - 124,477,868 (-)NCBINCBI36Build 36hg18NCBI36
Build 348124,401,921 - 124,477,868NCBI
Celera8120,520,748 - 120,596,364 (-)NCBICelera
Cytogenetic Map8q24.13NCBI
HuRef8119,657,854 - 119,734,371 (-)NCBIHuRef
CHM1_18124,372,552 - 124,449,135 (-)NCBICHM1_1
T2T-CHM13v2.08124,450,947 - 124,547,457 (-)NCBIT2T-CHM13v2.0
Atad2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8791,523,626 - 91,566,238 (-)NCBIGRCr8
mRatBN7.2789,634,123 - 89,676,738 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl789,634,123 - 89,676,738 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx791,510,806 - 91,552,656 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0793,712,080 - 93,753,926 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0793,529,908 - 93,571,726 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0797,984,754 - 98,027,379 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl797,984,862 - 98,026,052 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0798,589,668 - 98,631,755 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4794,808,296 - 94,851,986 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1794,822,723 - 94,886,549 (-)NCBI
Celera786,405,901 - 86,448,563 (-)NCBICelera
Cytogenetic Map7q33NCBI
Atad2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555402,166,636 - 2,227,360 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555402,166,708 - 2,228,077 (-)NCBIChiLan1.0ChiLan1.0
ATAD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27140,751,418 - 140,848,170 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18116,262,588 - 116,359,334 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08120,014,794 - 120,091,465 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18122,770,893 - 122,846,957 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8122,770,893 - 122,846,958 (-)Ensemblpanpan1.1panPan2
ATAD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11321,667,214 - 21,733,028 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1321,667,221 - 21,732,939 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1321,632,745 - 21,707,473 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01322,007,285 - 22,082,006 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1322,007,040 - 22,073,254 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11321,735,686 - 21,810,589 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01321,838,143 - 21,912,711 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01322,081,783 - 22,156,297 (-)NCBIUU_Cfam_GSD_1.0
Atad2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530316,560,734 - 16,617,531 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647023,986,967 - 24,043,082 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647023,986,895 - 24,043,609 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATAD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl416,012,561 - 16,082,638 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1416,012,278 - 16,082,343 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2416,755,859 - 16,823,919 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATAD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18117,894,362 - 117,977,699 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8117,895,112 - 117,977,167 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603922,235,801 - 22,339,390 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atad2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473531,570,451 - 31,636,552 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473531,570,336 - 31,637,253 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atad2
1487 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:372
Count of miRNA genes:284
Interacting mature miRNAs:306
Transcripts:ENSMUST00000038194
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301779Dpml_mdopamine loss (mouse)Not determined155100469476794493Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
27226777Tibl8_mtibia length 8, 5 week (mouse)15692948184584201Mouse
27226773Tibl16_mtibia length 16, 10 week (mouse)15692948175871849Mouse
1301406Egrd2_mearly growth rate (mouse)Not determined152631178060311880Mouse
4142252Tailaq4_mtail length adjusted QTL 4 (mouse)Not determined348969478601286Mouse
1357703Vtbt17_mvertebral trabecular bone trait 17 (mouse)Not determined154455331378553437Mouse
13504731Cath5_mcarotid atherosclerosis 5 (mouse)155478912988789129Mouse
27226755Feml22_mfemur length 22, 16 week (mouse)15762948159271849Mouse
1301006Hfib1_mhepatic fibrogenesis 1 (mouse)Not determined154730633481306479Mouse
27095936Ulnl4_mulna length 4, 5 week (mouse)155676339687684201Mouse
10755515Amzn3_manatomical modifier of Zfp423 3 (mouse)154638964680389845Mouse
26884412Bzwq10_mbi-zygomatic width QTL 10, 10 week (mouse)15612948171471849Mouse
1301557Bbaa22_mB.burgdorferi-associated arthritis 22 (mouse)Not determined152446257258462805Mouse
1301429Pcir3_mperiosteal circumference 3 (mouse)Not determined154846536282465496Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
1357756Alaa4_malopecia areata 4 (mouse)Not determined154638964680389845Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1301433Rapop5_mradiation-induced apoptosis 5 (mouse)Not determined15927302279474762Mouse
27226800Scvln20_msacral vertebrae length 2, 16 week (mouse)152660008666371849Mouse
26884392Humsd8_mhumerus midshaft diameter 8, 16 week (mouse)152930014676084200Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
1300772Bglq16_mbody growth late QTL 16 (mouse)Not determined152631178060311880Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884387Skwq8_mskull length QTL 8, 10 week (mouse)15612948168271849Mouse
27226786Feml11_mfemur length 11, 5 week (mouse)15612948175871849Mouse
10412067Pain2_mpain 2 (mouse)Not determined155164533985645626Mouse
4141952W3q7_mweight 3 weeks QTL 7 (mouse)Not determined348969478601286Mouse
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
27226717Tibw4_mtibia width 4, proximal, 10 week (mouse)15612948178684200Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
4142459Lfnq3_mlung function QTL 3 (mouse)Not determined4017702272372580Mouse
1300949Lore5_mloss of righting induced by ethanol 5 (mouse)Not determined154001944158022297Mouse
1357661Eae2b_msusceptibility to experimental allergic encephalomyelitis 2b (mouse)Not determined155100469464944308Mouse
4142198Hbtq_mhabituation QTL (mouse)Not determined155116070885160833Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
4142448Tailq6_mtail length QTL 6 (mouse)Not determined348969478601286Mouse
1357659Epfpq4_mepididymal fat percentage QTL 4 (mouse)Not determined15348969478601286Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1301568Tria2_mT-cell receptor induced activation 2 (mouse)Not determined154485914178859281Mouse
1302080Szs13_mseizure susceptibility 13 (mouse)Not determined155168583285694449Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1301450Bpq6_mblood pressure QTL 6 (mouse)Not determined152828264662282739Mouse
26884417Bzwq4_mbi-zygomatic width QTL 4, 5 week (mouse)15612948172471849Mouse
1357512Bsbob5_mBSB obesity 5 (mouse)Not determined152828264662282739Mouse
10045637Heal27_mwound healing/regeneration 29 (mouse)Not determined155141836185418511Mouse
4141409Radsvq1_mradiation sensitivity QTL 1 (mouse)Not determined2548497859484978Mouse
1357514Mbis3_mMycobacterium bovis-induced systemic lupus erythematosus 3 (mouse)Not determined162631178060311880Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
26884420Cvht6_mcranial vault height 6, 10 week (mouse)154556339669171849Mouse
1301324Cdif_mcolor difference (mouse)Not determined153597590669976019Mouse
1301580Hrq2_mheart rate quantitative locus 2 (mouse)Not determined153910039573100593Mouse
1301708Cocrb14_mcocaine related behavior 14 (mouse)Not determined155180651585806651Mouse
27095932Ulnl11_mulna length 11, 16 week (mouse)15612948176384200Mouse
1357559Scfq2_msubcutaneous fat pad weight QTL 2 (mouse)Not determined15348969478601286Mouse
10401902Sicd2_mseizure-induced cell death 2 (mouse)Not determined15347438971197538Mouse
27226734Tibmd5_mtibia midshaft diameter 5, 10 week (mouse)15612948186684201Mouse
1300578Cd8ts3_mCD8 T cell subset 3 (mouse)Not determined153400469468004804Mouse
1301345Bgeq14_mbody growth early QTL 14 (mouse)Not determined152631178060311880Mouse
1300967Bdt6_mbone density traits 6 (mouse)Not determined152529580659295928Mouse
27226729Tibmd2_mtibia midshaft diameter 2, 5 week (mouse)153800024486684201Mouse
1301860Gct3_mgranulosa cell tumorigenesis 3 (mouse)Not determined154740959681409691Mouse
27226721Tibw8_mtibia width 8, proximal, 16 week (mouse)15692948175871849Mouse
26884452Sklq17_mskull length QTL 17, 16 week (mouse)153020014657963396Mouse

Markers in Region
UniSTS:492062  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381558,121,569 - 58,121,987UniSTSGRCm38
MGSCv371557,953,124 - 57,953,542UniSTSGRCm37
Celera1559,641,500 - 59,641,918UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map15D1UniSTS
UniSTS:237298  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381558,102,765 - 58,102,988UniSTSGRCm38
MGSCv371557,934,320 - 57,934,543UniSTSGRCm37
Celera1559,622,646 - 59,622,869UniSTS
Cytogenetic Map15D2UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
Atad2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15D2UniSTS
Atad2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15D2UniSTS
cM Map1524.32UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001404762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_027435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_175863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036159583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK037651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK134319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000038194   ⟹   ENSMUSP00000043691
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1557,957,442 - 57,998,478 (-)Ensembl
GRCm38.p6 Ensembl1558,094,046 - 58,135,082 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1557,971,651 - 57,975,554 (-)Ensembl
GRCm38.p6 Ensembl1558,108,255 - 58,112,158 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226526
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1557,966,150 - 57,974,739 (-)Ensembl
GRCm38.p6 Ensembl1558,102,754 - 58,111,343 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226582
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1557,990,361 - 57,992,407 (-)Ensembl
GRCm38.p6 Ensembl1558,126,965 - 58,129,011 (-)Ensembl
RefSeq Acc Id: ENSMUST00000226649
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1557,957,440 - 57,962,172 (-)Ensembl
GRCm38.p6 Ensembl1558,094,044 - 58,098,776 (-)Ensembl
RefSeq Acc Id: ENSMUST00000227134
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1557,979,544 - 57,982,207 (-)Ensembl
GRCm38.p6 Ensembl1558,116,148 - 58,118,811 (-)Ensembl
RefSeq Acc Id: ENSMUST00000227171
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1557,994,548 - 57,996,688 (-)Ensembl
GRCm38.p6 Ensembl1558,131,152 - 58,133,292 (-)Ensembl
RefSeq Acc Id: ENSMUST00000228783   ⟹   ENSMUSP00000153936
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1557,958,800 - 57,982,711 (-)Ensembl
GRCm38.p6 Ensembl1558,095,404 - 58,119,315 (-)Ensembl
RefSeq Acc Id: NM_001404762   ⟹   NP_001391691
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391557,957,440 - 57,998,465 (-)NCBI
RefSeq Acc Id: NM_001404764   ⟹   NP_001391693
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391557,957,440 - 57,998,465 (-)NCBI
RefSeq Acc Id: NM_001404765   ⟹   NP_001391694
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391557,957,440 - 57,982,748 (-)NCBI
RefSeq Acc Id: NM_001404766   ⟹   NP_001391695
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391557,957,440 - 57,975,532 (-)NCBI
RefSeq Acc Id: NM_027435   ⟹   NP_081711
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391557,957,440 - 57,998,465 (-)NCBI
GRCm381558,094,047 - 58,135,082 (-)NCBI
MGSCv371557,925,602 - 57,966,637 (-)RGD
Celera1559,614,067 - 59,655,014 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_175863
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391557,957,440 - 57,998,465 (-)NCBI
RefSeq Acc Id: XM_036159583   ⟹   XP_036015476
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391557,957,440 - 57,998,516 (-)NCBI
Sequence:
RefSeq Acc Id: NP_081711   ⟸   NM_027435
- Peptide Label: isoform 1
- UniProtKB: G3X963 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000043691   ⟸   ENSMUST00000038194
RefSeq Acc Id: ENSMUSP00000153936   ⟸   ENSMUST00000228783
RefSeq Acc Id: XP_036015476   ⟸   XM_036159583
- Peptide Label: isoform X1
RefSeq Acc Id: NP_001391691   ⟸   NM_001404762
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001391693   ⟸   NM_001404764
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001391694   ⟸   NM_001404765
- Peptide Label: isoform 4
- UniProtKB: Q8CDM1 (UniProtKB/Swiss-Prot),   Q3UYW6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001391695   ⟸   NM_001404766
- Peptide Label: isoform 5
Protein Domains
Bromo

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CDM1-F1-model_v2 AlphaFold Q8CDM1 1-1040 view protein structure

Promoters
RGD ID:6825789
Promoter ID:MM_KWN:18489
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour
Transcripts:UC007VTG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361557,943,291 - 57,944,692 (-)MPROMDB
RGD ID:6825788
Promoter ID:MM_KWN:18492
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:NM_027435,   UC007VTH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361557,966,366 - 57,966,866 (-)MPROMDB
RGD ID:8683784
Promoter ID:EPDNEW_M19923
Type:initiation region
Name:Atad2_1
Description:Mus musculus ATPase family, AAA domain containing 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381558,135,062 - 58,135,122EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917722 AgrOrtholog
Ensembl Genes ENSMUSG00000022360 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038194 ENTREZGENE
  ENSMUST00000038194.5 UniProtKB/TrEMBL
  ENSMUST00000228783 ENTREZGENE
  ENSMUST00000228783.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.8.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.20.920.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATAD2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bromodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bromodomain-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:70472 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1917722 ENTREZGENE
NCBI Gene 70472 ENTREZGENE
PANTHER PTHR23069 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23069:SF4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AAA_lid_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Bromodomain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Atad2 PhenoGen
PRINTS BROMODOMAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BROMODOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BROMO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47370 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ATAD2_MOUSE UniProtKB/Swiss-Prot
  G3X963 ENTREZGENE, UniProtKB/TrEMBL
  Q3UYW6 ENTREZGENE
  Q6IQY4_MOUSE UniProtKB/TrEMBL
  Q8CDM1 ENTREZGENE
  Q8K282_MOUSE UniProtKB/TrEMBL
  Q9CSS4_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UYW6 UniProtKB/Swiss-Prot