Tnnc2 (troponin C2, fast skeletal type)

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Gene: Tnnc2 (troponin C2, fast skeletal type) Rattus norvegicus

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Symbol:

Tnnc2

Name:

troponin C2, fast skeletal type

RGD ID:

1311973

Description:

Predicted to contribute to actin binding activity. Predicted to be involved in regulation of muscle contraction and skeletal muscle contraction. Predicted to localize to troponin complex. Orthologous to human TNNC2 (troponin C2, fast skeletal type); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

LOC296369; skeletal troponin C; troponin C type 2 (fast); troponin C, skeletal muscle; troponin C2, fast

Orthologs:

Homo sapiens (human) : TNNC2 (troponin C2, fast skeletal type) HGNC Alliance
Mus musculus (house mouse) : Tnnc2 (troponin C2, fast) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : Tnnc2 (troponin C2, fast skeletal type)
Pan paniscus (bonobo/pygmy chimpanzee) : TNNC2 (troponin C2, fast skeletal type)
Canis lupus familiaris (dog) : TNNC2 (troponin C2, fast skeletal type)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Tnnc2 (troponin C2, fast skeletal type)
Sus scrofa (pig) : TNNC2 (troponin C2, fast skeletal type)
Chlorocebus sabaeus (African green monkey) : TNNC2 (troponin C2, fast skeletal type)

more info ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TNNC2 (troponin C2, fast skeletal type)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tnnc2 (troponin C2, fast)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Tnnc2 (troponin C2, fast skeletal type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TNNC2 (troponin C2, fast skeletal type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TNNC2 (troponin C2, fast skeletal type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tnnc2 (troponin C2, fast skeletal type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TNNC2 (troponin C2, fast skeletal type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	TNNC2 (troponin C2, fast skeletal type)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TNNC2 (troponin C2, fast skeletal type)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Tnnc2 (troponin C2, fast)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	si:rp71-17i16.4	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	tnnc2 (troponin C type 2 (fast))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	3	161,243,607 - 161,246,335 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	161,243,587 - 161,246,351 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	167,429,345 - 167,430,429 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	155,807,133 - 155,808,219 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	3	155,713,032 - 155,715,733 (-)	NCBI
Celera	3	152,121,028 - 152,123,756 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

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References - curated

References - uncurated

Genomics

Comparative Map Data

Position Markers

QTLs in Region (Rnor_6.0)

miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences

Protein Sequences

Transcriptome

Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links

Nomenclature History

More on Tnnc2
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: rn5 rn6
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	1311973
Created:	2005-01-12
Species:	Rattus norvegicus
Last Modified:	2020-08-20
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

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InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - SMPDB

Imported Annotations - KEGG (archival)