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Gene: Gcfc2 (GC-rich sequence DNA binding factor 2) Mus musculus

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Symbol:

Gcfc2

Name:

GC-rich sequence DNA binding factor 2

RGD ID:

1312441

MGI Page

MGI

Description:

Predicted to enable DNA binding activity. Predicted to be involved in spliceosomal complex assembly. Predicted to be located in cytosol; nucleolus; and nucleoplasm. Predicted to be part of U2-type post-mRNA release spliceosomal complex. Predicted to be active in nucleus. Orthologous to human GCFC2 (GC-rich sequence DNA-binding factor 2).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

A130099G21; AW14602; GC-rich sequence DNA-binding factor; GC-rich sequence DNA-binding factor 2; GCF; GCF2; intron Large complex component GCFC2; TCF-9; Tcf9; transcription factor 9

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GCFC2 (GC-rich sequence DNA-binding factor 2)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Gcfc2 (GC-rich sequence DNA-binding factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gcfc2 (GC-rich sequence DNA-binding factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GCFC2 (GC-rich sequence DNA-binding factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GCFC2 (GC-rich sequence DNA-binding factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gcfc2 (GC-rich sequence DNA-binding factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GCFC2 (GC-rich sequence DNA-binding factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GCFC2 (GC-rich sequence DNA-binding factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gcfc2 (GC-rich sequence DNA-binding factor 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Gcfc2 (GC-rich sequence DNA-binding factor 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GCFC2 (GC-rich sequence DNA-binding factor 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gcfc2 (GC-rich sequence DNA-binding factor 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Drosophila melanogaster (fruit fly):	CG1965	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Caenorhabditis elegans (roundworm):	F43G9.12	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gcfc2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	81,887,543 - 81,936,079 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	81,900,650 - 81,936,896 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	81,910,562 - 81,959,098 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	81,923,669 - 81,959,915 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	81,873,663 - 81,909,092 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	81,889,327 - 81,924,756 (+)	NCBI		MGSCv36	mm8
Celera	6	83,922,328 - 83,960,186 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	35.81	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (ISO)

acetamide (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

cyclosporin A (ISO)

DDE (ISO)

diazinon (ISO)

enzyme inhibitor (ISO)

fipronil (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (ISO)

ivermectin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (ISO)

methyl methanesulfonate (ISO)

Nutlin-3 (ISO)

ochratoxin A (ISO)

potassium dichromate (EXP)

quercetin (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tanespimycin (ISO)

thioacetamide (ISO)

titanium dioxide (EXP)

triphenyl phosphate (ISO)

vinclozolin (ISO)

vitamin E (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA splicing, via spliceosome (IBA)

spliceosomal complex assembly (ISO,ISS)

Cellular Component

cytosol (IEA,ISO)

nucleolus (ISO,ISS)

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO,ISS)

U2-type post-mRNA release spliceosomal complex (ISO,ISS)

Molecular Function

DNA binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	MGDs mouse GO annotations	MGD data from the GO Consortium
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:15345747	PMID:16141072	PMID:16141073	PMID:20059953	PMID:20211142	PMID:21873635
PMID:25859222	PMID:31257544	PMID:32325033

Genomics

Comparative Map Data

Gcfc2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	81,887,543 - 81,936,079 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	81,900,650 - 81,936,896 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	81,910,562 - 81,959,098 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	81,923,669 - 81,959,915 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	81,873,663 - 81,909,092 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	81,889,327 - 81,924,756 (+)	NCBI		MGSCv36	mm8
Celera	6	83,922,328 - 83,960,186 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	35.81	NCBI

GCFC2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	75,662,705 - 75,713,122 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	75,652,000 - 75,710,985 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	75,889,831 - 75,938,041 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	75,742,802 - 75,791,830 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	75,800,948 - 75,849,977	NCBI
Celera	2	75,721,111 - 75,769,393 (-)	NCBI		Celera
Cytogenetic Map	2	p12	NCBI
HuRef	2	75,627,634 - 75,675,844 (-)	NCBI		HuRef
CHM1_1	2	75,819,158 - 75,867,395 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	75,671,995 - 75,722,342 (-)	NCBI		T2T-CHM13v2.0

Gcfc2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	116,039,432 - 116,076,330 (+)	NCBI		GRCr8
mRatBN7.2	4	114,481,613 - 114,519,268 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	114,481,607 - 114,519,962 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	119,937,627 - 119,974,268 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	115,712,809 - 115,749,448 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	114,333,043 - 114,369,678 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	112,662,556 - 112,700,505 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	112,662,609 - 112,699,711 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	177,350,321 - 177,390,090 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	116,167,383 - 116,204,212 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	116,354,439 - 116,448,696 (+)	NCBI
Celera	4	103,480,083 - 103,516,885 (+)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

Gcfc2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	10,173,652 - 10,200,641 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	10,174,291 - 10,202,201 (+)	NCBI	ChiLan1.0	ChiLan1.0

GCFC2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	50,672,727 - 50,719,178 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	50,675,487 - 50,721,932 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	75,734,262 - 75,782,444 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	77,237,702 - 77,286,670 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	77,237,702 - 77,286,670 (-)	Ensembl	panpan1.1		panPan2

GCFC2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	47,629,511 - 47,677,017 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	47,629,577 - 47,676,328 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	47,273,453 - 47,320,943 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	48,492,464 - 48,539,972 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	48,491,771 - 48,540,321 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	47,508,310 - 47,555,762 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	47,572,659 - 47,619,661 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	48,134,934 - 48,182,465 (+)	NCBI		UU_Cfam_GSD_1.0

Gcfc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	8,872,038 - 8,917,261 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936556	1,820,645 - 1,866,131 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936556	1,819,656 - 1,865,858 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GCFC2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	67,547,847 - 67,593,915 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	67,547,803 - 67,609,152 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	71,114,963 - 71,133,170 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GCFC2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	31,524,958 - 31,571,978 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	31,525,483 - 31,573,928 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	80,628,138 - 80,675,299 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gcfc2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624749	27,666,991 - 27,696,055 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Gcfc2
3320 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1934
Count of miRNA genes:	751
Interacting mature miRNAs:	980
Transcripts:	ENSMUST00000043195, ENSMUST00000127949, ENSMUST00000129678, ENSMUST00000132301, ENSMUST00000147673, ENSMUST00000152996
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96633110	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71958006	105958152	Mouse
14697704	Stsl4_m	Salmonella typhimurium susceptibility locus 4 (mouse)					6	77076983	89976982	Mouse
10412119	Stv_m	striatal volumne (mouse)			Not determined		6	60026991	100026967	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71958006	105958152	Mouse
13824985	Alh1_m	amplitude of lateral head displacement 1 (mouse)					6	77976983	96976961	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46912919	136400690	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48696934	125336963	Mouse
12792979	Fbmd2_m	femoral bone mineral density 2, females only (mouse)					6	75026989	115026943	Mouse
1301571	Arrd1_m	age-related retinal degeneration 1 (mouse)			Not determined		6	75521339	92584431	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96633110	Mouse
1300674	Nidd3n_m	non-insulin-dependent diabetes mellitus 3 in NSY (mouse)			Not determined		6	75521339	94202936	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48696934	148351498	Mouse
1301254	Skts11_m	skin tumor susceptibility 11 (mouse)			Not determined		6	51156134	85156284	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58424566	92424693	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71552042	105552160	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71299605	93441074	Mouse
1300618	Pgia19_m	proteoglycan induced arthritis 19 (mouse)			Not determined		6	45290993	87403016	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48703490	125333748	Mouse
4141990	Etax6_m	ethanol induced ataxia 6 (mouse)			Not determined			71299605	86252701	Mouse
4141028	Mclr_m	methylcholanthrene lymphoma resistance (mouse)			Not determined			54350411	88356155	Mouse
1301320	Ots1_m	ovarian teratoma susceptibility 1 (mouse)			Not determined		6	75424566	104480516	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58517416	92517416	Mouse
1300556	Cia6_m	collagen induced arthritis QTL 6 (mouse)			Not determined		6	4464884	87403016	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38646560	92584431	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45290993	128811995	Mouse
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	3050001	117476961	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139076998	Mouse
10043901	Pfat5_m	predicted fat percentage 5 (mouse)			Not determined		6	75584287	109584431	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96633110	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70402880	104403016	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96633110	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52138693	116132228	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70402880	104403016	Mouse
1357875	Pfat2_m	predicted fat percentage 2 (mouse)			Not determined		6	76440930	110441074	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56285194	90285194	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56285194	90285194	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63461721	97461888	Mouse
10412208	Cypr4_m	cytokine production 4 (mouse)			Not determined		6	75693484	109693678	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66690851	100691013	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70402880	104403016	Mouse
14696731	Pairq1_m	P. aeruginosa infection resistance QTL 1 (mouse)					6	81476981	102176961	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73476983	134676963	Mouse
10412195	Efw_m	epididymal fat weight (mouse)			Not determined		6	75521339	94202936	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60034663	94034782	Mouse
4141376	Dbm1_m	diabetes modifier 1 (mouse)			Not determined		6	78606487	121092347	Mouse

Markers in Region

AW146020

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	81,958,179 - 81,958,324	UniSTS	GRCm38
MGSCv37	6	81,908,173 - 81,908,318	UniSTS	GRCm37
Celera	6	83,959,267 - 83,959,412	UniSTS
Cytogenetic Map	6	C3	UniSTS
cM Map	6	34.55	UniSTS
Whitehead/MRC_RH	6	844.92	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_177884	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_177923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_177924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_177925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_177926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_177927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_177928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011241391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030255482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_030255483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_003956217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_003956218	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_377475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC129024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK038369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK050789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK077263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK078171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK136387	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK164830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY730207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000043195 ⟹ ENSMUSP00000035644

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	81,900,650 - 81,936,896 (+)	Ensembl
GRCm38.p6 Ensembl	6	81,923,669 - 81,959,915 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000127949

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	81,918,335 - 81,920,705 (+)	Ensembl
GRCm38.p6 Ensembl	6	81,941,354 - 81,943,724 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000129678

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	81,926,663 - 81,933,934 (+)	Ensembl
GRCm38.p6 Ensembl	6	81,949,682 - 81,956,953 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000132301

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	81,900,661 - 81,921,200 (+)	Ensembl
GRCm38.p6 Ensembl	6	81,923,680 - 81,944,219 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000147673

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	81,909,850 - 81,911,277 (+)	Ensembl
GRCm38.p6 Ensembl	6	81,932,869 - 81,934,296 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000152996 ⟹ ENSMUSP00000138136

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	81,900,654 - 81,936,237 (+)	Ensembl
GRCm38.p6 Ensembl	6	81,923,673 - 81,959,256 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000203959 ⟹ ENSMUSP00000144868

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	81,923,484 - 81,935,043 (+)	Ensembl
GRCm38.p6 Ensembl	6	81,946,503 - 81,958,062 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000204691

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	81,907,696 - 81,908,148 (+)	Ensembl
GRCm38.p6 Ensembl	6	81,930,715 - 81,931,167 (+)	Ensembl

RefSeq Acc Id:

NM_177884 ⟹ NP_808552

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	81,900,660 - 81,936,074 (+)	NCBI
GRCm38	6	81,923,669 - 81,959,098 (+)	NCBI
MGSCv37	6	81,873,663 - 81,909,092 (+)	RGD
Celera	6	83,922,328 - 83,960,186 (+)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

ACCTAGCCTTAAGGAGACGCGCCAATCCTACTTGGAACATGGCTCTCAGGCCCCAGAGGACTTT
CAGGCGGCGCCAGGTCGAGTCCAGCGATAGCGATAGCGATAGCGACGGCGCGAAGGAGCAGAGT
GCGGAGGAGCCGGCGTCTGCCGGCGGCCGAACAGAGGGAGCGGAGCGGCCGCGCGGGGCCCGCA
GCGCCCGGGGCCGAGGTCGGGTCTGGGCGAGTTCCCGCCGCAGCCCGGGAGCTGCTCCCCGCGG
GGACGGCGGAGCAGAATGCAGAACAGCTGAGCTCTCAACGGATGAAGAGGAAGGAACACATACC
TTGACAGGAAGTAAGGGTGATCGGAGTCCGTCCTCTGATAGCTCTTGCTCTCTGGAAGAAAGAG
ACGTTTCACCCATAGTTGAGATCCCCGATGCAGCTTTTATTCAGGCAGCCCGCAGAAAACGGGA
GTTGGCCAGGACCCCAGGGGACTACATTTCATTGGATGTAAACCACTCCTGCTCCACTTCTGAC
TGTAAGAGAAGCAATGAAGAGGACCCAGAGAGCGATCCTGATGACCACGAAAAGAGAATACTGT
TTACCCCAAAGCCTCAAACACTCCGGCAAAGAATGGCTGAAGAAACGTCAATCAGGAGTGAGGA
ATCAAGTGAAGAGAGTCAGGAAGATGAAAACCAAGACATCTGGGAGCAGCAGCAGATGAGGAAA
GCAGTCAGGATCCCGGCGGGACAAAATACAGACCTTTCCCACAGCAGTAAGTCTCAAACCCTGA
AGAAGTTTGATACTTCCATTTCATTTCCACCGGTAAATTTGGAAATTATAAAGAAACAGTTAAA
TAATAGATTAACATTACTACAGGAGTCTCATCGCTCACACCAGAGAGAATATGAAAAATATGAA
CAAGACATCAAGAGTTCAAAGACGGCTATCCAGAATCTTGAGAGTGCATCAGACCATGCTCAAA
ACTACAGATTCTACAGGGGCATGAAAAGTTATGTGGAAAATATAATTGATTGTCTAAATGAAAA
GATTGTCAGCATTGTGGAACTAGAATCATCCATGTACACGTTGCTTTTAAAACGGTCAGAAGCA
CTTTTGAAACGCAGGCAAGATGAATTAAAATGCGAATCATCATATTTGCAGCAGTTATCACGCA
AAGATGAGACATCGGCAAATGGAAGCTTGGCTGTGGATGAAAAGGATCAACGGATTTTAGAAGA
GATTGAAGCTCGGAGGATGCAGAGAAGACAGGCCAGGGAGCTCTCGGGCAGCTGTGACCATCAG
GAAGGGATGTCTAGTGATGATGAGCTGTCTCCTGCAGAGATGACTAACTTCCACAAGTGCCAAG
GTGACATTTTACAGGATTGTAAGAAAGTTTTTGAAGATGTGCATGATGATTTTTGTAACGTCCA
GAATATTTTATTGAAATTTCAGCAGTGGCGAGAAAAGTTTCCTGATTCCTACTATGAAGCCTTC
GTTGGTTTCTGCTTACCAAAGCTTTTAAGTCCCCTGATACGAGTTCAGTTGCTTGACTGGAATC
CTCTTAAGATGGACTCCATAGGTCTAGACAAGATGCCCTGGTTCACAGCTATAACAGAGTTTAT
GGAGAGCAGCATGGACGATATAGGGAAGGAAGATGGTTCTGATAAAAAAATCTTGGCTGCTGTC
ATCAACAAAACAGTTGTTCCTCGACTTACAGATTTTGTAGAGACCATTTGGGATCCCCTGTCAA
CCTCACAGACAAGAAGTTTAACAGTGCACTGCAGAGTGGCTTTTGAACAGTTCGCTTCTGAAAA
TGAAGTTAGTAAAAATAAACAGGATTTACTTAAATCTATTGTTGCAAGAATGAAGAAGTCAATA
GAAGATGATATTTTTATTCCTCTATACCCAAAGAGCTCTGAAGAAGGAAAAATGTCACCACACT
CCAAGTTCCAAGAAAGACAGTTCTGGGGAGCTCTAAAGCTCTTCCGAAATATTCTTCTTTGGAA
TGGCCTTCTCCCAGATGACACCTTGCAAGATCTGGGACTGGGGAAGCTGCTGAATCGCTACCTT
ATCATCTCTCTTACTAATGCCGTCCCTGGACCAGATGTGGTTAAAAAGTGCAGCCAGATAGCAG
CATGTCTACCAGAAAGATGGTTTGAGAACTCTGCTATGAGGACATCAATTCCCCAGCTAGAAAA
CTTCATTAAGTTTTTGTTGCAGTCTGCACAGAAATTATCCTCAAGTGAATTCAGGAATGAAGTC
AGTGAAATAATTCTTATCCTGGTGAAGGTAAAAGCTCTGACTCAAGCCGAATCCCTCAGAGAAG
AGCGTCCCCTGGAGCCCCTCCCAGCCCAGAGTACAGGTGTTTGAGTGCGCCGTGTGGGAGTGCC
CAGAGTCAAGATGACCGTGTCACAGCCGATGCCGCCTTTGCTGGGTGCCCACTTGGGGTGTGGC
CAGGCCTCCTGATGCTTCGTAGCTGAGGGAAGTAATGCACAGCAGCAGCCGAGCTCAGTGTGCT
GCTCTTTTACTCTCTCAATCCGGAAGGAAATGAAGCAATCTGACACACAGAAGCATGCCTGAAT
CAAAACCATCTTCAGCAAACTCCAATGTTTGCAGATCAGCTAATGAGGAAGCTCTATCTCTGGA
TGGTTTCTTTTATCTTATTCTTTGGTGGGGACTCGGTCTCATTCTGAAGTGTAAGGAATTACTT
ATTAAATAGCTAACACATTTTTATACAAACTGTCCTTTCAAAATCTGTACTGACTTACTGTGTG
AAATCAGTGCAAGAGAGTGCCAGTGATCTCCAGATTTTGATTCATTGTCAATTTGTTAAAAAAA
AAAAAACTTTGAAAAAAGATTTATTTTTATATGTGTGGTCATGTATGTACCTGGGTGGGTTTAG
CACTACCTCCATGTAGGGGCCAGAGGGCATCAGGTCCCCTGGAACTGGAATCCAGGAGGTTGTG
GGCCATCTAATGTGCTTGGAACCAAACCCAGGTCCTCAGAAGAGATCTTCACCCTCCCTGTGAA
GAATGAAGCTGTGGTCTGAGTCATCTGTAAGTCCTTAAGTGAGGCTTTTTTGCTATGTTTTGTG
TAACTCATGGTAGGACTAAAAAGGCCATTGCTCTTTTAAATACAGAAATGTAAAGTATTTCTCT
AATTAAGGTAGTCTGAGGCAAGGTGATTAAGAAATTATGAACTTTTCTCAAAATGACTGTATTA
ATGTTCTTAAGTATATTTGTTAAGCAACTCAATGATGATCCTGTATTTATTTTTCCGTGTTGTC
ACTTTAGACATTTGCTCGTTACAAAAGCATGTGTATATGTGTGCAGAAAGTTTTGTATATAAAT
GGCAGAGACTTTATTTTTGCTGTTAAAGGGCACTTTTGGAAACTGTT

hide sequence

RefSeq Acc Id:

NR_177923

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	81,900,660 - 81,936,074 (+)	NCBI

RefSeq Acc Id:

NR_177924

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	81,900,660 - 81,936,074 (+)	NCBI

RefSeq Acc Id:

NR_177925

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	81,900,660 - 81,936,074 (+)	NCBI

RefSeq Acc Id:

NR_177926

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	81,900,660 - 81,936,074 (+)	NCBI

RefSeq Acc Id:

NR_177927

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	81,900,660 - 81,925,841 (+)	NCBI

RefSeq Acc Id:

NR_177928

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	81,900,660 - 81,925,841 (+)	NCBI

RefSeq Acc Id:

XM_011241391 ⟹ XP_011239693

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	81,909,803 - 81,936,077 (+)	NCBI
GRCm38	6	81,932,822 - 81,959,096 (+)	NCBI

Sequence:

show sequence

AGTGAGGAATCAAGTGAAGAGAGTCAGGAAGATGAAAACCAAGACATCTGGGAGCAGCAGCAGA
TGAGGAAAGCAGTCAGGATCCCGGCGCATGGCACAAACAGAGCCACCTTGGAAGACGGAATGTC
AGCGGGGAACTGCATTCATCCAGTTGGACTCTGGACAAGGACAAAATACAGACCTTTCCCACAG
CAGTAAGTCTCAAACCCTGAAGAAGTTTGATACTTCCATTTCATTTCCACCGGTAAATTTGGAA
ATTATAAAGAAACAGTTAAATAATAGATTAACATTACTACAGGAGTCTCATCGCTCACACCAGA
GAGAATATGAAAAATATGAACAAGACATCAAGAGTTCAAAGACGGCTATCCAGAATCTTGAGAG
TGCATCAGACCATGCTCAAAACTACAGATTCTACAGGGGCATGAAAAGTTATGTGGAAAATATA
ATTGATTGTCTAAATGAAAAGATTGTCAGCATTGTGGAACTAGAATCATCCATGTACACGTTGC
TTTTAAAACGGTCAGAAGCACTTTTGAAACGCAGGCAAGATGAATTAAAATGCGAATCATCATA
TTTGCAGCAGTTATCACGCAAAGATGAGACATCGGCAAATGGAAGCTTGGCTGTGGATGAAAAG
GATCAACGGATTTTAGAAGAGATTGAAGCTCGGAGGATGCAGAGAAGACAGGCCAGGGAGCTCT
CGGGCAGCTGTGACCATCAGGAAGGGATGTCTAGTGATGATGAGCTGTCTCCTGCAGAGATGAC
TAACTTCCACAAGTGCCAAGGTGACATTTTACAGGATTGTAAGAAAGTTTTTGAAGATGTGCAT
GATGATTTTTGTAACGTCCAGAATATTTTATTGAAATTTCAGCAGTGGCGAGAAAAGTTTCCTG
ATTCCTACTATGAAGCCTTCGTTGGTTTCTGCTTACCAAAGCTTTTAAGTCCCCTGATACGAGT
TCAGTTGCTTGACTGGAATCCTCTTAAGATGGACTCCATAGGTCTAGACAAGATGCCCTGGTTC
ACAGCTATAACAGAGTTTATGGAGAGCAGCATGGACGATATAGGGAAGGAAGATGGTTCTGATA
AAAAAATCTTGGCTGCTGTCATCAACAAAACAGTTGTTCCTCGACTTACAGATTTTGTAGAGAC
CATTTGGGATCCCCTGTCAACCTCACAGACAAGAAGTTTAACAGTGCACTGCAGAGTGGCTTTT
GAACAGTTCGCTTCTGAAAATGAAGTTAGTAAAAATAAACAGGATTTACTTAAATCTATTGTTG
CAAGAATGAAGAAGTCAATAGAAGATGATATTTTTATTCCTCTATACCCAAAGAGCTCTGAAGA
AGGAAAAATGTCACCACACTCCAAGTTCCAAGAAAGACAGTTCTGGGGAGCTCTAAAGCTCTTC
CGAAATATTCTTCTTTGGAATGGCCTTCTCCCAGATGACACCTTGCAAGATCTGGGACTGGGGA
AGCTGCTGAATCGCTACCTTATCATCTCTCTTACTAATGCCGTCCCTGGACCAGATGTGGTTAA
AAAGTGCAGCCAGATAGCAGCATGTCTACCAGAAAGATGGTTTGAGAACTCTGCTATGAGGACA
TCAATTCCCCAGCTAGAAAACTTCATTAAGTTTTTGTTGCAGTCTGCACAGAAATTATCCTCAA
GTGAATTCAGGAATGAAGTCAGTGAAATAATTCTTATCCTGGTGAAGGTAAAAGCTCTGACTCA
AGCCGAATCCCTCAGAGAAGAGCGTCCCCTGGAGCCCCTCCCAGCCCAGAGTACAGGTGTTTGA
GTGCGCCGTGTGGGAGTGCCCAGAGTCAAGATGACCGTGTCACAGCCGATGCCGCCTTTGCTGG
GTGCCCACTTGGGGTGTGGCCAGGCCTCCTGATGCTTCGTAGCTGAGGGAAGTAATGCACAGCA
GCAGCCGAGCTCAGTGTGCTGCTCTTTTACTCTCTCAATCCGGAAGGAAATGAAGCAATCTGAC
ACACAGAAGCATGCCTGAATCAAAACCATCTTCAGCAAACTCCAATGTTTGCAGATCAGCTAAT
GAGGAAGCTCTATCTCTGGATGGTTTCTTTTATCTTATTCTTTGGTGGGGACTCGGTCTCATTC
TGAAGTGTAAGGAATTACTTATTAAATAGCTAACACATTTTTATACAAACTGTCCTTTCAAAAT
CTGTACTGACTTACTGTGTGAAATCAGTGCAAGAGAGTGCCAGTGATCTCCAGATTTTGATTCA
TTGTCAATTTGTTAAAAAAAAAAAAACTTTGAAAAAAGATTTATTTTTATATGTGTGGTCATGT
ATGTACCTGGGTGGGTTTAGCACTACCTCCATGTAGGGGCCAGAGGGCATCAGGTCCCCTGGAA
CTGGAATCCAGGAGGTTGTGGGCCATCTAATGTGCTTGGAACCAAACCCAGGTCCTCAGAAGAG
ATCTTCACCCTCCCTGTGAAGAATGAAGCTGTGGTCTGAGTCATCTGTAAGTCCTTAAGTGAGG
CTTTTTTGCTATGTTTTGTGTAACTCATGGTAGGACTAAAAAGGCCATTGCTCTTTTAAATACA
GAAATGTAAAGTATTTCTCTAATTAAGGTAGTCTGAGGCAAGGTGATTAAGAAATTATGAACTT
TTCTCAAAATGACTGTATTAATGTTCTTAAGTATATTTGTTAAGCAACTCAATGATGATCCTGT
ATTTATTTTTCCGTGTTGTCACTTTAGACATTTGCTCGTTACAAAAGCATGTGTATATGTGTGC
AGAAAGTTTTGTATATAAATGGCAGAGACTTTATTTTTGCTGTTAAAGGGCACTTTTGGAAACT
G

hide sequence

RefSeq Acc Id:

XM_030255482 ⟹ XP_030111342

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	81,887,543 - 81,936,079 (+)	NCBI
GRCm38	6	81,910,562 - 81,959,098 (+)	NCBI

Sequence:

show sequence

TCGCTATAGCGCTGGCTATAACGCGTGCACAAACGGCCCACCGTGATGATATATCAAGGAGCCC
ACGAAATTGGAGATTGAGTCCCATGACTGTCAGAGAACATATCCAGGACTCCACTCTGCTTGGA
TAGCTCTGTGGAAGAAACTGATGGATGGCAAGTGTTCAGGTACCCAGTTTTAAAGACCTTTTCT
GAGCCTGGCCAAGGTTACATCTGTAATGTCAGGACACAAGAGGCTGCTGCAGGAGGATCACTAG
TTTTAACCCAACATGGACCACATAGCCAGACTTCTTCAGATTAACAAATCAGTAAGGAGAATGC
AGAACAGCTGAGCTCTCAACGGATGAAGAGGAAGGAACACATACCTTGACAGGAAGTAAGGGTG
ATCGGAGTCCGTCCTCTGATAGCTCTTGCTCTCTGGAAGAAAGAGACGTTTCACCCATAGTTGA
GATCCCCGATGCAGCTTTTATTCAGGCAGCCCGCAGAAAACGGGAGTTGGCCAGGACCCCAGGG
GACTACATTTCATTGGATGTAAACCACTCCTGCTCCACTTCTGACTGTAAGAGAAGCAATGAAG
AGGACCCAGAGAGCGATCCTGATGACCACGAAAAGAGAATACTGTTTACCCCAAAGCCTCAAAC
ACTCCGGCAAAGAATGGCTGAAGAAACGTCAATCAGGAGTGAGGAATCAAGTGAAGAGAGTCAG
GAAGATGAAAACCAAGACATCTGGGAGCAGCAGCAGATGAGGAAAGCAGTCAGGATCCCGGCGG
GACAAAATACAGACCTTTCCCACAGCAGTAAGTCTCAAACCCTGAAGAAGTTTGATACTTCCAT
TTCATTTCCACCGGTAAATTTGGAAATTATAAAGAAACAGTTAAATAATAGATTAACATTACTA
CAGGAGTCTCATCGCTCACACCAGAGAGAATATGAAAAATATGAACAAGACATCAAGAGTTCAA
AGACGGCTATCCAGAATCTTGAGAGTGCATCAGACCATGCTCAAAACTACAGATTCTACAGGGG
CATGAAAAGTTATGTGGAAAATATAATTGATTGTCTAAATGAAAAGATTGTCAGCATTGTGGAA
CTAGAATCATCCATGTACACGTTGCTTTTAAAACGGTCAGAAGCACTTTTGAAACGCAGGCAAG
ATGAATTAAAATGCGAATCATCATATTTGCAGCAGTTATCACGCAAAGATGAGACATCGGCAAA
TGGAAGCTTGGCTGTGGATGAAAAGGATCAACGGATTTTAGAAGAGATTGAAGCTCGGAGGATG
CAGAGAAGACAGGCCAGGGAGCTCTCGGGCAGCTGTGACCATCAGGAAGGGATGTCTAGTGATG
ATGAGCTGTCTCCTGCAGAGATGACTAACTTCCACAAGTGCCAAGGTGACATTTTACAGGATTG
TAAGAAAGTTTTTGAAGATGTGCATGATGATTTTTGTAACGTCCAGAATATTTTATTGAAATTT
CAGCAGTGGCGAGAAAAGTTTCCTGATTCCTACTATGAAGCCTTCGTTGGTTTCTGCTTACCAA
AGCTTTTAAGTCCCCTGATACGAGTTCAGTTGCTTGACTGGAATCCTCTTAAGATGGACTCCAT
AGGTCTAGACAAGATGCCCTGGTTCACAGCTATAACAGAGTTTATGGAGAGCAGCATGGACGAT
ATAGGGAAGGAAGATGGTTCTGATAAAAAAATCTTGGCTGCTGTCATCAACAAAACAGTTGTTC
CTCGACTTACAGATTTTGTAGAGACCATTTGGGATCCCCTGTCAACCTCACAGACAAGAAGTTT
AACAGTGCACTGCAGAGTGGCTTTTGAACAGTTCGCTTCTGAAAATGAAGTTAGTAAAAATAAA
CAGGATTTACTTAAATCTATTGTTGCAAGAATGAAGAAGTCAATAGAAGATGATATTTTTATTC
CTCTATACCCAAAGAGCTCTGAAGAAGGAAAAATGTCACCACACTCCAAGTTCCAAGAAAGACA
GTTCTGGGGAGCTCTAAAGCTCTTCCGAAATATTCTTCTTTGGAATGGCCTTCTCCCAGATGAC
ACCTTGCAAGATCTGGGACTGGGGAAGCTGCTGAATCGCTACCTTATCATCTCTCTTACTAATG
CCGTCCCTGGACCAGATGTGGTTAAAAAGTGCAGCCAGATAGCAGCATGTCTACCAGAAAGATG
GTTTGAGAACTCTGCTATGAGGACATCAATTCCCCAGCTAGAAAACTTCATTAAGTTTTTGTTG
CAGTCTGCACAGAAATTATCCTCAAGTGAATTCAGGAATGAAGTCAGTGAAATAATTCTTATCC
TGGTGAAGGTAAAAGCTCTGACTCAAGCCGAATCCCTCAGAGAAGAGCGTCCCCTGGAGCCCCT
CCCAGCCCAGAGTACAGGTGTTTGAGTGCGCCGTGTGGGAGTGCCCAGAGTCAAGATGACCGTG
TCACAGCCGATGCCGCCTTTGCTGGGTGCCCACTTGGGGTGTGGCCAGGCCTCCTGATGCTTCG
TAGCTGAGGGAAGTAATGCACAGCAGCAGCCGAGCTCAGTGTGCTGCTCTTTTACTCTCTCAAT
CCGGAAGGAAATGAAGCAATCTGACACACAGAAGCATGCCTGAATCAAAACCATCTTCAGCAAA
CTCCAATGTTTGCAGATCAGCTAATGAGGAAGCTCTATCTCTGGATGGTTTCTTTTATCTTATT
CTTTGGTGGGGACTCGGTCTCATTCTGAAGTGTAAGGAATTACTTATTAAATAGCTAACACATT
TTTATACAAACTGTCCTTTCAAAATCTGTACTGACTTACTGTGTGAAATCAGTGCAAGAGAGTG
CCAGTGATCTCCAGATTTTGATTCATTGTCAATTTGTTAAAAAAAAAAAAACTTTGAAAAAAGA
TTTATTTTTATATGTGTGGTCATGTATGTACCTGGGTGGGTTTAGCACTACCTCCATGTAGGGG
CCAGAGGGCATCAGGTCCCCTGGAACTGGAATCCAGGAGGTTGTGGGCCATCTAATGTGCTTGG
AACCAAACCCAGGTCCTCAGAAGAGATCTTCACCCTCCCTGTGAAGAATGAAGCTGTGGTCTGA
GTCATCTGTAAGTCCTTAAGTGAGGCTTTTTTGCTATGTTTTGTGTAACTCATGGTAGGACTAA
AAAGGCCATTGCTCTTTTAAATACAGAAATGTAAAGTATTTCTCTAATTAAGGTAGTCTGAGGC
AAGGTGATTAAGAAATTATGAACTTTTCTCAAAATGACTGTATTAATGTTCTTAAGTATATTTG
TTAAGCAACTCAATGATGATCCTGTATTTATTTTTCCGTGTTGTCACTTTAGACATTTGCTCGT
TACAAAAGCATGTGTATATGTGTGCAGAAAGTTTTGTATATAAATGGCAGAGACTTTATTTTTG
CTGTTAAAGGGCACTTTTGGAAACTGTT

hide sequence

RefSeq Acc Id:

XM_030255483 ⟹ XP_030111343

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	81,900,615 - 81,912,606 (+)	NCBI
GRCm38	6	81,923,633 - 81,935,625 (+)	NCBI

Sequence:

show sequence

GCATCTCGAGACGCGCGACTGCGCAGGCGCCGGACACCTAGCCTTAAGGAGACGCGCCAATCCT
ACTTGGAACATGGCTCTCAGGCCCCAGAGGACTTTCAGGCGGCGCCAGGTCGAGTCCAGCGATA
GCGATAGCGATAGCGACGGCGCGAAGGAGCAGAGTGCGGAGGAGCCGGCGTCTGCCGGCGGCCG
AACAGAGGGAGCGGAGCGGCCGCGCGGGGCCCGCAGCGCCCGGGGCCGAGGTCGGGTCTGGGCG
AGTTCCCGCCGCAGCCCGGGAGCTGCTCCCCGCGGGGACGGCGGAGCAGAATGCAGAACAGCTG
AGCTCTCAACGGATGAAGAGGAAGGAACACATACCTTGACAGGAAGTAAGGGTGATCGGAGTCC
GTCCTCTGATAGCTCTTGCTCTCTGGAAGAAAGAGACGTTTCACCCATAGTTGAGATCCCCGAT
GCAGCTTTTATTCAGGCAGCCCGCAGAAAACGGGAGTTGGCCAGGACCCCAGGGGACTACATTT
CATTGGATGTAAACCACTCCTGCTCCACTTCTGACTGTAAGAGAAGCAATGAAGAGGACCCAGA
GAGCGATCCTGATGACCACGAAAAGAGAATACTGTTTACCCCAAAGCCTCAAACACTCCGGCAA
AGAATGGCTGAAGAAACGTCAATCAGGAGTGAGGAATCAAGTGAAGAGAGTCAGGAAGATGAAA
ACCAAGACATCTGGGAGCAGCAGCAGATGAGGAAAGCAGTCAGGATCCCGGCGCATGGCACAAA
CAGAGCCACCTTGGAAGACGGAATGTCAGCGGGGAACTGCATTCATCCAGTTGGACTCTGGACA
AGTCTGTAGTCATTTTTTTGATTGCTGATTTATATGAGAGAGAGCCCCTCCCTGTGGGCAGTAC
CACCACTGGGCAGGTGGTCCTGGGTTACATAGGGAAGCAGGTTGAGTAAGCCATAGTGAACAAG
CAAGAAAACAACACTTCTTCCATAGTCTCTACTCTTGTTTAGAGGTTCGAGCCTTGAGTTTCCT
TGTTTCCTTGATGATGGACTGTTGTTTGCCTTGGTCAGTGTTTTACCACAACTGAGAAGCAGAT
GAGGATACCCTGTTTCTACCTCGTACAAATCATTTCAGTGGTTGCCTAACATTCTTGAGAGTTG
GCAAATCATAATTTACTTGACCATCCTTCCTCTTGATGAATAGTTTAGGTACTGTTATTTTCCT
GCTTGCAAATAAGACTGACTATTCAGATATTTTCCTCCTCCTTCTCTTCACATGTCAGTTTAGG
ACTGTTCCCTAGGAATAATTGCTAAGATAGCATCCACCCCCAATCAAGGGCAGAAAACCTTTCG
TAGGTCTTTGTTGCGTAAATTCTATAGCTCTTCAAAGGAAACATCTCCGTTTCGGTGATCACTG
TTAGGAAATGTCTCACTACAGTCTCGGCATCTTGCGGTGCAGATTTAATGGATGAAACTGAAAC
CTCTTACTTATTTCATTTGCATCATTACCCAGTGTGTGATGACCTCCAGTGTGGAGGTCTGTCA
CTGTCTGATTCCTGTGGCTGCTCTAAAAGCTCACCACTGATTTGGTAGTAGTTTACTCTAACAA
AACAAACAAACAAAAACAACCCAGAATCAAAATATGAGCTGATCTGCCATATTCCAGAATCTCT
AGAAGAGAATTCACGCCTTGACTCTTGCGGGTTCTGTTGGCATTCTTCAGCATGCGCTTGTATT
TCTCACTGCATCACTCTGCCTCTCATGAGGACCCAAGCTACTGTGGGCCCTTTGTGCATAATCA
GATCCAGTCCTACTACCCAAAGCCGCCTCAGATGTATCTGCTGCCATGTAAGACAACACTGACG
TAAATGGAAGTGTTAAGGGGTTTCCATTAGCATACAGCAGCCAGTTACAGGAATGCGCAGTCTG
CTTGAGTGACAGATGAGGAAAATCCCTGCAGTGAGTTTCTGTGCTACACGTCTCAGTGTAGCCC
CAATGACGTAGTGTTGTAAGAAAGTGGGCACACGGGAGAGGGAAGAAAGTCCTCCCAGAAGTGA
TCCTCCAGGCACTATTAAAAGATATCCATGACTTAGGGAGTGGAAACCTGAAGGAATGTCAGGA
CTGTGTTGGGATTCGCGATTAGATTGGACCTGGAAGAGGCTTGGAGACAACTGAGGTGAGCCAC
AATGCCTGATGGAAAATAGAAGCAGTGGCTGAGTCTCTGGTCCGTGTCTTCATGTTGCTTGTCT
GACAGTGGACTTTGAGAAACTGCTGTGCACTGCAAGTGTGGTAGTGGAAACTGATGGGAAGGGC
TGTAGGATGTTCTCTTAGGAGTGCATTCTCTGCAGGTTCCCAGCCCTAGACAGCCATGGAGTTA
CTCATTCACAATTCCTCAAGAACTCTGCCTTTCCACAGTGCATCAGAATATCAGCAAACTTCAG
GAACTAACTGTCATGGAAGTCAGAAGTTTAGAATTCATCATGCCCATATGAATTTAATAGTCTC
AAGGCTAGTGCTGTAGCTCAGCGGTAGTGCACCTACCTGGCATACATGAGGCTATAGGTTCAGT
CCTCAGTACTGCCAAGCTGGGGGTGGAGTGGGTGGAAGTTGCAGTTTTTGGTTTTGTTTGATTT
TGGTTTTGGTTTCTGTTTCTCTAGGACAGGG

hide sequence

RefSeq Acc Id:

XR_003956217

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	81,900,612 - 81,936,077 (+)	NCBI
GRCm38	6	81,923,630 - 81,959,096 (+)	NCBI

Sequence:

show sequence

TGCGCATCTCGAGACGCGCGACTGCGCAGGCGCCGGACACCTAGCCTTAAGGAGACGCGCCAAT
CCTACTTGGAACATGGCTCTCAGGCCCCAGAGGACTTTCAGGCGGCGCCAGGTCGAGTCCAGCG
ATAGCGATAGCGATAGCGACGGCGCGAAGGAGCAGAGTGCGGAGGAGCCGGCGTCTGCCGGCGG
CCGAACAGAGGGAGCGGAGCGGCCGCGCGGGGCCCGCAGCGCCCGGGGCCGAGGTCGGGTCTGG
GCGAGTTCCCGCCGCAGCCCGGGAGCTGCTCCCCGCGGGGACGGCGGAGCAGAATGCAGAACAG
CTGAGCTCTCAACGGATGAAGAGGAAGGAACACATACCTTGACAGGAAGTAAGGGTGATCGGAG
TCCGTCCTCTGATAGCTCTTGCTCTCTGGAAGAAAGAGACGTTTCACCCATAGTTGAGATCCCC
GATGCAGCTTTTATTCAGGCAGCCCGCAGAAAACGGGAGTTGGCCAGGACCCCAGGGGACTACA
TTTCATTGGATGTAAACCACTCCTGCTCCACTTCTGACTGTAAGAGAAGCAATGAAGAGGACCC
AGAGAGCGATCCTGATGACCACGAAAAGAGAATACTGTTTACCCCAAAGCCTCAAACACTCCGG
CAAAGAATGGCTGAAGAAACGTCAATCAGGAGTGAGGAATCAAGTGAAGAGAGTCAGGAAGATG
AAAACCAAGACATCTGGGAGCAGCAGCAGATGAGGAAAGCAGTCAGGATCCCGGCGCATGGCAC
AAACAGAGCCACCTTGGAAGACGGAATGTCAGCGGGGAACTGCATTCATCCAGTTGGACTCTGG
ACAAGACAGGGTCTCTGTGTGCAGCCCTGGCTGCCCTGGGACTCGTCTATAGATGAGACAGACA
TCACACACACAGAGACCGTCCTGCCTCTGCTGTCTGAGTGCTGGAAGATAAGGCATTTGCCACA
ATGCCTGGCTGGAAAAATAGGGACAAAATACAGACCTTTCCCACAGCAGTAAGTCTCAAACCCT
GAAGAAGTTTGATACTTCCATTTCATTTCCACCGGTAAATTTGGAAATTATAAAGAAACAGTTA
AATAATAGATTAACATTACTACAGGAGTCTCATCGCTCACACCAGAGAGAATATGAAAAATATG
AACAAGACATCAAGAGTTCAAAGACGGCTATCCAGAATCTTGAGAGTGCATCAGACCATGCTCA
AAACTACAGATTCTACAGGGGCATGAAAAGTTATGTGGAAAATATAATTGATTGTCTAAATGAA
AAGATTGTCAGCATTGTGGAACTAGAATCATCCATGTACACGTTGCTTTTAAAACGGTCAGAAG
CACTTTTGAAACGCAGGCAAGATGAATTAAAATGCGAATCATCATATTTGCAGCAGTTATCACG
CAAAGATGAGACATCGGCAAATGGAAGCTTGGCTGTGGATGAAAAGGATCAACGGATTTTAGAA
GAGATTGAAGCTCGGAGGATGCAGAGAAGACAGGCCAGGGAGCTCTCGGGCAGCTGTGACCATC
AGGAAGGGATGTCTAGTGATGATGAGCTGTCTCCTGCAGAGATGACTAACTTCCACAAGTGCCA
AGCAGTGGCGAGAAAAGTTTCCTGATTCCTACTATGAAGCCTTCGTTGGTTTCTGCTTACCAAA
GCTTTTAAGTCCCCTGATACGAGTTCAGTTGCTTGACTGGAATCCTCTTAAGATGGACTCCATA
GGTCTAGACAAGATGCCCTGGTTCACAGCTATAACAGAGTTTATGGAGAGCAGCATGGACGATA
TAGGGAAGGAAGATGGTTCTGATAAAAAAATCTTGGCTGCTGTCATCAACAAAACAGTTGTTCC
TCGACTTACAGATTTTGTAGAGACCATTTGGGATCCCCTGTCAACCTCACAGACAAGAAGTTTA
ACAGTGCACTGCAGAGTGGCTTTTGAACAGTTCGCTTCTGAAAATGAAGTTAGTAAAAATAAAC
AGGATTTACTTAAATCTATTGTTGCAAGAATGAAGAAGTCAATAGAAGATGATATTTTTATTCC
TCTATACCCAAAGAGCTCTGAAGAAGGAAAAATGTCACCACACTCCAAGTTCCAAGAAAGACAG
TTCTGGGGAGCTCTAAAGCTCTTCCGAAATATTCTTCTTTGGAATGGCCTTCTCCCAGATGACA
CCTTGCAAGATCTGGGACTGGGGAAGCTGCTGAATCGCTACCTTATCATCTCTCTTACTAATGC
CGTCCCTGGACCAGATGTGGTTAAAAAGTGCAGCCAGATAGCAGCATGTCTACCAGAAAGATGG
TTTGAGAACTCTGCTATGAGGACATCAATTCCCCAGCTAGAAAACTTCATTAAGTTTTTGTTGC
AGTCTGCACAGAAATTATCCTCAAGTGAATTCAGGAATGAAGTCAGTGAAATAATTCTTATCCT
GGTGAAGGTAAAAGCTCTGACTCAAGCCGAATCCCTCAGAGAAGAGCGTCCCCTGGAGCCCCTC
CCAGCCCAGAGTACAGGTGTTTGAGTGCGCCGTGTGGGAGTGCCCAGAGTCAAGATGACCGTGT
CACAGCCGATGCCGCCTTTGCTGGGTGCCCACTTGGGGTGTGGCCAGGCCTCCTGATGCTTCGT
AGCTGAGGGAAGTAATGCACAGCAGCAGCCGAGCTCAGTGTGCTGCTCTTTTACTCTCTCAATC
CGGAAGGAAATGAAGCAATCTGACACACAGAAGCATGCCTGAATCAAAACCATCTTCAGCAAAC
TCCAATGTTTGCAGATCAGCTAATGAGGAAGCTCTATCTCTGGATGGTTTCTTTTATCTTATTC
TTTGGTGGGGACTCGGTCTCATTCTGAAGTGTAAGGAATTACTTATTAAATAGCTAACACATTT
TTATACAAACTGTCCTTTCAAAATCTGTACTGACTTACTGTGTGAAATCAGTGCAAGAGAGTGC
CAGTGATCTCCAGATTTTGATTCATTGTCAATTTGTTAAAAAAAAAAAAACTTTGAAAAAAGAT
TTATTTTTATATGTGTGGTCATGTATGTACCTGGGTGGGTTTAGCACTACCTCCATGTAGGGGC
CAGAGGGCATCAGGTCCCCTGGAACTGGAATCCAGGAGGTTGTGGGCCATCTAATGTGCTTGGA
ACCAAACCCAGGTCCTCAGAAGAGATCTTCACCCTCCCTGTGAAGAATGAAGCTGTGGTCTGAG
TCATCTGTAAGTCCTTAAGTGAGGCTTTTTTGCTATGTTTTGTGTAACTCATGGTAGGACTAAA
AAGGCCATTGCTCTTTTAAATACAGAAATGTAAAGTATTTCTCTAATTAAGGTAGTCTGAGGCA
AGGTGATTAAGAAATTATGAACTTTTCTCAAAATGACTGTATTAATGTTCTTAAGTATATTTGT
TAAGCAACTCAATGATGATCCTGTATTTATTTTTCCGTGTTGTCACTTTAGACATTTGCTCGTT
ACAAAAGCATGTGTATATGTGTGCAGAAAGTTTTGTATATAAATGGCAGAGACTTTATTTTTGC
TGTTAAAGGGCACTTTTGGAAACTG

hide sequence

RefSeq Acc Id:

XR_003956218

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	81,900,615 - 81,936,077 (+)	NCBI
GRCm38	6	81,923,633 - 81,959,096 (+)	NCBI

Sequence:

show sequence

GCATCTCGAGACGCGCGACTGCGCAGGCGCCGGACACCTAGCCTTAAGGAGACGCGCCAATCCT
ACTTGGAACATGGCTCTCAGGCCCCAGAGGACTTTCAGGCGGCGCCAGGTCGAGTCCAGCGATA
GCGATAGCGATAGCGACGGCGCGAAGGAGCAGAGTGCGGAGGAGCCGGCGTCTGCCGGCGGCCG
AACAGAGGGAGCGGAGCGGCCGCGCGGGGCCCGCAGCGCCCGGGGCCGAGGTCGGGTCTGGGCG
AGTTCCCGCCGCAGCCCGGGAGCTGCTCCCCGCGGGGACGGCGGAGCAGAATGCAGAACAGCTG
AGCTCTCAACGGATGAAGAGGAAGGAACACATACCTTGACAGGAAGTAAGGGTGATCGGAGTCC
GTCCTCTGATAGCTCTTGCTCTCTGGAAGAAAGAGACGTTTCACCCATAGTTGAGATCCCCGAT
GCAGCTTTTATTCAGGCAGCCCGCAGAAAACGGGAGTTGGCCAGGACCCCAGGGGACTACATTT
CATTGGATGTAAACCACTCCTGCTCCACTTCTGACTGTAAGAGAAGCAATGAAGAGGACCCAGA
GAGCGATCCTGATGACCACGAAAAGAGAATACTGTTTACCCCAAAGCCTCAAACACTCCGGCAA
AGAATGGCTGAAGAAACGTCAATCAGGAGTGAGGAATCAAGTGAAGAGAGTCAGGAAGATGAAA
ACCAAGACATCTGGGAGCAGCAGCAGATGAGGAAAGCAGTCAGGATCCCGGCGCATGGCACAAA
CAGAGCCACCTTGGAAGACGGAATGTCAGCGGGGAACTGCATTCATCCAGTTGGACTCTGGACA
AGGACAAAATACAGACCTTTCCCACAGCAGTAAGTCTCAAACCCTGAAGAAGTTTGATACTTCC
ATTTCATTTCCACCGGTAAATTTGGAAATTATAAAGAAACAGTTAAATAATAGATTAACATTAC
TACAGGAGTCTCATCGCTCACACCAGAGAGAATATGAAAAATATGAACAAGACATCAAGAGTTC
AAAGACGGCTATCCAGAATCTTGAGAGTGCATCAGACCATGCTCAAAACTACAGATTCTACAGG
GGCATGAAAAGTTATGTGGAAAATATAATTGATTGTCTAAATGAAAAGATTGTCAGCATTGTGG
AACTAGAATCATCCATGTACACGTTGCTTTTAAAACGGTCAGAAGCACTTTTGAAACGCAGGCA
AGATGAATTAAAATGCGAATCATCATATTTGCAGCAGTTATCACGCAAAGATGAGACATCGGCA
AATGGAAGCTTGGCTGTGGATGAAAAGGATCAACGGATTTTAGAAGAGATTGAAGCTCGGAGGA
TGCAGAGAAGACAGGCCAGGGAGCTCTCGGGCAGCTGTGACCATCAGGAAGGGATGTCTAGTGA
TGATGAGCTGTCTCCTGCAGAGATGACTAACTTCCACAAGTGCCAAGGTGACATTTTACAGGAT
TGTAAGAAAGTTTTTGAAGATGTGCATGATGATTTTTGTAACGTCCAGAATATTTTATTGAAAT
TTCAGCAGTGGCGAGAAAAGTTTCCTGATTCCTACTATGAAGCCTTCGTTGGTTTCTGCTTACC
AAAGCTTTTAAGTCCCCTGATACGAGTTCAGTTGCTTGACTGGAATCCTCTTAAGATGGACTCC
ATAGGTCTAGACAAGATGCCCTGGTTCACAGCTATAACAGAGTTTATGGAGAGCAGCATGGACG
ATATAGGGAAGGAAGATGGTTCTGATAAAAAAATCTTGGCTGCTGTCATCAACAAAACAGTTGT
TCCTCGACTTACAGATTTTGTAGAGACCATTTGGGATCCCCTGTCAACCTCACAGACAAGAAGT
TTAACAGTGCACTGCAGAGTGGCTTTTGAACAGTTCGCTTCTGAAAATGAAGTTAGTAAAAATA
AACAGGATTTACTTAAATCTATTGTTGCAAGAATGAAGAAGTCAATAGAAGATGATATTTTTAT
TCCTCTATACCCAAAGAGCTCTGAAGAAGGAAAAATGTCACCACACTCCAAGTTCCAAGAAAGA
CAGTTCTGGGGAGCTCTAAAGCTCTTCCGAAATATTCTTCTTTGGAATGGCCTTCTCCCAGATG
ACACCTTGCAAGATCTGGGACTGGGGAAGCTGCTGAATCGCTACCTTATCATCTCTCTTACTAA
TGCCGTCCCTGGACCAGATGTGGTTAAAAAGTGCAGCCAGATAGCAGCATGTCTACCAGAAAGA
TGGTTTGAGAACTCTGCTATGAGGACATCAATTCCCCAGCTAGAAAACTTCATTAAGTTTTTGT
TGCAGTCTGCACAGAAATTATCCTCAAGTGAATTCAGGAATGAAGTCAGTGAAATAATTCTTAT
CCTGGTGAAGGTAAAAGCTCTGACTCAAGCCGAATCCCTCAGAGAAGAGCGTCCCCTGGAGCCC
CTCCCAGCCCAGAGTACAGGTGTTTGAGTGCGCCGTGTGGGAGTGCCCAGAGTCAAGATGACCG
TGTCACAGCCGATGCCGCCTTTGCTGGGTGCCCACTTGGGGTGTGGCCAGGCCTCCTGATGCTT
CGTAGCTGAGGGAAGTAATGCACAGCAGCAGCCGAGCTCAGTGTGCTGCTCTTTTACTCTCTCA
ATCCGGAAGGAAATGAAGCAATCTGACACACAGAAGCATGCCTGAATCAAAACCATCTTCAGCA
AACTCCAATGTTTGCAGATCAGCTAATGAGGAAGCTCTATCTCTGGATGGTTTCTTTTATCTTA
TTCTTTGGTGGGGACTCGGTCTCATTCTGAAGTGTAAGGAATTACTTATTAAATAGCTAACACA
TTTTTATACAAACTGTCCTTTCAAAATCTGTACTGACTTACTGTGTGAAATCAGTGCAAGAGAG
TGCCAGTGATCTCCAGATTTTGATTCATTGTCAATTTGTTAAAAAAAAAAAAACTTTGAAAAAA
GATTTATTTTTATATGTGTGGTCATGTATGTACCTGGGTGGGTTTAGCACTACCTCCATGTAGG
GGCCAGAGGGCATCAGGTCCCCTGGAACTGGAATCCAGGAGGTTGTGGGCCATCTAATGTGCTT
GGAACCAAACCCAGGTCCTCAGAAGAGATCTTCACCCTCCCTGTGAAGAATGAAGCTGTGGTCT
GAGTCATCTGTAAGTCCTTAAGTGAGGCTTTTTTGCTATGTTTTGTGTAACTCATGGTAGGACT
AAAAAGGCCATTGCTCTTTTAAATACAGAAATGTAAAGTATTTCTCTAATTAAGGTAGTCTGAG
GCAAGGTGATTAAGAAATTATGAACTTTTCTCAAAATGACTGTATTAATGTTCTTAAGTATATT
TGTTAAGCAACTCAATGATGATCCTGTATTTATTTTTCCGTGTTGTCACTTTAGACATTTGCTC
GTTACAAAAGCATGTGTATATGTGTGCAGAAAGTTTTGTATATAAATGGCAGAGACTTTATTTT
TGCTGTTAAAGGGCACTTTTGGAAACTG

hide sequence

RefSeq Acc Id:

XR_377475

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	81,900,617 - 81,923,474 (+)	NCBI
GRCm38	6	81,923,635 - 81,946,493 (+)	NCBI

Sequence:

show sequence

ATCTCGAGACGCGCGACTGCGCAGGCGCCGGACACCTAGCCTTAAGGAGACGCGCCAATCCTAC
TTGGAACATGGCTCTCAGGCCCCAGAGGACTTTCAGGCGGCGCCAGGTCGAGTCCAGCGATAGC
GATAGCGATAGCGACGGCGCGAAGGAGCAGAGTGCGGAGGAGCCGGCGTCTGCCGGCGGCCGAA
CAGAGGGAGCGGAGCGGCCGCGCGGGGCCCGCAGCGCCCGGGGCCGAGGTCGGGTCTGGGCGAG
TTCCCGCCGCAGCCCGGGAGCTGCTCCCCGCGGGGACGGCGGAGCAGAATGCAGAACAGCTGAG
CTCTCAACGGATGAAGAGGAAGGAACACATACCTTGACAGGAAGTAAGGGTGATCGGAGTCCGT
CCTCTGATAGCTCTTGCTCTCTGGAAGAAAGAGACGTTTCACCCATAGTTGAGATCCCCGATGC
AGCTTTTATTCAGGCAGCCCGCAGAAAACGGGAGTTGGCCAGGACCCCAGGGGACTACATTTCA
TTGGATGTAAACCACTCCTGCTCCACTTCTGACTGTAAGAGAAGCAATGAAGAGGACCCAGAGA
GCGATCCTGATGACCACGAAAAGAGAATACTGTTTACCCCAAAGCCTCAAACACTCCGGCAAAG
AATGGCTGAAGAAACGTCAATCAGGAGTGAGGAATCAAGTGAAGAGAGTCAGGAAGATGAAAAC
CAAGACATCTGGGAGCAGCAGCAGATGAGGAAAGCAGTCAGGATCCCGGCGGGACAAAATACAG
ACCTTTCCCACAGCAGTAAGTCTCAAACCCTGAAGAAGTTTGATACTTCCATTTCATTTCCACC
GGTAAATTTGGAAATTATAAAGAAACAGTTAAATAATAGATTAACATTACTACAGGAGTCTCAT
CGCTCACACCAGAGAGAATATGAAAAATATGAACAAGACATCAAGAGTTCAAAGACGGCTATCC
AGAATCTTGAGAGTGCATCAGACCATGCTCAAAACTACAGATTCTACAGGGGCATGAAAAGTTA
TGTGGAAAATATAATTGATTGTCTAAATGAAAAGATTGTCAGCATTGTGGAACTAGAATCATCC
ATGTACACGTTGCTTTTAAAACGGTCAGAAGCACTTTTGAAACGCAGGCAAGATGAATTAAAAT
GCGAATCATCATATTTGCAGCAGTTATCACGCAAAGATGAGACATCGGCAAATGGAAGCTTGGC
TGTGGATGAAAAGGATCAACGGATTTTAGAAGAGATTGAAGCTCGGAGGATGCAGAGAAGACAG
GCCAGGGAGCTCTCGGGCAGCTGTGACCATCAGGAAGGGATGTCTAGTGATGATGAGCTGTCTC
CTGCAGAGATGACTAACTTCCACAAGTGCCAAGGATTGTAAGAAAGTTTTTGAAGATGTGCATG
ATGATTTTTGTAACGTCCAGAATATTTTATTGAAATTTCAGCAGTGGCGAGAAAAGTTTCCTGA
TTCCTACTATGAAGCCTTCGTTGGTTTCTGCTTACCAAAGCTTTTAAGTCCCCTGATACGAGTT
CAGTTGCTTGACTGGAATCCTCTTAAGATGGACTCCATAGGTCTAGACAAGATGCCCT

hide sequence

Protein Sequences


Protein RefSeqs	NP_808552	(Get FASTA)	NCBI Sequence Viewer
	XP_011239693	(Get FASTA)	NCBI Sequence Viewer
	XP_030111342	(Get FASTA)	NCBI Sequence Viewer
	XP_030111343	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAC34411	(Get FASTA)	NCBI Sequence Viewer
	BAC36717	(Get FASTA)	NCBI Sequence Viewer
	BAE22958	(Get FASTA)	NCBI Sequence Viewer
	EDK99026	(Get FASTA)	NCBI Sequence Viewer
	EDK99027	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000035644
	ENSMUSP00000035644.5
	ENSMUSP00000138136.2
	ENSMUSP00000144868.2
GenBank Protein	Q8BKT3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_808552 ⟸ NM_177884

- UniProtKB:

Q8BKT3 (UniProtKB/Swiss-Prot), Q8BK44 (UniProtKB/Swiss-Prot), Q3UWF7 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MALRPQRTFRRRQVESSDSDSDSDGAKEQSAEEPASAGGRTEGAERPRGARSARGRGRVWASSR
RSPGAAPRGDGGAECRTAELSTDEEEGTHTLTGSKGDRSPSSDSSCSLEERDVSPIVEIPDAAF
IQAARRKRELARTPGDYISLDVNHSCSTSDCKRSNEEDPESDPDDHEKRILFTPKPQTLRQRMA
EETSIRSEESSEESQEDENQDIWEQQQMRKAVRIPAGQNTDLSHSSKSQTLKKFDTSISFPPVN
LEIIKKQLNNRLTLLQESHRSHQREYEKYEQDIKSSKTAIQNLESASDHAQNYRFYRGMKSYVE
NIIDCLNEKIVSIVELESSMYTLLLKRSEALLKRRQDELKCESSYLQQLSRKDETSANGSLAVD
EKDQRILEEIEARRMQRRQARELSGSCDHQEGMSSDDELSPAEMTNFHKCQGDILQDCKKVFED
VHDDFCNVQNILLKFQQWREKFPDSYYEAFVGFCLPKLLSPLIRVQLLDWNPLKMDSIGLDKMP
WFTAITEFMESSMDDIGKEDGSDKKILAAVINKTVVPRLTDFVETIWDPLSTSQTRSLTVHCRV
AFEQFASENEVSKNKQDLLKSIVARMKKSIEDDIFIPLYPKSSEEGKMSPHSKFQERQFWGALK
LFRNILLWNGLLPDDTLQDLGLGKLLNRYLIISLTNAVPGPDVVKKCSQIAACLPERWFENSAM
RTSIPQLENFIKFLLQSAQKLSSSEFRNEVSEIILILVKVKALTQAESLREERPLEPLPAQSTG
V

hide sequence

RefSeq Acc Id:

XP_011239693 ⟸ XM_011241391

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAQTEPPWKTECQRGTAFIQLDSGQGQNTDLSHSSKSQTLKKFDTSISFPPVNLEIIKKQLNNR
LTLLQESHRSHQREYEKYEQDIKSSKTAIQNLESASDHAQNYRFYRGMKSYVENIIDCLNEKIV
SIVELESSMYTLLLKRSEALLKRRQDELKCESSYLQQLSRKDETSANGSLAVDEKDQRILEEIE
ARRMQRRQARELSGSCDHQEGMSSDDELSPAEMTNFHKCQGDILQDCKKVFEDVHDDFCNVQNI
LLKFQQWREKFPDSYYEAFVGFCLPKLLSPLIRVQLLDWNPLKMDSIGLDKMPWFTAITEFMES
SMDDIGKEDGSDKKILAAVINKTVVPRLTDFVETIWDPLSTSQTRSLTVHCRVAFEQFASENEV
SKNKQDLLKSIVARMKKSIEDDIFIPLYPKSSEEGKMSPHSKFQERQFWGALKLFRNILLWNGL
LPDDTLQDLGLGKLLNRYLIISLTNAVPGPDVVKKCSQIAACLPERWFENSAMRTSIPQLENFI
KFLLQSAQKLSSSEFRNEVSEIILILVKVKALTQAESLREERPLEPLPAQSTGV

hide sequence

RefSeq Acc Id:	XP_030111342 ⟸ XM_030255482
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_030111343 ⟸ XM_030255483
- Peptide Label:	isoform X4
- UniProtKB:	S4R198 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSMUSP00000144868 ⟸ ENSMUST00000203959

Ensembl Acc Id:

ENSMUSP00000138136 ⟸ ENSMUST00000152996

Ensembl Acc Id:

ENSMUSP00000035644 ⟸ ENSMUST00000043195

Protein Domains

GCF C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8BKT3-F1-model_v2	AlphaFold	Q8BKT3	1-769	view protein structure

Promoters

RGD ID:

6840080

Promoter ID:

MM_KWN:46541

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6

Transcripts:

OTTMUST00000055969, UC009CLC.1, UC009CLE.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	81,873,431 - 81,873,931 (+)	MPROMDB

RGD ID:

6890090

Promoter ID:

EPDNEW_M8492

Type:

initiation region

Name:

Gcfc2_1

Description:

Mus musculus GC-rich sequence DNA binding factor 2 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	81,923,679 - 81,923,739	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2141656	AgrOrtholog
Ensembl Genes	ENSMUSG00000035125	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000043195	ENTREZGENE
	ENSMUST00000043195.11	UniProtKB/Swiss-Prot
	ENSMUST00000152996	ENTREZGENE
	ENSMUST00000152996.8	UniProtKB/TrEMBL
	ENSMUST00000203959.2	UniProtKB/TrEMBL
InterPro	GCFC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GCFC_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:330361	UniProtKB/Swiss-Prot
MGD	MGI:2141656	ENTREZGENE
NCBI Gene	Gcfc2	ENTREZGENE
PANTHER	INTRON LARGE COMPLEX COMPONENT GCFC2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR12214	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	GCFC	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Gcfc2	PhenoGen
UniProt	A0A0N4SUY0_MOUSE	UniProtKB/TrEMBL
	GCFC2_MOUSE	UniProtKB/Swiss-Prot
	Q3UWF7	ENTREZGENE
	Q8BK44	ENTREZGENE
	Q8BKT3	ENTREZGENE
	S4R198	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	Q3UWF7	UniProtKB/Swiss-Prot
	Q8BK44	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-08-26	Gcfc2	GC-rich sequence DNA binding factor 2	AW146020	expressed sequence AW146020	Symbol and/or name updated	27372883	PROVISIONAL
2024-08-21	AW146020	expressed sequence AW146020	Gcfc2	GC-rich sequence DNA binding factor 2	Symbol and/or name change	5135510	APPROVED
2013-01-08	Gcfc2	GC-rich sequence DNA binding factor 2	AW146020	expressed sequence AW146020	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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