Fnip1 (folliculin interacting protein 1) - Rat Genome Database

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Gene: Fnip1 (folliculin interacting protein 1) Mus musculus
Analyze
Symbol: Fnip1
Name: folliculin interacting protein 1
RGD ID: 1312177
MGI Page MGI
Description: Predicted to enable several functions, including ATPase inhibitor activity; enzyme activator activity; and protein-folding chaperone binding activity. Acts upstream of or within with a positive effect on negative regulation of cell population proliferation. Acts upstream of or within several processes, including immature B cell differentiation; negative regulation of TOR signaling; and positive regulation of B cell apoptotic process. Located in cytoplasm. Human ortholog(s) of this gene implicated in immunodeficiency 93. Orthologous to human FNIP1 (folliculin interacting protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A730024A03Rik; AI838773; AW557298; folliculin-interacting protein 1; KIAA1961; MGC100017
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,328,071 - 54,409,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,329,025 - 54,409,061 (+)EnsemblGRCm39 Ensembl
GRCm381154,438,107 - 54,518,241 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,438,199 - 54,518,235 (+)EnsemblGRCm38mm10GRCm38
MGSCv371154,251,681 - 54,331,743 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,281,612 - 54,361,659 (+)NCBIMGSCv36mm8
Celera1159,025,781 - 59,105,810 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
14-Deoxy-11,12-didehydroandrographolide  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2-hydroxypropanoic acid  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
4,4'-sulfonyldiphenol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP)
alpha-pinene  (ISO)
amitrole  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
crocidolite asbestos  (EXP,ISO)
cyclosporin A  (ISO)
DDE  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
diclofenac  (EXP)
dorsomorphin  (ISO)
ethyl methanesulfonate  (ISO)
fluoxetine  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
GSK-J4  (ISO)
leflunomide  (ISO)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
miconazole  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
ozone  (ISO)
paracetamol  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
rac-lactic acid  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
tetrachloroethene  (EXP)
thioacetamide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA,ISO)
cytosol  (ISO,ISS)
lysosomal membrane  (ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal autophagy  (IAGP)
abnormal B cell differentiation  (IEA)
abnormal B cell physiology  (IAGP)
abnormal bone marrow cell number  (IAGP)
abnormal cecum morphology  (IEA)
abnormal heart morphology  (IEA)
abnormal inspiratory capacity  (IEA)
abnormal mammary gland morphology  (IEA)
abnormal mitochondrial physiology  (IAGP)
abnormal muscle morphology  (IAGP)
abnormal muscle physiology  (IAGP)
abnormal pancreas morphology  (IEA)
abnormal skeletal muscle morphology  (IAGP)
abnormal spine curvature  (IEA)
abnormal spleen morphology  (IEA)
abnormal splenocyte morphology  (IAGP)
abnormal thymus morphology  (IEA)
absent B cells  (IAGP)
absent B-2 B cells  (IAGP)
arrested B cell differentiation  (IAGP)
cardiac hypertrophy  (IAGP)
cardiomyopathy  (IAGP)
decreased airway resistance  (IEA)
decreased B cell number  (IAGP)
decreased B-1 B cell number  (IAGP)
decreased body weight  (IEA)
decreased grip strength  (IEA)
decreased heart rate  (IEA)
decreased IgE level  (IAGP)
decreased IgG level  (IAGP)
decreased IgG1 level  (IAGP)
decreased IgG2a level  (IAGP)
decreased IgM level  (IAGP)
decreased locomotor activity  (IEA)
decreased lung elastance  (IEA)
decreased lung tissue damping  (IEA)
decreased lymphocyte cell number  (IEA)
decreased marginal zone B cell number  (IAGP)
decreased mature B cell number  (IAGP)
decreased pre-B cell number  (IAGP)
decreased red blood cell distribution width  (IEA)
decreased respiratory quotient  (IEA)
decreased spleen weight  (IEA)
decreased startle reflex  (IEA)
decreased transitional stage B cell number  (IAGP)
dilated aorta  (IEA)
dilated heart left ventricle  (IEA)
enhanced autophagy  (IAGP)
enlarged cecum  (IEA)
enlarged heart  (IAGP)
enlarged kidney  (IAGP)
enlarged thymus  (IEA)
impaired hematopoiesis  (IAGP)
improved glucose tolerance  (IEA)
increased B cell apoptosis  (IAGP)
increased B cell number  (IAGP)
increased B-1 B cell number  (IEA)
increased cardiac muscle contractility  (IEA)
increased cardiac muscle glycogen level  (IAGP)
increased cardiac stroke volume  (IEA)
increased CD4-positive, alpha-beta T cell number  (IEA)
increased circulating iron level  (IEA)
increased fasting circulating glucose level  (IEA)
increased freezing behavior  (IEA)
increased heart left ventricle size  (IEA)
increased heart weight  (IEA)
increased immature B cell number  (IAGP)
increased kidney tumor incidence  (IAGP)
increased liver glycogen level  (IAGP)
increased liver weight  (IEA)
increased lung compliance  (IEA)
increased neutrophil cell number  (IEA)
increased pro-B cell number  (IAGP)
increased single-positive T cell number  (IEA)
increased T cell number  (IEA)
increased thigmotaxis  (IEA)
kidney cyst  (IAGP)
polycystic kidney  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
premature death  (IAGP)
prolonged QRS complex duration  (IAGP)
shortened PR interval  (IAGP)
small spleen  (IAGP)
small thymus  (IEA)
thick ventricular wall  (IEA)
References

References - curated
# Reference Title Reference Citation
1. Amino Acid Sensing by mTORC1: Intracellular Transporters Mark the Spot. Goberdhan DC, etal., Cell Metab. 2016 Apr 12;23(4):580-9. doi: 10.1016/j.cmet.2016.03.013.
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12693553   PMID:16141072  
PMID:16141073   PMID:18403135   PMID:21873635   PMID:22608497   PMID:22709692   PMID:23582324   PMID:24081491   PMID:24785297   PMID:25548157   PMID:25775561   PMID:27303042   PMID:27506764  
PMID:28363698   PMID:29097735   PMID:29897930   PMID:31676673   PMID:32325033   PMID:33780446   PMID:34562363   PMID:35412553   PMID:36794754   PMID:37932296   PMID:38324677   PMID:38838134  


Genomics

Comparative Map Data
Fnip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391154,328,071 - 54,409,067 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1154,329,025 - 54,409,061 (+)EnsemblGRCm39 Ensembl
GRCm381154,438,107 - 54,518,241 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1154,438,199 - 54,518,235 (+)EnsemblGRCm38mm10GRCm38
MGSCv371154,251,681 - 54,331,743 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361154,281,612 - 54,361,659 (+)NCBIMGSCv36mm8
Celera1159,025,781 - 59,105,810 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.13NCBI
FNIP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385131,641,714 - 131,797,017 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5131,641,714 - 131,797,017 (-)EnsemblGRCh38hg38GRCh38
GRCh375130,977,407 - 131,132,710 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365131,005,306 - 131,160,655 (-)NCBINCBI36Build 36hg18NCBI36
Celera5127,107,692 - 127,262,904 (-)NCBICelera
Cytogenetic Map5q31.1NCBI
HuRef5126,169,994 - 126,325,270 (-)NCBIHuRef
CHM1_15130,410,265 - 130,565,793 (-)NCBICHM1_1
T2T-CHM13v2.05132,161,677 - 132,316,880 (-)NCBIT2T-CHM13v2.0
Fnip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81039,068,432 - 39,151,552 (+)NCBIGRCr8
mRatBN7.21038,567,728 - 38,650,824 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1038,567,729 - 38,650,824 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1043,253,258 - 43,336,564 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01042,743,339 - 42,826,641 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01038,247,053 - 38,330,353 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01039,786,687 - 39,870,188 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01039,559,751 - 39,642,936 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41039,922,276 - 39,928,131 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1037,908,242 - 37,991,313 (+)NCBICelera
Cytogenetic Map10q22NCBI
Fnip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554083,117,277 - 3,238,223 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554083,117,258 - 3,238,223 (-)NCBIChiLan1.0ChiLan1.0
FNIP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24126,966,205 - 127,114,876 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15125,105,770 - 125,254,344 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05127,070,906 - 127,219,548 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15133,235,501 - 133,384,218 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5133,235,501 - 133,384,218 (-)Ensemblpanpan1.1panPan2
FNIP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11119,979,294 - 20,134,341 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1119,979,163 - 20,134,229 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,775,252 - 18,930,199 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01120,756,596 - 20,912,040 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1120,757,010 - 20,911,984 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11119,484,212 - 19,639,355 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01119,331,828 - 19,486,818 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01119,972,971 - 20,128,177 (-)NCBIUU_Cfam_GSD_1.0
Fnip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213116,326,366 - 116,425,408 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366473,329,103 - 3,428,242 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366473,329,097 - 3,428,170 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FNIP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2133,957,553 - 134,093,413 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12133,958,112 - 134,093,408 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22139,275,935 - 139,352,641 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FNIP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12334,443,171 - 34,637,797 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2334,480,901 - 34,637,662 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603443,322,684 - 43,488,910 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fnip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473340,263,898 - 40,393,690 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473340,263,760 - 40,396,183 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fnip1
2527 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:849
Count of miRNA genes:444
Interacting mature miRNAs:563
Transcripts:ENSMUST00000046835, ENSMUST00000143650
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse

Markers in Region
AW557298  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,518,060 - 54,518,203UniSTSGRCm38
MGSCv371154,331,562 - 54,331,705UniSTSGRCm37
Celera1159,105,629 - 59,105,772UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11740.27UniSTS
UniSTS:236581  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,516,586 - 54,516,800UniSTSGRCm38
MGSCv371154,330,088 - 54,330,302UniSTSGRCm37
Celera1159,104,159 - 59,104,373UniSTS
Cytogenetic Map11B1.3UniSTS
AI838773  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381154,518,060 - 54,518,205UniSTSGRCm38
MGSCv371154,331,562 - 54,331,707UniSTSGRCm37
Celera1159,105,629 - 59,105,774UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11740.82UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000046835   ⟹   ENSMUSP00000049026
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,329,025 - 54,409,061 (+)Ensembl
GRCm38.p6 Ensembl1154,438,199 - 54,518,235 (+)Ensembl
Ensembl Acc Id: ENSMUST00000143650   ⟹   ENSMUSP00000121399
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1154,355,386 - 54,393,531 (+)Ensembl
GRCm38.p6 Ensembl1154,464,560 - 54,502,705 (+)Ensembl
RefSeq Acc Id: NM_173753   ⟹   NP_776114
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,329,005 - 54,409,067 (+)NCBI
GRCm381154,438,179 - 54,518,241 (+)NCBI
MGSCv371154,251,681 - 54,331,743 (+)RGD
Celera1159,025,781 - 59,105,810 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532847   ⟹   XP_006532910
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,328,071 - 54,409,062 (+)NCBI
GRCm381154,438,145 - 54,518,236 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532848   ⟹   XP_006532911
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,329,130 - 54,409,062 (+)NCBI
GRCm381154,438,314 - 54,518,236 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006532849   ⟹   XP_006532912
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391154,328,071 - 54,409,062 (+)NCBI
GRCm381154,438,107 - 54,518,236 (+)NCBI
Sequence:
RefSeq Acc Id: NP_776114   ⟸   NM_173753
- UniProtKB: Q80T72 (UniProtKB/Swiss-Prot),   Q8BQM0 (UniProtKB/Swiss-Prot),   Q68FD7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006532912   ⟸   XM_006532849
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006532910   ⟸   XM_006532847
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006532911   ⟸   XM_006532848
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSMUSP00000049026   ⟸   ENSMUST00000046835
Ensembl Acc Id: ENSMUSP00000121399   ⟸   ENSMUST00000143650
Protein Domains
cDENN FNIP1/2-type   dDENN FNIP1/2-type   UDENN FNIP1/2-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FD7-F1-model_v2 AlphaFold Q68FD7 1-1165 view protein structure

Promoters
RGD ID:6820891
Promoter ID:MM_KWN:7445
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_173753,   NM_173753_FNIP1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361154,251,316 - 54,252,002 (+)MPROMDB
RGD ID:8674660
Promoter ID:EPDNEW_M15361
Type:multiple initiation site
Name:Fnip1_1
Description:Mus musculus folliculin interacting protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381154,438,198 - 54,438,258EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444668 AgrOrtholog
Ensembl Genes ENSMUSG00000035992 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000046835 ENTREZGENE
  ENSMUST00000046835.14 UniProtKB/Swiss-Prot
InterPro DENN_FNIP1/2 UniProtKB/Swiss-Prot
  FNIP_C_dom UniProtKB/Swiss-Prot
  FNIP_fam UniProtKB/Swiss-Prot
  FNIP_mid_dom UniProtKB/Swiss-Prot
  FNIP_N_dom UniProtKB/Swiss-Prot
KEGG Report mmu:216742 UniProtKB/Swiss-Prot
MGD MGI:2444668 ENTREZGENE
NCBI Gene 216742 ENTREZGENE
PANTHER FOLLICULIN-INTERACTING PROTEIN 1 UniProtKB/Swiss-Prot
  UNCHARACTERIZED UniProtKB/Swiss-Prot
Pfam FNIP_C UniProtKB/Swiss-Prot
  FNIP_M UniProtKB/Swiss-Prot
  FNIP_N UniProtKB/Swiss-Prot
PhenoGen Fnip1 PhenoGen
PRINTS FOLLICULNIP1 UniProtKB/Swiss-Prot
PROSITE DENN_FNIP12 UniProtKB/Swiss-Prot
UniProt F6RJ64_MOUSE UniProtKB/TrEMBL
  FNIP1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q80T72 ENTREZGENE
  Q8BQM0 ENTREZGENE
UniProt Secondary Q80T72 UniProtKB/Swiss-Prot
  Q8BQM0 UniProtKB/Swiss-Prot