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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Poisoning | | ISO | RGD:1312413 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21964422 | |
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Imported Disease Annotations - CTDTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Poisoning | | ISO | RGD:1312413 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21964422 | |
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1. | MGD and Homologene mouse data transfer |
2. | MGD data from the GO Consortium |
3. | RGD automated import pipeline |
4. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
5. | RGD automated import pipeline for gene-chemical interactions |
6. | Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6. |
PMID:9159189 | PMID:10021346 | PMID:12203715 | PMID:12477932 | PMID:12819125 | PMID:16708114 | PMID:17766470 | PMID:17855775 | PMID:17925400 | PMID:18682726 | PMID:19843512 | PMID:23117660 |
PMID:23261932 | PMID:23296090 | PMID:23485711 | PMID:24963132 | PMID:25582411 | PMID:26403541 | PMID:27206985 | PMID:27639425 |
Xirp1 (Mus musculus - house mouse) |
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XIRP1 (Homo sapiens - human) |
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Xirp1 (Rattus norvegicus - Norway rat) |
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Xirp1 (Chinchilla lanigera - long-tailed chinchilla) |
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XIRP1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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XIRP1 (Canis lupus familiaris - dog) |
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Xirp1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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XIRP1 (Sus scrofa - pig) |
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XIRP1 (Chlorocebus sabaeus - African green monkey) |
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Xirp1 (Heterocephalus glaber - naked mole-rat) |
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AF051945 |
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AI415219 |
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The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
RefSeq Transcripts | NM_011724 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_030244248 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_030244249 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_036154843 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC117245 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
AEKQ02157273 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
AF051945 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC117959 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BC117960 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BY783852 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
RefSeq Acc Id: | ENSMUST00000111635 ⟹ ENSMUSP00000107262 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000213113 ⟹ ENSMUSP00000149083 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000238557 ⟹ ENSMUSP00000158836 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_011724 ⟹ NP_035854 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030244248 ⟹ XP_030100108 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_030244249 ⟹ XP_030100109 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_036154843 ⟹ XP_036010736 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_035854 | (Get FASTA) | NCBI Sequence Viewer |
XP_030100108 | (Get FASTA) | NCBI Sequence Viewer | |
XP_030100109 | (Get FASTA) | NCBI Sequence Viewer | |
XP_036010736 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAC06023 | (Get FASTA) | NCBI Sequence Viewer |
AAI17960 | (Get FASTA) | NCBI Sequence Viewer | |
AAI17961 | (Get FASTA) | NCBI Sequence Viewer | |
O70373 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_035854 ⟸ NM_011724 |
- Sequence: |
RefSeq Acc Id: | XP_030100108 ⟸ XM_030244248 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | XP_030100109 ⟸ XM_030244249 |
- Peptide Label: | isoform X1 |
RefSeq Acc Id: | ENSMUSP00000107262 ⟸ ENSMUST00000111635 |
RefSeq Acc Id: | ENSMUSP00000158836 ⟸ ENSMUST00000238557 |
RefSeq Acc Id: | ENSMUSP00000149083 ⟸ ENSMUST00000213113 |
RefSeq Acc Id: | XP_036010736 ⟸ XM_036154843 |
- Peptide Label: | isoform X2 |
RGD ID: | 6845337 | ||||||||
Promoter ID: | MM_KWN:59156 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | Lung | ||||||||
Transcripts: | NM_001081339_XIRP1, UC009SBW.1 | ||||||||
Position: |
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RGD ID: | 8671214 | ||||||||
Promoter ID: | EPDNEW_M13638 | ||||||||
Type: | initiation region | ||||||||
Name: | Xirp1_1 | ||||||||
Description: | Mus musculus xin actin-binding repeat containing 1 , mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1333878 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000079243 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSMUSP00000107262 | ENTREZGENE, UniProtKB/TrEMBL |
ENSMUSP00000149083 | UniProtKB/TrEMBL | |
ENSMUSP00000158836 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSMUST00000111635 | ENTREZGENE, UniProtKB/TrEMBL |
ENSMUST00000213113 | UniProtKB/TrEMBL | |
ENSMUST00000238557 | UniProtKB/TrEMBL | |
InterPro | Actin-binding_Xin_repeat | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
XIRP1/XIRP2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | mmu:22437 | UniProtKB/TrEMBL |
MGD | MGI:1333878 | ENTREZGENE |
NCBI Gene | 22437 | ENTREZGENE |
PANTHER | PTHR22591 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Pfam | Xin | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PhenoGen | Xirp1 | PhenoGen |
PROSITE | XIN | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniGene | Mm.10117 | ENTREZGENE |
UniProt | A0A1L1SQJ8_MOUSE | UniProtKB/TrEMBL |
A0A571BDS0_MOUSE | UniProtKB/TrEMBL | |
E9QQ93_MOUSE | UniProtKB/TrEMBL | |
O70373 | ENTREZGENE, UniProtKB/Swiss-Prot |