RAB37 (RAB37, member RAS oncogene family) - Rat Genome Database

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Gene: RAB37 (RAB37, member RAS oncogene family) Homo sapiens
Analyze
Symbol: RAB37
Name: RAB37, member RAS oncogene family
RGD ID: 1312361
HGNC Page HGNC:30268
Description: Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in protein transport. Located in endoplasmic reticulum-Golgi intermediate compartment.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ30284; FLJ32507; RAB37, member of RAS oncogene family; Rab37-like; ras-related protein Rab-37
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,671,131 - 74,747,335 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,670,578 - 74,747,335 (+)EnsemblGRCh38hg38GRCh38
GRCh371772,667,270 - 72,743,474 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,178,865 - 70,255,069 (+)NCBINCBI36Build 36hg18NCBI36
Build 341770,178,864 - 70,255,068NCBI
Celera1769,260,244 - 69,336,655 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,076,158 - 68,153,847 (+)NCBIHuRef
CHM1_11772,731,976 - 72,808,295 (+)NCBICHM1_1
T2T-CHM13v2.01775,561,860 - 75,639,214 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10722846   PMID:12578829   PMID:12665801   PMID:14702039   PMID:15308636   PMID:15489334   PMID:16189514   PMID:16344560   PMID:18687502   PMID:19148500   PMID:20031577   PMID:21873635  
PMID:22082156   PMID:23372429   PMID:23826383   PMID:23969696   PMID:25183545   PMID:25416956   PMID:26496610   PMID:28151721   PMID:29229996   PMID:29717487   PMID:29845934   PMID:30131385  
PMID:30158579   PMID:30165196   PMID:32513696   PMID:32926650   PMID:33961781  


Genomics

Comparative Map Data
RAB37
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,671,131 - 74,747,335 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,670,578 - 74,747,335 (+)EnsemblGRCh38hg38GRCh38
GRCh371772,667,270 - 72,743,474 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,178,865 - 70,255,069 (+)NCBINCBI36Build 36hg18NCBI36
Build 341770,178,864 - 70,255,068NCBI
Celera1769,260,244 - 69,336,655 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,076,158 - 68,153,847 (+)NCBIHuRef
CHM1_11772,731,976 - 72,808,295 (+)NCBICHM1_1
T2T-CHM13v2.01775,561,860 - 75,639,214 (+)NCBIT2T-CHM13v2.0
Rab37
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,982,257 - 115,053,066 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,982,257 - 115,053,062 (+)EnsemblGRCm39 Ensembl
GRCm3811115,091,331 - 115,162,773 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,091,431 - 115,162,236 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711114,952,745 - 115,023,554 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,970,275 - 114,978,318 (+)NCBIMGSCv36mm8
Celera11126,856,382 - 126,927,459 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.59NCBI
Rab37
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,833,240 - 100,900,950 (+)NCBIGRCr8
mRatBN7.210100,334,639 - 100,401,974 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,334,216 - 100,401,474 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.010103,643,841 - 103,711,830 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,703,404 - 103,710,527 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,591,641 - 104,658,286 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1098,910,346 - 98,978,421 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Rab37
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,580,234 - 1,638,290 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,580,234 - 1,638,290 (+)NCBIChiLan1.0ChiLan1.0
RAB37
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,706,141 - 90,784,924 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,528,829 - 95,607,633 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,614,362 - 68,693,196 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,172,612 - 74,249,219 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1774,172,612 - 74,249,219 (+)Ensemblpanpan1.1panPan2
RAB37
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,680,927 - 5,736,037 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,682,466 - 5,735,320 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,360,229 - 6,415,356 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,352,862 - 6,408,027 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,352,492 - 6,407,433 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,389,639 - 6,445,069 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,500,296 - 6,555,445 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,560,664 - 6,615,810 (-)NCBIUU_Cfam_GSD_1.0
Rab37
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,293,086 - 6,356,920 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493659455,058 - 118,916 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493659455,081 - 118,873 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB37
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,484,535 - 6,494,047 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,484,535 - 6,535,665 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,473,501 - 6,548,579 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB37
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,912,050 - 46,987,174 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,913,971 - 46,922,440 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,696,572 - 17,771,874 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab37
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,554,022 - 4,611,895 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,553,690 - 4,611,895 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAB37
44 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 17q24.3-25.3(chr17:69209079-83086677)x3 copy number gain See cases [RCV000052486] Chr17:69209079..83086677 [GRCh38]
Chr17:67205220..81044553 [GRCh37]
Chr17:64716815..78637842 [NCBI36]
Chr17:17q24.3-25.3
pathogenic
GRCh38/hg38 17q23.2-25.3(chr17:36449220-83086677)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052483]|See cases [RCV000052483] Chr17:36449220..83086677 [GRCh38]
Chr17:58617905..81044553 [GRCh37]
Chr17:55972687..78637842 [NCBI36]
Chr17:17q23.2-25.3
pathogenic
GRCh38/hg38 17q25.1(chr17:73851698-74732123)x3 copy number gain See cases [RCV000053597] Chr17:73851698..74732123 [GRCh38]
Chr17:71847837..72728262 [GRCh37]
Chr17:69359432..70239857 [NCBI36]
Chr17:17q25.1
benign
NM_001006638.2(RAB37):c.-1295G>T single nucleotide variant Lung cancer [RCV000100647] Chr17:74735978 [GRCh38]
Chr17:72732117 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_139018.5(CD300LF):c.131C>T (p.Ser44Leu) single nucleotide variant Inborn genetic diseases [RCV003180486] Chr17:74704729 [GRCh38]
Chr17:72700868 [GRCh37]
Chr17:17q25.1
uncertain significance
GRCh38/hg38 17q23.1-25.1(chr17:36449220-75053130)x3 copy number gain See cases [RCV000137437] Chr17:36449220..75053130 [GRCh38]
Chr17:57595736..73049225 [GRCh37]
Chr17:54950518..70560820 [NCBI36]
Chr17:17q23.1-25.1
pathogenic
GRCh38/hg38 17q24.3-25.3(chr17:69916435-83102552)x3 copy number gain See cases [RCV000143342] Chr17:69916435..83102552 [GRCh38]
Chr17:67912576..81048189 [GRCh37]
Chr17:65424171..78653717 [NCBI36]
Chr17:17q24.3-25.3
pathogenic
NM_175738.5(RAB37):c.184-5157G>A single nucleotide variant Inborn genetic diseases [RCV003195029] Chr17:74737097 [GRCh38]
Chr17:72733236 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_139018.5(CD300LF):c.818T>C (p.Leu273Pro) single nucleotide variant Inborn genetic diseases [RCV003201035] Chr17:74695151 [GRCh38]
Chr17:72691290 [GRCh37]
Chr17:17q25.1
uncertain significance
GRCh37/hg19 17q24.2-25.3(chr17:64241326-81041938)x3 copy number gain See cases [RCV000447577] Chr17:64241326..81041938 [GRCh37]
Chr17:17q24.2-25.3
pathogenic
GRCh37/hg19 17q25.1(chr17:71940807-72667784)x3 copy number gain See cases [RCV000445893] Chr17:71940807..72667784 [GRCh37]
Chr17:17q25.1
likely benign
GRCh37/hg19 17q21.31-25.3(chr17:42580684-81085615)x3 copy number gain See cases [RCV000447823] Chr17:42580684..81085615 [GRCh37]
Chr17:17q21.31-25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938) copy number gain See cases [RCV000511439] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
NM_001006638.3(RAB37):c.101T>C (p.Leu34Pro) single nucleotide variant Inborn genetic diseases [RCV003292424] Chr17:74740775 [GRCh38]
Chr17:72736914 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_001006638.3(RAB37):c.466G>A (p.Glu156Lys) single nucleotide variant Inborn genetic diseases [RCV003248033] Chr17:74744906 [GRCh38]
Chr17:72741045 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_001006638.3(RAB37):c.398A>C (p.Gln133Pro) single nucleotide variant Inborn genetic diseases [RCV003272612] Chr17:74744339 [GRCh38]
Chr17:72740478 [GRCh37]
Chr17:17q25.1
uncertain significance
GRCh37/hg19 17p13.3-q25.3(chr17:526-81041938)x3 copy number gain See cases [RCV000512441] Chr17:526..81041938 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17q24.2-25.3(chr17:67002415-81041938)x3 copy number gain See cases [RCV000512573] Chr17:67002415..81041938 [GRCh37]
Chr17:17q24.2-25.3
pathogenic
GRCh37/hg19 17q25.1(chr17:71810700-72702515)x3 copy number gain not provided [RCV000683959] Chr17:71810700..72702515 [GRCh37]
Chr17:17q25.1
likely benign
GRCh37/hg19 17q24.1-25.3(chr17:63689671-81041938)x3 copy number gain not provided [RCV000683952] Chr17:63689671..81041938 [GRCh37]
Chr17:17q24.1-25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:8547-81060040)x3 copy number gain not provided [RCV000739324] Chr17:8547..81060040 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:7214-81058310)x3 copy number gain not provided [RCV000739320] Chr17:7214..81058310 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17p13.3-q25.3(chr17:12344-81057996)x3 copy number gain not provided [RCV000739325] Chr17:12344..81057996 [GRCh37]
Chr17:17p13.3-q25.3
pathogenic
GRCh37/hg19 17q25.1(chr17:71822155-72690918)x3 copy number gain not provided [RCV000739661] Chr17:71822155..72690918 [GRCh37]
Chr17:17q25.1
likely benign
GRCh37/hg19 17q25.1(chr17:71834001-72690918)x3 copy number gain not provided [RCV000739662] Chr17:71834001..72690918 [GRCh37]
Chr17:17q25.1
uncertain significance
GRCh37/hg19 17q25.1(chr17:71850605-72691928)x3 copy number gain not provided [RCV000739663] Chr17:71850605..72691928 [GRCh37]
Chr17:17q25.1
benign
GRCh37/hg19 17q24.1-25.2(chr17:64159738-74891024)x3 copy number gain not provided [RCV000762750] Chr17:64159738..74891024 [GRCh37]
Chr17:17q24.1-25.2
likely pathogenic
GRCh37/hg19 17q24.3-25.1(chr17:70720436-73175266) copy number gain not provided [RCV000767767] Chr17:70720436..73175266 [GRCh37]
Chr17:17q24.3-25.1
pathogenic
GRCh37/hg19 17q24.1-25.3(chr17:62778720-81041938)x3 copy number gain not provided [RCV000849900] Chr17:62778720..81041938 [GRCh37]
Chr17:17q24.1-25.3
pathogenic
GRCh37/hg19 17q25.1(chr17:71811005-72681118)x3 copy number gain not provided [RCV001006916] Chr17:71811005..72681118 [GRCh37]
Chr17:17q25.1
likely benign
GRCh37/hg19 17q25.1(chr17:71813960-72707349)x3 copy number gain not provided [RCV001829043] Chr17:71813960..72707349 [GRCh37]
Chr17:17q25.1
likely benign
NM_001006638.3(RAB37):c.377C>A (p.Thr126Asn) single nucleotide variant Inborn genetic diseases [RCV003264686] Chr17:74744318 [GRCh38]
Chr17:72740457 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_139018.5(CD300LF):c.236G>C (p.Arg79Pro) single nucleotide variant Inborn genetic diseases [RCV002683102] Chr17:74704624 [GRCh38]
Chr17:72700763 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_139018.5(CD300LF):c.172A>C (p.Ile58Leu) single nucleotide variant Inborn genetic diseases [RCV002753157] Chr17:74704688 [GRCh38]
Chr17:72700827 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_139018.5(CD300LF):c.823G>A (p.Gly275Ser) single nucleotide variant Inborn genetic diseases [RCV002816960] Chr17:74695146 [GRCh38]
Chr17:72691285 [GRCh37]
Chr17:17q25.1
likely benign
NM_139018.5(CD300LF):c.665C>T (p.Thr222Met) single nucleotide variant Inborn genetic diseases [RCV002682411] Chr17:74695777 [GRCh38]
Chr17:72691916 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_001006638.3(RAB37):c.580C>T (p.Arg194Trp) single nucleotide variant Inborn genetic diseases [RCV002687736] Chr17:74745319 [GRCh38]
Chr17:72741458 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_175738.5(RAB37):c.184-5220G>A single nucleotide variant Inborn genetic diseases [RCV002661128] Chr17:74737034 [GRCh38]
Chr17:72733173 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_139018.5(CD300LF):c.110C>T (p.Thr37Ile) single nucleotide variant Inborn genetic diseases [RCV002692514] Chr17:74704750 [GRCh38]
Chr17:72700889 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_001006638.3(RAB37):c.448G>A (p.Glu150Lys) single nucleotide variant Inborn genetic diseases [RCV002978512] Chr17:74744888 [GRCh38]
Chr17:72741027 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_139018.5(CD300LF):c.746A>G (p.Tyr249Cys) single nucleotide variant Inborn genetic diseases [RCV002767921] Chr17:74695223 [GRCh38]
Chr17:72691362 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_139018.5(CD300LF):c.604G>A (p.Asp202Asn) single nucleotide variant Inborn genetic diseases [RCV002713204] Chr17:74695838 [GRCh38]
Chr17:72691977 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_139018.5(CD300LF):c.269C>T (p.Thr90Met) single nucleotide variant Inborn genetic diseases [RCV002664791] Chr17:74704591 [GRCh38]
Chr17:72700730 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_139018.5(CD300LF):c.164G>A (p.Arg55Gln) single nucleotide variant Inborn genetic diseases [RCV002985199] Chr17:74704696 [GRCh38]
Chr17:72700835 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_175738.5(RAB37):c.184-5219G>A single nucleotide variant Inborn genetic diseases [RCV002898152] Chr17:74737035 [GRCh38]
Chr17:72733174 [GRCh37]
Chr17:17q25.1
likely benign
NM_139018.5(CD300LF):c.460A>C (p.Lys154Gln) single nucleotide variant Inborn genetic diseases [RCV002652334] Chr17:74698468 [GRCh38]
Chr17:72694607 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_001006638.3(RAB37):c.229G>A (p.Val77Met) single nucleotide variant Inborn genetic diseases [RCV003181032] Chr17:74742278 [GRCh38]
Chr17:72738417 [GRCh37]
Chr17:17q25.1
likely benign
NM_001006638.3(RAB37):c.586G>A (p.Gly196Arg) single nucleotide variant Inborn genetic diseases [RCV003197349] Chr17:74745325 [GRCh38]
Chr17:72741464 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_001006638.3(RAB37):c.590A>G (p.His197Arg) single nucleotide variant Inborn genetic diseases [RCV003188253] Chr17:74745329 [GRCh38]
Chr17:72741468 [GRCh37]
Chr17:17q25.1
likely benign
GRCh37/hg19 17q25.1(chr17:72718277-74142256) copy number gain 7q11.23 microduplication syndrome [RCV003325440] Chr17:72718277..74142256 [GRCh37]
Chr17:17q25.1
pathogenic
NM_001006638.3(RAB37):c.278G>A (p.Arg93Gln) single nucleotide variant Inborn genetic diseases [RCV003379831] Chr17:74743160 [GRCh38]
Chr17:72739299 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_139018.5(CD300LF):c.270G>T (p.Thr90=) single nucleotide variant not provided [RCV003413331] Chr17:74704590 [GRCh38]
Chr17:72700729 [GRCh37]
Chr17:17q25.1
likely benign
NM_001006638.3(RAB37):c.620G>A (p.Arg207Gln) single nucleotide variant Inborn genetic diseases [RCV003368695] Chr17:74745359 [GRCh38]
Chr17:72741498 [GRCh37]
Chr17:17q25.1
uncertain significance
NM_001006638.3(RAB37):c.186C>G (p.Thr62=) single nucleotide variant not provided [RCV003421471] Chr17:74740860 [GRCh38]
Chr17:72736999 [GRCh37]
Chr17:17q25.1
likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:12666
Count of miRNA genes:1098
Interacting mature miRNAs:1394
Transcripts:ENST00000340415, ENST00000392610, ENST00000392612, ENST00000392613, ENST00000392614, ENST00000392615, ENST00000392617, ENST00000402449, ENST00000481224, ENST00000488977, ENST00000527040, ENST00000528438, ENST00000531420, ENST00000533530, ENST00000577548
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D17S1301  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371772,680,935 - 72,681,088UniSTSGRCh37
Build 361770,192,530 - 70,192,683RGDNCBI36
Celera1769,273,914 - 69,274,067RGD
Cytogenetic Map17q25.1UniSTS
HuRef1768,089,828 - 68,089,981UniSTS
Marshfield Genetic Map17100.02UniSTS
Marshfield Genetic Map17100.02RGD
deCODE Assembly Map17113.59UniSTS
G10539  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371772,680,947 - 72,681,110UniSTSGRCh37
Build 361770,192,542 - 70,192,705RGDNCBI36
Celera1769,273,926 - 69,274,089RGD
Cytogenetic Map17q25.1UniSTS
HuRef1768,089,840 - 68,090,003UniSTS
RH92683  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371772,743,304 - 72,743,428UniSTSGRCh37
Build 361770,254,899 - 70,255,023RGDNCBI36
Celera1769,336,485 - 69,336,609RGD
Cytogenetic Map17q25.1UniSTS
HuRef1768,153,677 - 68,153,801UniSTS
GeneMap99-GB4 RH Map17471.85UniSTS
RH122307  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371772,674,147 - 72,674,439UniSTSGRCh37
Build 361770,185,742 - 70,186,034RGDNCBI36
Celera1769,267,127 - 69,267,419RGD
Cytogenetic Map17q25.1UniSTS
HuRef1768,083,041 - 68,083,333UniSTS
TNG Radiation Hybrid Map1733288.0UniSTS
D17S709  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371772,674,722 - 72,674,884UniSTSGRCh37
Build 361770,186,317 - 70,186,479RGDNCBI36
Celera1769,267,702 - 69,267,864RGD
Cytogenetic Map17q25.1UniSTS
HuRef1768,083,616 - 68,083,778UniSTS
D17S625  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371772,674,671 - 72,674,881UniSTSGRCh37
Build 361770,186,266 - 70,186,476RGDNCBI36
Celera1769,267,651 - 69,267,861RGD
Cytogenetic Map17q25.1UniSTS
HuRef1768,083,565 - 68,083,775UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 129 673 57 36 1262 36 3 17 725 29 57 132 1
Low 2238 1858 1521 573 646 415 3216 1455 2837 320 1159 1232 160 1157 1864 1 1
Below cutoff 60 457 141 14 30 12 1091 711 131 58 211 204 12 1 46 924 2 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001006638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001163989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001163990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001330471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC016888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC064805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK057069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK098068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK127073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK303442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX236082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA164538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HF584406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF456316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000340415   ⟹   ENSP00000341354
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,670,578 - 74,747,334 (+)Ensembl
RefSeq Acc Id: ENST00000392610   ⟹   ENSP00000376387
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,737,232 - 74,747,335 (+)Ensembl
RefSeq Acc Id: ENST00000392612   ⟹   ENSP00000376388
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,737,230 - 74,747,335 (+)Ensembl
RefSeq Acc Id: ENST00000392613   ⟹   ENSP00000376389
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,737,256 - 74,747,335 (+)Ensembl
RefSeq Acc Id: ENST00000392614   ⟹   ENSP00000376390
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,736,917 - 74,747,335 (+)Ensembl
RefSeq Acc Id: ENST00000392615   ⟹   ENSP00000376391
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,736,820 - 74,747,300 (+)Ensembl
RefSeq Acc Id: ENST00000392617
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,671,180 - 74,747,335 (+)Ensembl
RefSeq Acc Id: ENST00000402449   ⟹   ENSP00000383934
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,671,141 - 74,745,874 (+)Ensembl
RefSeq Acc Id: ENST00000481224   ⟹   ENSP00000436563
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,737,271 - 74,747,335 (+)Ensembl
RefSeq Acc Id: ENST00000488977
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,744,841 - 74,747,334 (+)Ensembl
RefSeq Acc Id: ENST00000527040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,737,221 - 74,744,559 (+)Ensembl
RefSeq Acc Id: ENST00000528438   ⟹   ENSP00000432086
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,736,598 - 74,746,192 (+)Ensembl
RefSeq Acc Id: ENST00000531420
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,744,858 - 74,745,794 (+)Ensembl
RefSeq Acc Id: ENST00000533530
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,737,219 - 74,744,465 (+)Ensembl
RefSeq Acc Id: ENST00000577548
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,737,221 - 74,745,028 (+)Ensembl
RefSeq Acc Id: ENST00000613645   ⟹   ENSP00000483155
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1774,737,271 - 74,747,334 (+)Ensembl
RefSeq Acc Id: NM_001006638   ⟹   NP_001006639
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381774,737,256 - 74,747,335 (+)NCBI
GRCh371772,667,256 - 72,743,474 (+)RGD
GRCh371772,667,256 - 72,743,474 (+)NCBI
Build 361770,244,956 - 70,254,394 (+)NCBI Archive
Celera1769,260,244 - 69,336,655 (+)RGD
HuRef1768,076,158 - 68,153,847 (+)ENTREZGENE
CHM1_11772,798,176 - 72,808,295 (+)NCBI
T2T-CHM13v2.01775,629,134 - 75,639,214 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001163989   ⟹   NP_001157461
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381774,736,788 - 74,747,335 (+)NCBI
GRCh371772,667,256 - 72,743,474 (+)RGD
GRCh371772,667,256 - 72,743,474 (+)NCBI
Celera1769,260,244 - 69,336,655 (+)RGD
HuRef1768,076,158 - 68,153,847 (+)ENTREZGENE
CHM1_11772,797,779 - 72,808,295 (+)NCBI
T2T-CHM13v2.01775,628,666 - 75,639,214 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001163990   ⟹   NP_001157462
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381774,737,256 - 74,747,335 (+)NCBI
GRCh371772,667,256 - 72,743,474 (+)RGD
Celera1769,260,244 - 69,336,655 (+)RGD
HuRef1768,076,158 - 68,153,847 (+)ENTREZGENE
CHM1_11772,798,176 - 72,808,295 (+)NCBI
T2T-CHM13v2.01775,629,134 - 75,639,214 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001330471   ⟹   NP_001317400
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381774,736,560 - 74,747,335 (+)NCBI
T2T-CHM13v2.01775,628,438 - 75,639,214 (+)NCBI
Sequence:
RefSeq Acc Id: NM_175738   ⟹   NP_783865
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381774,671,131 - 74,747,335 (+)NCBI
GRCh371772,667,256 - 72,743,474 (+)RGD
GRCh371772,667,256 - 72,743,474 (+)NCBI
Build 361770,178,865 - 70,255,069 (+)NCBI Archive
Celera1769,260,244 - 69,336,655 (+)RGD
HuRef1768,076,158 - 68,153,847 (+)ENTREZGENE
CHM1_11772,731,976 - 72,808,295 (+)NCBI
T2T-CHM13v2.01775,561,860 - 75,639,214 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001006639 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157461 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157462 (Get FASTA)   NCBI Sequence Viewer  
  NP_001317400 (Get FASTA)   NCBI Sequence Viewer  
  NP_783865 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH16615 (Get FASTA)   NCBI Sequence Viewer  
  AAH40547 (Get FASTA)   NCBI Sequence Viewer  
  BAC05227 (Get FASTA)   NCBI Sequence Viewer  
  BAF82891 (Get FASTA)   NCBI Sequence Viewer  
  BAG51433 (Get FASTA)   NCBI Sequence Viewer  
  BAG51857 (Get FASTA)   NCBI Sequence Viewer  
  BAG54434 (Get FASTA)   NCBI Sequence Viewer  
  BAH12246 (Get FASTA)   NCBI Sequence Viewer  
  BAH12272 (Get FASTA)   NCBI Sequence Viewer  
  BAH12707 (Get FASTA)   NCBI Sequence Viewer  
  BAH13962 (Get FASTA)   NCBI Sequence Viewer  
  CAC88255 (Get FASTA)   NCBI Sequence Viewer  
  CCQ43903 (Get FASTA)   NCBI Sequence Viewer  
  EAW89177 (Get FASTA)   NCBI Sequence Viewer  
  EAW89178 (Get FASTA)   NCBI Sequence Viewer  
  EAW89179 (Get FASTA)   NCBI Sequence Viewer  
  EAW89180 (Get FASTA)   NCBI Sequence Viewer  
  EAW89181 (Get FASTA)   NCBI Sequence Viewer  
  EAW89182 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000341354.3
  ENSP00000376387.1
  ENSP00000376388
  ENSP00000376388.3
  ENSP00000376389
  ENSP00000376389.5
  ENSP00000376390
  ENSP00000376390.5
  ENSP00000376391.5
  ENSP00000383934
  ENSP00000383934.4
  ENSP00000432086
  ENSP00000432086.1
  ENSP00000436563.1
  ENSP00000483155.1
GenBank Protein Q96AX2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_783865   ⟸   NM_175738
- Peptide Label: isoform 3
- UniProtKB: A8MSP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157461   ⟸   NM_001163989
- Peptide Label: isoform 4
- UniProtKB: A0A9H3ZVF6 (UniProtKB/TrEMBL),   A8MTC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001006639   ⟸   NM_001006638
- Peptide Label: isoform 2
- UniProtKB: A8MYT0 (UniProtKB/Swiss-Prot),   A8MXF5 (UniProtKB/Swiss-Prot),   Q8IWA7 (UniProtKB/Swiss-Prot),   Q96AX2 (UniProtKB/Swiss-Prot),   A8MTC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157462   ⟸   NM_001163990
- Peptide Label: isoform 5
- UniProtKB: A8MTC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001317400   ⟸   NM_001330471
- Peptide Label: isoform 6
- UniProtKB: B7Z3L0 (UniProtKB/TrEMBL),   A8MTC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000383934   ⟸   ENST00000402449
RefSeq Acc Id: ENSP00000436563   ⟸   ENST00000481224
RefSeq Acc Id: ENSP00000483155   ⟸   ENST00000613645
RefSeq Acc Id: ENSP00000376391   ⟸   ENST00000392615
RefSeq Acc Id: ENSP00000376388   ⟸   ENST00000392612
RefSeq Acc Id: ENSP00000376390   ⟸   ENST00000392614
RefSeq Acc Id: ENSP00000376389   ⟸   ENST00000392613
RefSeq Acc Id: ENSP00000376387   ⟸   ENST00000392610
RefSeq Acc Id: ENSP00000341354   ⟸   ENST00000340415
RefSeq Acc Id: ENSP00000432086   ⟸   ENST00000528438

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96AX2-F1-model_v2 AlphaFold Q96AX2 1-223 view protein structure

Promoters
RGD ID:6794467
Promoter ID:HG_KWN:27057
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   Lymphoblastoid,   NB4
Transcripts:ENST00000392610,   ENST00000392612,   ENST00000392614,   ENST00000392615,   ENST00000402449,   OTTHUMT00000258872,   UC002JLL.2
Position:
Human AssemblyChrPosition (strand)Source
Build 361770,244,491 - 70,245,062 (+)MPROMDB
RGD ID:6794465
Promoter ID:HG_KWN:27058
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour
Transcripts:OTTHUMT00000258880
Position:
Human AssemblyChrPosition (strand)Source
Build 361770,252,141 - 70,252,641 (+)MPROMDB
RGD ID:7236223
Promoter ID:EPDNEW_H23857
Type:initiation region
Name:RAB37_1
Description:RAB37, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381774,737,256 - 74,737,316EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:30268 AgrOrtholog
COSMIC RAB37 COSMIC
Ensembl Genes ENSG00000172794 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000340415.7 UniProtKB/TrEMBL
  ENST00000392610.5 UniProtKB/TrEMBL
  ENST00000392612 ENTREZGENE
  ENST00000392612.7 UniProtKB/Swiss-Prot
  ENST00000392613 ENTREZGENE
  ENST00000392613.10 UniProtKB/Swiss-Prot
  ENST00000392614 ENTREZGENE
  ENST00000392614.8 UniProtKB/TrEMBL
  ENST00000392615.9 UniProtKB/TrEMBL
  ENST00000402449 ENTREZGENE
  ENST00000402449.8 UniProtKB/Swiss-Prot
  ENST00000481224.5 UniProtKB/Swiss-Prot
  ENST00000528438 ENTREZGENE
  ENST00000528438.5 UniProtKB/TrEMBL
  ENST00000613645.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000172794 GTEx
HGNC ID HGNC:30268 ENTREZGENE
Human Proteome Map RAB37 Human Proteome Map
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:326624 UniProtKB/Swiss-Prot
NCBI Gene 326624 ENTREZGENE
OMIM 609956 OMIM
PANTHER IP08727P-RELATED UniProtKB/TrEMBL
  LD44762P UniProtKB/TrEMBL
  PTHR47978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-37 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134901093 PharmGKB
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART ARF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A9H3ZVF6 ENTREZGENE, UniProtKB/TrEMBL
  A8MSP2 ENTREZGENE, UniProtKB/TrEMBL
  A8MTC6 ENTREZGENE, UniProtKB/TrEMBL
  A8MUU7_HUMAN UniProtKB/TrEMBL
  A8MXF5 ENTREZGENE
  A8MYT0 ENTREZGENE
  A8MZI4_HUMAN UniProtKB/TrEMBL
  B3KPZ5_HUMAN UniProtKB/TrEMBL
  B7Z3L0 ENTREZGENE, UniProtKB/TrEMBL
  L8EBG4_HUMAN UniProtKB/TrEMBL
  Q8IWA7 ENTREZGENE
  Q96AX2 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A8MXF5 UniProtKB/Swiss-Prot
  A8MYT0 UniProtKB/Swiss-Prot
  Q8IWA7 UniProtKB/Swiss-Prot