Fchsd2 (FCH and double SH3 domains 2) - Rat Genome Database

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Gene: Fchsd2 (FCH and double SH3 domains 2) Mus musculus
Analyze
Symbol: Fchsd2
Name: FCH and double SH3 domains 2
RGD ID: 1312476
MGI Page MGI
Description: Predicted to enable phosphatidylinositol-3,4,5-trisphosphate binding activity and phosphatidylinositol-3,4-bisphosphate binding activity. Involved in membrane organization and positive regulation of actin filament polymerization. Located in stereocilium shaft. Is expressed in tail dorsal root ganglion and trigeminal ganglion. Orthologous to human FCHSD2 (FCH and double SH3 domains 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BC034086; F-BAR and double SH3 domains protein 2; FCH and double SH3 domains protein 2; mKIAA0769; NWK1; R74866; SH3 multiple domains 3; SH3 multiple domains protein 3; Sh3md; Sh3md3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397100,757,836 - 100,933,613 (+)NCBIGRCm39mm39
GRCm39 Ensembl7100,742,070 - 100,933,612 (+)Ensembl
GRCm387101,108,499 - 101,284,405 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7101,092,863 - 101,284,405 (+)EnsemblGRCm38mm10GRCm38
MGSCv377108,257,289 - 108,432,919 (+)NCBIGRCm37mm9NCBIm37
MGSCv367100,982,900 - 101,158,492 (+)NCBImm8
Celera7101,462,084 - 101,640,492 (+)NCBICelera
Cytogenetic Map7E2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15067381   PMID:15489334   PMID:16107646   PMID:16141072  
PMID:16141073   PMID:21267068   PMID:21873635   PMID:23437151   PMID:23761074   PMID:27889896  


Genomics

Comparative Map Data
Fchsd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397100,757,836 - 100,933,613 (+)NCBIGRCm39mm39
GRCm39 Ensembl7100,742,070 - 100,933,612 (+)Ensembl
GRCm387101,108,499 - 101,284,405 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7101,092,863 - 101,284,405 (+)EnsemblGRCm38mm10GRCm38
MGSCv377108,257,289 - 108,432,919 (+)NCBIGRCm37mm9NCBIm37
MGSCv367100,982,900 - 101,158,492 (+)NCBImm8
Celera7101,462,084 - 101,640,492 (+)NCBICelera
Cytogenetic Map7E2NCBI
FCHSD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381172,836,745 - 73,142,318 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1172,836,745 - 73,142,318 (-)EnsemblGRCh38hg38GRCh38
GRCh371172,547,790 - 72,853,363 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361172,225,439 - 72,530,739 (-)NCBINCBI36hg18NCBI36
Build 341172,225,438 - 72,530,739NCBI
Celera1169,852,315 - 70,157,746 (-)NCBI
Cytogenetic Map11q13.4NCBI
HuRef1168,842,883 - 69,148,230 (-)NCBIHuRef
CHM1_11172,431,560 - 72,736,921 (-)NCBICHM1_1
T2T-CHM13v2.01172,764,983 - 73,070,534 (-)NCBI
Fchsd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21155,444,471 - 155,685,539 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1155,444,460 - 155,685,539 (+)Ensembl
Rnor_6.01166,140,025 - 166,395,915 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1166,125,474 - 166,395,915 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01172,337,554 - 172,460,399 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01172,505,865 - 172,585,548 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41158,548,830 - 158,782,422 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11158,626,026 - 158,861,250 (+)NCBI
Celera1153,543,242 - 153,768,063 (+)NCBICelera
Cytogenetic Map1q32NCBI
Fchsd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541418,343,832 - 18,597,675 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541418,343,832 - 18,597,675 (+)NCBIChiLan1.0ChiLan1.0
FCHSD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11171,138,187 - 71,440,818 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01167,915,796 - 68,219,482 (-)NCBIMhudiblu_PPA_v0panPan3
FCHSD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12125,082,864 - 25,399,754 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2125,072,161 - 25,397,717 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2124,836,372 - 25,169,938 (+)NCBI
ROS_Cfam_1.02125,289,701 - 25,607,172 (+)NCBI
ROS_Cfam_1.0 Ensembl2125,289,677 - 25,607,159 (+)Ensembl
UMICH_Zoey_3.12125,072,096 - 25,399,594 (+)NCBI
UNSW_CanFamBas_1.02125,274,840 - 25,602,887 (+)NCBI
UU_Cfam_GSD_1.02125,188,533 - 25,516,358 (+)NCBI
Fchsd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494760,489,529 - 60,744,762 (-)NCBI
SpeTri2.0NW_0049364982,089,069 - 2,344,007 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FCHSD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl97,366,521 - 7,619,926 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.197,366,516 - 7,619,960 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.298,128,484 - 8,362,239 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FCHSD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1164,073,563 - 64,383,695 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl164,075,109 - 64,383,589 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604361,501,289 - 61,808,431 (+)NCBIVero_WHO_p1.0
Fchsd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248173,819,178 - 4,135,044 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248173,819,124 - 4,134,757 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
43.MMHAP12FRG10.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387101,155,036 - 101,155,201UniSTSGRCm38
MGSCv377108,303,550 - 108,303,715UniSTSGRCm37
Celera7101,508,362 - 101,508,520UniSTS
Cytogenetic Map7E3UniSTS
Whitehead_YAC7 UniSTS
D7Mit126  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387101,201,127 - 101,201,300UniSTSGRCm38
MGSCv377108,349,641 - 108,349,814UniSTSGRCm37
Celera7101,554,978 - 101,555,162UniSTS
Cytogenetic Map7E3UniSTS
cM Map750.0UniSTS
Whitehead Genetic737.2UniSTS
RH125611  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387101,284,124 - 101,284,299UniSTSGRCm38
MGSCv377108,432,638 - 108,432,813UniSTSGRCm37
Celera7101,640,211 - 101,640,386UniSTS
Cytogenetic Map7E3UniSTS
UniSTS:235721  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387101,210,604 - 101,211,015UniSTSGRCm38
MGSCv377108,359,118 - 108,359,529UniSTSGRCm37
Celera7101,564,797 - 101,565,208UniSTS
Cytogenetic Map7E3UniSTS
UniSTS:235722  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387101,280,459 - 101,280,790UniSTSGRCm38
MGSCv377108,428,973 - 108,429,304UniSTSGRCm37
Celera7101,634,684 - 101,635,015UniSTS
Cytogenetic Map7E3UniSTS
ha2151  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387101,145,084 - 101,145,769UniSTSGRCm38
MGSCv377108,293,598 - 108,294,283UniSTSGRCm37
Celera7101,498,423 - 101,499,107UniSTS
Cytogenetic Map7E3UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
1301826Pgia3_mproteoglycan induced arthritis 3 (mouse)Not determined767290094101290240Mouse
1301784Ses2_msalmonella enteritidis susceptibility 2 (mouse)Not determined767290094101290240Mouse
1300620Pgia21_mproteoglycan induced arthritis 21 (mouse)Not determined767290094101290240Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
13464255Ifvrq2_minfluenza virus resistance QTL 2 (mouse)792500698106455693Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1652
Count of miRNA genes:541
Interacting mature miRNAs:671
Transcripts:ENSMUST00000032931, ENSMUST00000098250, ENSMUST00000130426, ENSMUST00000137196, ENSMUST00000142727, ENSMUST00000145802, ENSMUST00000151693
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001146010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_199012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030242304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036152850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC107638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC150313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000032931   ⟹   ENSMUSP00000032931
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,757,940 - 100,933,612 (+)Ensembl
GRCm38.p6 Ensembl7101,108,733 - 101,284,405 (+)Ensembl
RefSeq Acc Id: ENSMUST00000098250   ⟹   ENSMUSP00000095850
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,757,982 - 100,933,589 (+)Ensembl
GRCm38.p6 Ensembl7101,108,775 - 101,284,382 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130426
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,758,089 - 100,790,336 (+)Ensembl
GRCm38.p6 Ensembl7101,108,882 - 101,141,129 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137196
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,757,983 - 100,853,134 (+)Ensembl
GRCm38.p6 Ensembl7101,108,776 - 101,203,927 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142727
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,758,087 - 100,840,985 (+)Ensembl
GRCm38.p6 Ensembl7101,108,880 - 101,191,778 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145802
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,758,012 - 100,850,175 (+)Ensembl
GRCm38.p6 Ensembl7101,108,805 - 101,200,968 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151693
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,893,326 - 100,903,128 (+)Ensembl
GRCm38.p6 Ensembl7101,244,119 - 101,253,921 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208063
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,839,450 - 100,841,637 (+)Ensembl
GRCm38.p6 Ensembl7101,190,243 - 101,192,430 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208439   ⟹   ENSMUSP00000146962
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,742,070 - 100,846,110 (+)Ensembl
GRCm38.p6 Ensembl7101,092,863 - 101,196,903 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208638
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,900,049 - 100,903,054 (+)Ensembl
GRCm38.p6 Ensembl7101,250,842 - 101,253,847 (+)Ensembl
RefSeq Acc Id: ENSMUST00000208917
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7100,908,876 - 100,911,560 (+)Ensembl
GRCm38.p6 Ensembl7101,259,669 - 101,262,353 (+)Ensembl
RefSeq Acc Id: NM_001146010   ⟹   NP_001139482
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,757,982 - 100,933,612 (+)NCBI
GRCm387101,108,775 - 101,284,405 (+)NCBI
MGSCv377108,257,289 - 108,432,919 (+)RGD
Celera7101,462,084 - 101,640,492 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_199012   ⟹   NP_950177
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,757,982 - 100,933,612 (+)NCBI
GRCm387101,108,775 - 101,284,405 (+)NCBI
MGSCv377108,257,289 - 108,432,919 (+)RGD
Celera7101,462,084 - 101,640,492 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006507517   ⟹   XP_006507580
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,759,959 - 100,933,613 (+)NCBI
GRCm387101,110,752 - 101,284,405 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006507518   ⟹   XP_006507581
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,757,836 - 100,933,612 (+)NCBI
GRCm387101,108,499 - 101,284,405 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030242304   ⟹   XP_030098164
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,757,965 - 100,933,613 (+)NCBI
GRCm387101,108,758 - 101,284,405 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036152850   ⟹   XP_036008743
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397100,757,926 - 100,933,613 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_950177   ⟸   NM_199012
- Peptide Label: isoform 1
- UniProtKB: Q3USJ8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001139482   ⟸   NM_001146010
- Peptide Label: isoform 2
- UniProtKB: Q3USJ8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006507581   ⟸   XM_006507518
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006507580   ⟸   XM_006507517
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030098164   ⟸   XM_030242304
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000032931   ⟸   ENSMUST00000032931
RefSeq Acc Id: ENSMUSP00000146962   ⟸   ENSMUST00000208439
RefSeq Acc Id: ENSMUSP00000095850   ⟸   ENSMUST00000098250
RefSeq Acc Id: XP_036008743   ⟸   XM_036152850
- Peptide Label: isoform X4
Protein Domains
F-BAR   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3USJ8-F1-model_v2 AlphaFold Q3USJ8 1-740 view protein structure

Promoters
RGD ID:8664955
Promoter ID:EPDNEW_M10508
Type:initiation region
Name:Fchsd2_1
Description:Mus musculus FCH and double SH3 domains 2 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387101,108,805 - 101,108,865EPDNEW
RGD ID:6841133
Promoter ID:MM_KWN:51754
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001146010,   NM_199012,   OTTMUST00000061908,   OTTMUST00000061909,   OTTMUST00000061911,   UC009IOB.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367108,256,716 - 108,257,517 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2448475 AgrOrtholog
Ensembl Genes ENSMUSG00000030691 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000032931 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000095850 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000146962 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032931 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000098250 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000208439 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCHSD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FCHSD2_SH3_2 UniProtKB/Swiss-Prot
  FCHSD_SH3_1 UniProtKB/Swiss-Prot
  SH3-like_dom_sf UniProtKB/Swiss-Prot
  SH3_domain UniProtKB/Swiss-Prot
KEGG Report mmu:207278 UniProtKB/Swiss-Prot
MGD MGI:2448475 ENTREZGENE
NCBI Gene 207278 ENTREZGENE
PANTHER PTHR15735:SF11 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3_1 UniProtKB/Swiss-Prot
  SH3_9 UniProtKB/Swiss-Prot
PhenoGen Fchsd2 PhenoGen
PRINTS SH3DOMAIN UniProtKB/Swiss-Prot
PROSITE F_BAR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot
SMART FCH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SH3 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF103657 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50044 UniProtKB/Swiss-Prot
UniProt A0A140LIU6_MOUSE UniProtKB/TrEMBL
  FCSD2_MOUSE UniProtKB/Swiss-Prot
  Q3U0A9_MOUSE UniProtKB/TrEMBL
  Q3USJ8 ENTREZGENE
UniProt Secondary Q3UQZ2 UniProtKB/Swiss-Prot
  Q6P9R0 UniProtKB/Swiss-Prot
  Q80TS2 UniProtKB/Swiss-Prot