2700097O09Rik (RIKEN cDNA 2700097O09 gene) - Rat Genome Database

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Gene: 2700097O09Rik (RIKEN cDNA 2700097O09 gene) Mus musculus
Analyze
No known orthologs.
Symbol: 2700097O09Rik
Name: RIKEN cDNA 2700097O09 gene
RGD ID: 1312169
MGI Page MGI
Description: Predicted to enable methyltransferase activity. Is expressed in several structures, including adipose tissue; alimentary system; genitourinary system; immune system; and nervous system.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AW552125; hypothetical protein LOC72658; uncharacterized protein LOC72658
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391255,092,446 - 55,127,256 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1255,092,446 - 55,126,895 (-)EnsemblGRCm39 Ensembl
GRCm381255,045,661 - 55,080,234 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1255,045,661 - 55,080,110 (-)EnsemblGRCm38mm10GRCm38
MGSCv371256,146,648 - 56,181,097 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361255,963,791 - 55,998,240 (-)NCBIMGSCv36mm8
Celera1256,335,775 - 56,370,755 (-)NCBICelera
Cytogenetic Map12C1NCBI
cM Map1223.85NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:16141072  
PMID:16141073   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24194600   PMID:26839965   PMID:27626380  


Genomics

Variants

.
Variants in 2700097O09Rik
21 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:161
Count of miRNA genes:146
Interacting mature miRNAs:155
Transcripts:ENSMUST00000021406, ENSMUST00000136281, ENSMUST00000156852
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1300636Gct2_mgranulosa cell tumorigenesis 2 (mouse)Not determined122916068563160884Mouse
1302172Skts5_mskin tumor susceptibility 5 (mouse)Not determined122214886656149016Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
4141843Moen3_mmodifier of engrailed QTL 3 (mouse)Not determined122980158463801733Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
14747008Mancz10_mmandible centroid size 10 (mouse)122986352263863522Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
10402492Dipa8_mdrug induced psychomotor activation 8 (mouse)Not determined123493387268934019Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
12904004Opfaq11_mopen field activity QTL 11 (mouse)125315562457276756Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
1301989Hdlq18_mHDL QTL 18 (mouse)Not determined122916068563160884Mouse
1300818Bbaa10_mB.burgdorferi-associated arthritis 10 (mouse)Not determined123509100465511019Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
12903999Opfaq8_mopen field activity QTL 8 (mouse)125490765357870585Mouse

Markers in Region
fb68e12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Celera1256,340,069 - 56,340,194UniSTS
AW552125  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381255,045,808 - 55,045,942UniSTSGRCm38
MGSCv371256,146,795 - 56,146,929UniSTSGRCm37
Celera1256,335,922 - 56,336,056UniSTS
Cytogenetic Map12C1UniSTS
Whitehead/MRC_RH12564.75UniSTS
UniSTS:236846  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381620,721,939 - 20,722,146UniSTSGRCm38
GRCm381255,067,630 - 55,067,837UniSTSGRCm38
MGSCv371620,722,012 - 20,722,219UniSTSGRCm37
MGSCv371256,168,617 - 56,168,824UniSTSGRCm37
Celera1621,287,293 - 21,287,500UniSTS
Celera1256,358,230 - 56,358,437UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map16B1UniSTS
UniSTS:236847  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381620,718,891 - 20,719,081UniSTSGRCm38
GRCm381255,067,954 - 55,068,061UniSTSGRCm38
MGSCv371620,718,964 - 20,719,154UniSTSGRCm37
MGSCv371256,168,941 - 56,169,048UniSTSGRCm37
Celera1621,284,245 - 21,284,435UniSTS
Celera1256,358,554 - 56,358,661UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map16B1UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000021406   ⟹   ENSMUSP00000021406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,092,446 - 55,126,895 (-)Ensembl
GRCm38.p6 Ensembl1255,045,661 - 55,080,110 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136281
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,092,461 - 55,100,886 (-)Ensembl
GRCm38.p6 Ensembl1255,045,676 - 55,054,101 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156852
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,100,539 - 55,126,893 (-)Ensembl
GRCm38.p6 Ensembl1255,053,754 - 55,080,108 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222572
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1255,100,095 - 55,126,889 (-)Ensembl
GRCm38.p6 Ensembl1255,053,310 - 55,080,104 (-)Ensembl
RefSeq Acc Id: NM_028314   ⟹   NP_082590
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,092,446 - 55,126,895 (-)NCBI
GRCm381255,045,661 - 55,080,110 (-)NCBI
MGSCv371256,146,648 - 56,181,097 (-)RGD
Celera1256,335,775 - 56,370,755 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_030764
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,092,446 - 55,126,895 (-)NCBI
GRCm381255,045,661 - 55,080,110 (-)NCBI
MGSCv371256,146,648 - 56,181,097 (-)RGD
Celera1256,335,775 - 56,370,755 (-)RGD
cM Map12 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_155260
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,092,446 - 55,126,895 (-)NCBI
GRCm381255,045,661 - 55,080,110 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244186   ⟹   XP_011242488
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,092,450 - 55,110,191 (-)NCBI
GRCm381255,045,665 - 55,063,408 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937547
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,092,450 - 55,127,001 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937548
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391255,092,450 - 55,127,256 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_082590 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242488 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH56967 (Get FASTA)   NCBI Sequence Viewer  
  BAB28362 (Get FASTA)   NCBI Sequence Viewer  
  BAC37617 (Get FASTA)   NCBI Sequence Viewer  
  EDL36737 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000021406
  ENSMUSP00000021406.6
RefSeq Acc Id: NP_082590   ⟸   NM_028314
- UniProtKB: Q6PGK3 (UniProtKB/TrEMBL),   Q9CZH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242488   ⟸   XM_011244186
- Peptide Label: isoform X1
- UniProtKB: Q9CZH1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000021406   ⟸   ENSMUST00000021406

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PGK3-F1-model_v2 AlphaFold Q6PGK3 1-301 view protein structure

Promoters
RGD ID:8678282
Promoter ID:EPDNEW_M17172
Type:initiation region
Name:2700097O09Rik_1
Description:Mus musculus RIKEN cDNA 2700097O09 gene , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381255,080,115 - 55,080,175EPDNEW
RGD ID:6823461
Promoter ID:MM_KWN:11666
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000021407,   NM_011899,   NM_028314,   NR_030764,   UC007NOE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361256,180,996 - 56,181,537 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919908 AgrOrtholog
Ensembl Genes ENSMUSG00000062198 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021406 ENTREZGENE
  ENSMUST00000021406.6 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
InterPro Arsenite_MeTrfase-like UniProtKB/TrEMBL
  SAM-dependent_MTases-like UniProtKB/TrEMBL
KEGG Report mmu:72658 UniProtKB/TrEMBL
MGD MGI:1919908 ENTREZGENE
NCBI Gene 72658 ENTREZGENE
PANTHER PTHR43675 UniProtKB/TrEMBL
  RIKEN CDNA 2700097O09 GENE UniProtKB/TrEMBL
PhenoGen 2700097O09Rik PhenoGen
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt Q6PGK3 ENTREZGENE, UniProtKB/TrEMBL
  Q8C576_MOUSE UniProtKB/TrEMBL
  Q9CZH1 ENTREZGENE, UniProtKB/TrEMBL