Rnf150 (ring finger protein 150) - Rat Genome Database
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Gene: Rnf150 (ring finger protein 150) Mus musculus
Analyze
Symbol: Rnf150
Name: ring finger protein 150
RGD ID: 1312088
MGI Page MGI
Description: Predicted to have ubiquitin protein ligase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to localize to cytoplasm. Is expressed in cranial ganglion; dorsal root ganglion; medulla oblongata basal plate mantle layer; and spinal cord mantle layer. Orthologous to human RNF150 (ring finger protein 150); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; methotrexate.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: A630007N06Rik; C030044C12Rik; Greu; Greul5; KIAA1214; mKIAA1214; RIKEN cDNA C030044C12 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39883,589,889 - 83,817,900 (+)NCBIGRCm39mm39
GRCm38882,863,266 - 83,091,271 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl882,863,356 - 83,091,268 (+)EnsemblGRCm38mm10GRCm38
MGSCv37885,387,255 - 85,615,170 (+)NCBIGRCm37mm9NCBIm37
MGSCv36885,742,822 - 85,974,276 (+)NCBImm8
Celera887,238,149 - 87,365,916 (+)NCBICelera
Cytogenetic Map8C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12435366   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
Rnf150
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39883,589,889 - 83,817,900 (+)NCBIGRCm39mm39
GRCm38882,863,266 - 83,091,271 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl882,863,356 - 83,091,268 (+)EnsemblGRCm38mm10GRCm38
MGSCv37885,387,255 - 85,615,170 (+)NCBIGRCm37mm9NCBIm37
MGSCv36885,742,822 - 85,974,276 (+)NCBImm8
Celera887,238,149 - 87,365,916 (+)NCBICelera
Cytogenetic Map8C2NCBI
RNF150
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl4140,859,807 - 141,212,877 (-)EnsemblGRCh38hg38GRCh38
GRCh384140,859,807 - 141,212,858 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh374141,786,708 - 142,054,630 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364142,006,175 - 142,274,066 (-)NCBINCBI36hg18NCBI36
Celera4139,117,485 - 139,385,356 (-)NCBI
Cytogenetic Map4q31.21NCBI
HuRef4137,516,392 - 137,784,285 (-)NCBIHuRef
CHM1_14141,763,725 - 142,032,048 (-)NCBICHM1_1
Rnf150
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01924,044,210 - 24,264,508 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1924,044,103 - 24,265,444 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01935,023,098 - 35,245,889 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41926,737,910 - 26,962,470 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11926,966,663 - 26,967,290 (-)NCBI
Celera1924,548,378 - 24,768,444 (-)NCBICelera
Cytogenetic Map19q11NCBI
Rnf150
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554712,027,027 - 2,252,734 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554712,026,779 - 2,255,816 (+)NCBIChiLan1.0ChiLan1.0
RNF150
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14144,535,446 - 144,798,256 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4144,536,761 - 144,797,587 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v04133,220,007 - 133,494,884 (-)NCBIMhudiblu_PPA_v0panPan3
Rnf150
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365356,823,946 - 7,039,354 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF150
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl886,088,013 - 86,332,935 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1886,087,938 - 86,330,418 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2891,560,067 - 91,695,534 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF150
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1787,789,859 - 88,052,237 (-)NCBI
Rnf150
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624853291,946 - 549,392 (-)NCBI

Position Markers
13.MMHAP80FLE1.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38882,915,114 - 82,915,309UniSTSGRCm38
MGSCv37885,439,013 - 85,439,208UniSTSGRCm37
Celera887,193,594 - 87,193,787UniSTS
Cytogenetic Map8C2UniSTS
Whitehead_YAC8 UniSTS
D8Mit346  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38882,930,139 - 82,930,263UniSTSGRCm38
MGSCv37885,454,038 - 85,454,162UniSTSGRCm37
Celera887,208,784 - 87,208,922UniSTS
Cytogenetic Map8C2UniSTS
cM Map837.5UniSTS
Whitehead Genetic838.3UniSTS
Whitehead/MRC_RH8879.4UniSTS
Whitehead_YAC8 UniSTS
UniSTS:487822  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38882,863,428 - 82,864,735UniSTSGRCm38
MGSCv37885,387,327 - 85,388,634UniSTSGRCm37
Cytogenetic Map8C2UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2939
Count of miRNA genes:875
Interacting mature miRNAs:1229
Transcripts:ENSMUST00000078525
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_177378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017312866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030243623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC124757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC132372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC166939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK220374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB090042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000078525   ⟹   ENSMUSP00000077610
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl882,863,356 - 83,091,268 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211020
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl882,863,472 - 82,994,636 (+)Ensembl
RefSeq Acc Id: ENSMUST00000211714
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl882,863,814 - 82,910,729 (+)Ensembl
RefSeq Acc Id: NM_177378   ⟹   NP_796352
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39883,589,985 - 83,817,900 (+)NCBI
GRCm38882,863,356 - 83,091,271 (+)NCBI
MGSCv37885,387,255 - 85,615,170 (+)RGD
Celera887,238,149 - 87,365,916 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017312865   ⟹   XP_017168354
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39883,589,896 - 83,817,894 (+)NCBI
GRCm38882,863,266 - 83,091,263 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017312866   ⟹   XP_017168355
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39883,589,896 - 83,811,467 (+)NCBI
GRCm38882,863,266 - 83,083,931 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030243623   ⟹   XP_030099483
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39883,589,899 - 83,813,285 (+)NCBI
GRCm38882,863,268 - 83,083,931 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154109   ⟹   XP_036010002
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39883,589,889 - 83,737,122 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_796352   ⟸   NM_177378
- Peptide Label: precursor
- UniProtKB: Q5DTZ6 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017168355   ⟸   XM_017312866
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017168354   ⟸   XM_017312865
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_030099483   ⟸   XM_030243623
- Peptide Label: isoform X3
RefSeq Acc Id: ENSMUSP00000077610   ⟸   ENSMUST00000078525
RefSeq Acc Id: XP_036010002   ⟸   XM_036154109
- Peptide Label: isoform X4
Protein Domains
PA

Promoters
RGD ID:8667585
Promoter ID:EPDNEW_M11824
Type:single initiation site
Name:Rnf150_1
Description:Mus musculus ring finger protein 150 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38882,863,286 - 82,863,346EPDNEW
RGD ID:6843475
Promoter ID:MM_KWN:54986
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Brain,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000098607,   NM_177378,   UC009MJQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36885,387,296 - 85,388,312 (+)MPROMDB
RGD ID:6842866
Promoter ID:MM_KWN:54987
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   MEF_B6
Transcripts:AK030860_C030044C12RIK
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36885,610,936 - 85,613,462 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443860 AgrOrtholog
Ensembl Genes ENSMUSG00000047747 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSG00000069980
Ensembl Protein ENSMUSP00000077610 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000078525 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.40.10 UniProtKB/Swiss-Prot
InterPro PA_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_RING UniProtKB/Swiss-Prot
  Znf_RING/FYVE/PHD UniProtKB/Swiss-Prot
KEGG Report mmu:330812 UniProtKB/Swiss-Prot
MGD MGI:2443860 ENTREZGENE
NCBI Gene 330812 ENTREZGENE
Pfam PF02225 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-RING_2 UniProtKB/Swiss-Prot
PhenoGen Rnf150 PhenoGen
PROSITE ZF_RING_2 UniProtKB/Swiss-Prot
SMART RING UniProtKB/Swiss-Prot
UniGene Mm.491438 ENTREZGENE
UniProt Q3TDH4_MOUSE UniProtKB/TrEMBL
  Q5DTZ6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Rnf150  ring finger protein 150  C030044C12Rik  RIKEN cDNA C030044C12 gene  Data Merged 737654 PROVISIONAL