Slc17a9 (solute carrier family 17 member 9) - Rat Genome Database

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Gene: Slc17a9 (solute carrier family 17 member 9) Rattus norvegicus
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Symbol: Slc17a9
Name: solute carrier family 17 member 9
RGD ID: 1311940
Description: Predicted to enable ADP transmembrane transporter activity; ATP transmembrane transporter activity; and guanine nucleotide transmembrane transporter activity. Acts upstream of or within ATP export. Predicted to be located in chromaffin granule membrane. Predicted to be active in lysosomal membrane and mucin granule. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human SLC17A9 (solute carrier family 17 member 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC362287; LOC362287; RGD1311940; similar to bA305P22.2.1 (novel protein, isoform 1); solute carrier family 17 (vesicular nucleotide transporter), member 9; solute carrier family 17, member 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23167,839,246 - 167,857,462 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,839,385 - 167,855,985 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,219,516 - 172,236,118 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03181,178,612 - 181,195,214 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03177,840,313 - 177,856,915 (+)NCBIRnor_WKY
Rnor_6.03176,228,433 - 176,246,971 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,230,378 - 176,246,953 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03179,929,180 - 179,946,174 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,820,567 - 169,837,283 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,726,638 - 169,742,785 (+)NCBI
Celera3164,726,946 - 164,743,476 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Identification of a vesicular nucleotide transporter. Sawada K, etal., Proc Natl Acad Sci U S A. 2008 Apr 15;105(15):5683-6. doi: 10.1073/pnas.0800141105. Epub 2008 Mar 28.
Additional References at PubMed
PMID:21810784   PMID:24912190   PMID:24989000   PMID:25043192   PMID:29282210   PMID:31810015  


Genomics

Comparative Map Data
Slc17a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23167,839,246 - 167,857,462 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,839,385 - 167,855,985 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,219,516 - 172,236,118 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.03181,178,612 - 181,195,214 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.03177,840,313 - 177,856,915 (+)NCBIRnor_WKY
Rnor_6.03176,228,433 - 176,246,971 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,230,378 - 176,246,953 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03179,929,180 - 179,946,174 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,820,567 - 169,837,283 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13169,726,638 - 169,742,785 (+)NCBI
Celera3164,726,946 - 164,743,476 (-)NCBICelera
Cytogenetic Map3q43NCBI
SLC17A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,952,709 - 62,969,585 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2062,952,707 - 62,969,585 (+)EnsemblGRCh38hg38GRCh38
GRCh372061,584,061 - 61,600,937 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,054,444 - 61,070,394 (+)NCBINCBI36Build 36hg18NCBI36
Build 342061,054,503 - 61,070,392NCBI
Celera2058,260,628 - 58,276,497 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2058,301,019 - 58,316,723 (+)NCBIHuRef
CHM1_12061,485,010 - 61,500,690 (+)NCBICHM1_1
T2T-CHM13v2.02064,752,832 - 64,769,656 (+)NCBIT2T-CHM13v2.0
Slc17a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,363,989 - 180,384,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,367,056 - 180,384,073 (+)EnsemblGRCm39 Ensembl
GRCm382180,724,576 - 180,742,280 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,725,263 - 180,742,280 (+)EnsemblGRCm38mm10GRCm38
MGSCv372180,460,044 - 180,476,983 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,654,787 - 180,663,584 (+)NCBIMGSCv36mm8
Celera2184,810,869 - 184,828,004 (+)NCBICelera
Cytogenetic Map2H4NCBI
Slc17a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,124,437 - 1,139,476 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555281,124,430 - 1,139,476 (-)NCBIChiLan1.0ChiLan1.0
SLC17A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan12068,733,119 - 68,748,587 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,339,779 - 59,356,396 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12060,631,969 - 60,647,286 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2060,631,969 - 60,647,278 (+)Ensemblpanpan1.1panPan2
SLC17A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,752,464 - 46,765,915 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,752,107 - 46,766,375 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,936,526 - 45,949,977 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,624,805 - 47,638,260 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,624,794 - 47,638,258 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,722,604 - 46,736,030 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,845,708 - 46,859,155 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,601,923 - 47,615,385 (+)NCBIUU_Cfam_GSD_1.0
Slc17a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,981,669 - 194,997,290 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,435,275 - 10,450,960 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493651410,435,261 - 10,450,976 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC17A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,186,112 - 62,200,084 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,186,114 - 62,200,091 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC17A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121,254,573 - 1,270,730 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21,255,203 - 1,270,614 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605049,083,240 - 49,100,007 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc17a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474128,707,739 - 28,730,695 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc17a9
23 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:98
Interacting mature miRNAs:115
Transcripts:ENSRNOT00000013623
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 36 10 36 1 1
Low 22 20 5 9 5 4 5 44 35 39 10 4
Below cutoff 21 1 4 6 30 1 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000013623   ⟹   ENSRNOP00000013621
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,839,385 - 167,855,985 (+)Ensembl
Rnor_6.0 Ensembl3176,230,378 - 176,246,953 (+)Ensembl
RefSeq Acc Id: NM_001108613   ⟹   NP_001102083
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23167,839,385 - 167,855,985 (+)NCBI
Rnor_6.03176,230,378 - 176,246,953 (+)NCBI
Rnor_5.03179,929,180 - 179,946,174 (+)NCBI
RGSC_v3.43169,820,567 - 169,837,283 (+)RGD
Celera3164,726,946 - 164,743,476 (-)RGD
Sequence:
RefSeq Acc Id: XM_006235769   ⟹   XP_006235831
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23167,839,260 - 167,857,462 (+)NCBI
Rnor_6.03176,228,433 - 176,246,971 (+)NCBI
Rnor_5.03179,929,180 - 179,946,174 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105555   ⟹   XP_038961483
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23167,839,256 - 167,857,462 (+)NCBI
RefSeq Acc Id: XM_039105556   ⟹   XP_038961484
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23167,839,246 - 167,857,462 (+)NCBI
RefSeq Acc Id: XM_039105557   ⟹   XP_038961485
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23167,839,251 - 167,857,462 (+)NCBI
RefSeq Acc Id: XM_039105558   ⟹   XP_038961486
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23167,839,387 - 167,857,462 (+)NCBI
RefSeq Acc Id: XM_039105559   ⟹   XP_038961487
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23167,839,257 - 167,851,405 (+)NCBI
RefSeq Acc Id: XR_005501945
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.23167,839,249 - 167,854,980 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001102083   ⟸   NM_001108613
- UniProtKB: D3ZUN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235831   ⟸   XM_006235769
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000013621   ⟸   ENSRNOT00000013623
RefSeq Acc Id: XP_038961484   ⟸   XM_039105556
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038961485   ⟸   XM_039105557
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038961483   ⟸   XM_039105555
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961487   ⟸   XM_039105559
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038961486   ⟸   XM_039105558
- Peptide Label: isoform X5
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUN1-F1-model_v2 AlphaFold D3ZUN1 1-447 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692741
Promoter ID:EPDNEW_R3266
Type:initiation region
Name:Slc17a9_1
Description:solute carrier family 17 member 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03176,230,414 - 176,230,474EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311940 AgrOrtholog
BioCyc Gene G2FUF-46321 BioCyc
Ensembl Genes ENSRNOG00000010275 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013621 ENTREZGENE
  ENSRNOP00000013621.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013623 ENTREZGENE
  ENSRNOT00000013623.6 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  SLC17A9-like UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/TrEMBL
KEGG Report rno:362287 UniProtKB/TrEMBL
NCBI Gene 362287 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 17 UniProtKB/TrEMBL
  SOLUTE CARRIER FAMILY 17 MEMBER 9 UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
PhenoGen Slc17a9 PhenoGen
PROSITE MFS UniProtKB/TrEMBL
  SUGAR_TRANSPORT_2 UniProtKB/TrEMBL
Superfamily-SCOP MFS_gen_substrate_transporter UniProtKB/TrEMBL
UniProt D3ZUN1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-25 Slc17a9  solute carrier family 17 member 9  Slc17a9  solute carrier family 17 (vesicular nucleotide transporter), member 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-02 Slc17a9  solute carrier family 17 (vesicular nucleotide transporter), member 9  Slc17a9  solute carrier family 17, member 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-23 Slc17a9  solute carrier family 17, member 9  RGD1311940  similar to bA305P22.2.1 (novel protein, isoform 1)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1311940  similar to bA305P22.2.1 (novel protein, isoform 1)   RGD1311940_predicted  similar to bA305P22.2.1 (novel protein, isoform 1) (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1311940_predicted  similar to bA305P22.2.1 (novel protein, isoform 1) (predicted)  LOC362287_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362287_predicted  similar to bA305P22.2.1 (novel protein, isoform 1) (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL