Tpx2 (TPX2, microtubule nucleation factor)

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Gene: Tpx2 (TPX2, microtubule nucleation factor) Rattus norvegicus

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Symbol:

Tpx2

Name:

TPX2, microtubule nucleation factor

RGD ID:

1311894

Description:

Predicted to enable importin-alpha family protein binding activity; molecular adaptor activity; and protein kinase binding activity. Predicted to be involved in microtubule cytoskeleton organization and regulation of microtubule cytoskeleton organization. Predicted to be located in several cellular components, including axon hillock; intercellular bridge; and spindle. Predicted to be active in spindle. Orthologous to human TPX2 (TPX2 microtubule nucleation factor); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC311546; targeting protein for Xklp2; TPX2, microtubule-associated; TPX2, microtubule-associated protein homolog; TPX2, microtubule-associated protein homolog (Xenopus laevis) ; TPX2, microtubule-associated, homolog; TPX2, microtubule-associated, homolog (Xenopus laevis)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TPX2 (TPX2 microtubule nucleation factor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tpx2 (TPX2, microtubule-associated)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tpx2 (TPX2 microtubule nucleation factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TPX2 (TPX2 microtubule nucleation factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TPX2 (TPX2 microtubule nucleation factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tpx2 (TPX2 microtubule nucleation factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TPX2 (TPX2 microtubule nucleation factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TPX2 (TPX2 microtubule nucleation factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tpx2 (TPX2 microtubule nucleation factor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TPX2 (TPX2 microtubule nucleation factor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tpx2 (TPX2, microtubule-associated)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tpx2 (TPX2 microtubule nucleation factor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tpx2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	161,778,709 - 161,820,941 (+)	NCBI		GRCr8
mRatBN7.2	3	141,318,428 - 141,360,684 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	141,318,455 - 141,360,468 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	145,223,400 - 145,265,675 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	153,807,225 - 153,849,489 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	151,546,693 - 151,589,001 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	148,327,965 - 148,370,187 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	148,327,965 - 148,370,187 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	154,730,957 - 154,773,179 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	143,194,067 - 143,236,185 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	143,117,960 - 143,141,592 (+)	NCBI
Celera	3	140,067,778 - 140,110,008 (+)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

hepatocellular carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (EXP,ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3-dimethoxynaphthalene-1,4-dione (ISO)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

antimycin A (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

azathioprine (ISO)

azoxystrobin (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bicalutamide (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

cadmium atom (ISO)

caffeine (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

copper(II) sulfate (ISO)

corosolic acid (ISO)

coumarin (ISO)

coumestrol (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

DDE (ISO)

deguelin (ISO)

dexamethasone (ISO)

diallyl trisulfide (ISO)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (ISO)

dichloroacetic acid (ISO)

dimethylarsinic acid (EXP)

dioxygen (EXP)

diquat (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

enzyme inhibitor (ISO)

fenpyroximate (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

geraniol (ISO)

indometacin (ISO)

irinotecan (ISO)

ivermectin (ISO)

josamycin (ISO)

L-methionine (ISO)

leflunomide (ISO)

lidocaine (EXP)

lipopolysaccharide (ISO)

lucanthone (ISO)

menadione (ISO)

methamphetamine (ISO)

methoxychlor (EXP)

mitomycin C (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

niclosamide (ISO)

Nivalenol (ISO)

NS-398 (ISO)

ozone (ISO)

palbociclib (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenformin (EXP)

phenobarbital (ISO)

phorbol 13-acetate 12-myristate (ISO)

picoxystrobin (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

pyrimidifen (ISO)

resveratrol (ISO)

rotenone (EXP,ISO)

senecionine (EXP)

Senkirkine (EXP)

silicon dioxide (ISO)

sodium arsenite (ISO)

SP2509 (ISO)

sunitinib (ISO)

tebufenpyrad (ISO)

testosterone (ISO)

tetrachloroethene (ISO)

tetrachloromethane (EXP,ISO)

thifluzamide (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (EXP,ISO)

tremolite asbestos (ISO)

trichloroethene (EXP,ISO)

trichostatin A (ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

trovafloxacin (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

Withanone (ISO)

zinc atom (ISO)

zinc(0) (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

activation of protein kinase activity (IEA,ISO)

cell division (IEA)

microtubule nucleation (ISO)

mitotic spindle assembly (ISO)

negative regulation of microtubule depolymerization (ISO)

regulation of mitotic spindle organization (ISO)

Cellular Component

axon hillock (ISO)

cytoplasm (IEA)

intercellular bridge (IEA,ISO)

microtubule (IEA)

microtubule cytoskeleton (ISO)

mitotic spindle (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IEA)

spindle (ISO)

spindle pole (ISO)

Molecular Function

importin-alpha family protein binding (ISO)

molecular adaptor activity (ISO)

protein binding (ISO)

protein kinase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14580337	PMID:14718566	PMID:18662907	PMID:18663142	PMID:19668197	PMID:19801554	PMID:26165940	PMID:26414402

Genomics

Comparative Map Data

Tpx2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	161,778,709 - 161,820,941 (+)	NCBI		GRCr8
mRatBN7.2	3	141,318,428 - 141,360,684 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	141,318,455 - 141,360,468 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	145,223,400 - 145,265,675 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	153,807,225 - 153,849,489 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	151,546,693 - 151,589,001 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	148,327,965 - 148,370,187 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	148,327,965 - 148,370,187 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	154,730,957 - 154,773,179 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	143,194,067 - 143,236,185 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	143,117,960 - 143,141,592 (+)	NCBI
Celera	3	140,067,778 - 140,110,008 (+)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

TPX2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	31,739,290 - 31,801,800 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	31,739,271 - 31,801,805 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	30,327,093 - 30,389,603 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	29,790,565 - 29,853,264 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	29,790,564 - 29,853,264	NCBI
Celera	20	27,083,256 - 27,145,950 (+)	NCBI		Celera
Cytogenetic Map	20	q11.21	NCBI
HuRef	20	27,115,888 - 27,178,524 (+)	NCBI		HuRef
CHM1_1	20	30,230,786 - 30,293,470 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	33,463,246 - 33,526,408 (+)	NCBI		T2T-CHM13v2.0

Tpx2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	152,689,859 - 152,737,241 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	152,689,884 - 152,737,241 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	152,847,964 - 152,895,321 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	152,847,964 - 152,895,321 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	152,673,700 - 152,721,057 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	152,539,504 - 152,585,459 (+)	NCBI		MGSCv36	mm8
Celera	2	158,663,984 - 158,712,802 (+)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	75.41	NCBI

Tpx2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	29,171,329 - 29,232,891 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	29,170,695 - 29,233,924 (-)	NCBI	ChiLan1.0	ChiLan1.0

TPX2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	37,434,903 - 37,498,327 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	37,427,939 - 37,491,425 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	28,032,663 - 28,095,223 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	29,163,312 - 29,225,860 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	29,163,312 - 29,225,860 (+)	Ensembl	panpan1.1		panPan2

TPX2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	21,209,494 - 21,273,029 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	21,209,588 - 21,269,893 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	20,845,578 - 20,920,421 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	21,885,095 - 21,959,895 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	21,896,261 - 21,958,406 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	21,163,021 - 21,238,221 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	21,268,270 - 21,343,512 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	21,698,941 - 21,774,244 (+)	NCBI		UU_Cfam_GSD_1.0

Tpx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	170,287,395 - 170,338,871 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936485	18,718,795 - 18,767,951 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936485	18,718,801 - 18,773,315 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TPX2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	35,431,395 - 35,485,065 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	35,431,271 - 35,484,814 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	40,431,363 - 40,452,926 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TPX2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	36,131,907 - 36,191,254 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	36,134,760 - 36,191,425 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	90,722,904 - 90,781,107 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tpx2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624741	709,322 - 772,423 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624741	707,267 - 772,543 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tpx2
230 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	61
Count of miRNA genes:	52
Interacting mature miRNAs:	59
Transcripts:	ENSRNOT00000010851
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	130656562	169034231	Rat
1598877	Bp285	Blood pressure QTL 285	1.5	0.03	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	120538241	165538241	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141074471	169034231	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
2298477	Eau4	Experimental allergic uveoretinitis QTL 4		0.0011	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	3	137398739	169034231	Rat
61335	Bp20	Blood pressure QTL 20	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	141339236	155617360	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
1331726	Bp208	Blood pressure QTL 208	3.129		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141339013	162184794	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1300173	Rf11	Renal function QTL 11	3.38		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	121056165	145956249	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	131635904	169034231	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	122438700	167438700	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	127162703	168026850	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	118839124	163839124	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	121056165	157309487	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	140069424	146976080	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	130193298	161695983	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	130656562	169034231	Rat
8552952	Pigfal13	Plasma insulin-like growth factor 1 level QTL 13			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	138799500	169034231	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	124122556	169034231	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat

Markers in Region

D3Mit2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	141,339,013 - 141,339,236 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	148,348,517 - 148,348,739	NCBI	Rnor6.0
Rnor_5.0	3	154,751,509 - 154,751,731	UniSTS	Rnor5.0
RGSC_v3.4	3	143,214,619 - 143,214,737	UniSTS	RGSC3.4
RGSC_v3.1	3	143,120,240 - 143,120,359	RGD
Celera	3	140,088,337 - 140,088,559	UniSTS
RH 3.4 Map	3	1268.9	UniSTS
RH 3.4 Map	3	1268.9	RGD
RH 2.0 Map	3	840.4	RGD
Cytogenetic Map	3	q41	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	11	78	126	84	57	84	8	12	157	69	136	15	6
Low		57	101	63		63	28	33	93	46	9	42	18
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006235274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591777	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591778	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283825	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474050	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010851 ⟹ ENSRNOP00000010851

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	141,318,543 - 141,360,404 (+)	Ensembl
Rnor_6.0 Ensembl	3	148,327,965 - 148,370,187 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088481 ⟹ ENSRNOP00000068619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	141,318,455 - 141,360,468 (+)	Ensembl
Rnor_6.0 Ensembl	3	148,327,987 - 148,369,970 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104440 ⟹ ENSRNOP00000097456

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	141,318,543 - 141,360,404 (+)	Ensembl

RefSeq Acc Id:

NM_001107790 ⟹ NP_001101260

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	161,778,720 - 161,820,941 (+)	NCBI
mRatBN7.2	3	141,318,456 - 141,360,684 (+)	NCBI
Rnor_6.0	3	148,327,965 - 148,370,187 (+)	NCBI
Rnor_5.0	3	154,730,957 - 154,773,179 (+)	NCBI
RGSC_v3.4	3	143,194,067 - 143,236,185 (+)	RGD
Celera	3	140,067,778 - 140,110,008 (+)	RGD

Sequence:

show sequence

CTGATTGGTGCATTTGACCGGTGTCTGAGTTCAAATTTTCAACCGTACTAGTTGTGTCCGGGAG
CCGTCTTAGGCGCTGGCTTCTTAGAGTTGGTGCAAGCTGAAGCCGGGAAAGTAGTGTGAAGGTG
AGGGGAAGCAGCGGTGCGCCGGGAGCCATTCCTCAGTTTTCCTGAGAGGGTGGAGGAGTCCGCG
GGGCGGGCCATGCCAGCCTAGACAGCGCGCGGGCTTCGGACGCCGGGGTCGGGACTTGGGAGTG
AAGTCTCAGATTCGGCTTCAGTATTCCTGGGAACCCCGGAGCAGAGGTTGCTCCAGGCTGTCAG
CTACTAGACGAGGACGATCTATTGAGTGGAGTATTAGAATCCTGGAAAAAGTGTGTTCTGCACT
AGGTGGGGCAATGGCCCAAGTCCCAACAGCTTACTCGTTTGATGCCCCCACCGACTTTATCAAC
TTTTCATCTTTGGATGCTGAAGAGGACACTGAAAATATAGACTCATGGTTTGATGAGAAGGCCA
ACTTGGAGAACAAGTTTCTTCGGCAGAGTGGAATAGGAGAACCTTTTCAGGGGAAGACGTCCTT
GAGAAAAGCCAAACTTCAACAAGGCTGTGTCACACCATTGAAGGCAGTTGATAACACTTACTAC
AAAGAGACAGAAAAGGAAAATCTTCAGAAGCAATCTATCCCATCAAATGATTGTCCTTCCCTGA
ATGCTAAGAGAGCTGTGACAGGAACTACTCCCATCCAGCCTCAGAGAAGATCTGTTAGACTCTC
TGCTCAGAAGGATTTGGAGCAGAAAGAGAAAAACCATGTTGCCTCTGTTGAAATGAAAGCCAAG
AGATGCACTGCTCCCACGACTGATTATCCCCCCAACAAGAAAATGAAAGTGTCTCATAAAAAGA
AACCGGAGGAAGAAGAGGAGGGCAGTGCTCCAGCTACTTCAAGAAAGGATGAAACTCTGGAGAG
GGCCAAGGGCAAACACACTGTGCCTGCTGTGCCGCCTGCCAGGGAGAAGACTGTAAAGAGTACT
GAAGAGCAGGAGTTAGAGAAGAGTCTGAGAATGCAGCAGGAAGTGGTAGAGATGCGGAAGAAGA
ATGAAGAGTTTAAGAAGCTGGCTCTTGCAGGGCCAGGGCAACCTGTGAAGAAATCCACCAGCCA
GGTTACCAAGACAGTTGACTTTCACTTCCTCACAGATGAGAGAATCAAACAACATCCCAAGAGC
CAGGAGGAGTATAAGGAAGTGAACTTCATGTCCGAACTTCGAAAGCATTCTTCCACTCCTGCCC
GAGGGACCAGAGGATGTACCATCATTAAGCCTTTCAATCTGTCCAAAGGAAAGAAAAGAACATT
TGACGAAGCAGCGTCTACATATGTGCCCATTGCACAGCAGGTTGAAGCCTTCCACAAACGAACC
CCTAATCGATACCATCTGAGGAACAAGAAGGACGAGAGCTTGTTACCCTCCAAACCTGTGAACA
AGATTGTACGAGACCCCCAGACCCCTATACTGCAGACCAAATACCGTGCAAGGGCTGTGACCTG
CAAAAGTGCGGCAGAGAAGGAGGCCGAGGAACTTGAGAAACTGCAACAATACAAATTCAAAGCA
CGGGAACTTGATCCCAGAATTTTTGAAAGTGGCCCCATCTTGCCCAAGAGACCACCTGTTAAGC
CTCCTACCCAGCCTGTTGGTTTTGATTTGGAAATTGAGAAACGAATTCATGAGCGAGAGTCAAA
GAAAAAACCCGAAGATGAACAATTTGAATTTCATTCCAGACCTTGCCCTACTAAGATCTTGGAA
GATGTTGTGGGTGTTCCTGAAAAGAAGGTTATTCCAGCCACTGTCCCTAAGTCACCAGTTTTTG
CACTGAAGAACAGGATCCGAGTGCCTGTCAAAGAAGATGAGGAAGAGGAGAAACCAGTAGTGAT
AAAAGCTCAACCTGTGCCACATTATGGGGTGCCTTATAAACCCCCCATCCCAGAGACAAGAAAT
GTGGAGGTGTGCCCGTTCTCCTTTGATACCCGGGACAAAGAACGCCAGTTGCAGAAGGAGAAAA
AAATAAAAGAAATGCAGAAAGGAGAGGTGCCCAAGTTCAAGGCACTTCCTGTGCCCCATTTTGA
CACCATTAACCTGCCAGAGAAAAAGGTAAAGAATGCGACTCAAGCCGAGCCTTTCTCCTTGGAG
ACAGACAAGAGAGGTGCCTACAAGGCCGAGATATGGAAGCACCAGCTGGAAGAAGAGCAGAAGC
AGCAGAAGGAAGCAGCTTGCTTCAAGGCTCGTCCAAACACTGTCATCTTCCAAGAGCCCTTTGT
TCCCAAGAAAGAGAAAAAATCAGCTGCTGAGAACCCTTCTGGTTCTCTAGTTCAGGAACCTTTT
CAGCTGGCCACCGAGAAGAGAGCCAAAGAGCGGCAGGAGCTGGAGAAGAAAATGGCTGAGATGG
AGGCCTGGAAACTGCAGCAGTTGGCAGAAGTCAGGCAGCAGGAAGAGGAGCAGCAGAAGGAGGA
GCTGGCCAGGCTCCGGAAGGAACTGGTGCACAAGGCAAATCCAATCCGAAAGTACTCAGCAGTG
GAGGTGAAATCCAGTGAGCTGCCTCTGACCGTGCCGGTGTCTCCTAAGTTCTCCACTCGGTTCC
AGTAGAAGCCGCCGCATGTACACCACAGGCACAGAGAACACGTTTTCAGACTCACCTACGTGTG
TGGAAACATACCTGAGAACTGTGGAGGCCAGGTTTTGAAGATCGAGTTACATGGAGACTTTGAA
GCTAATGAGACAGCACTCATTTAGACTCATCAGACTTCCTGTAGTTATTTCCTGCAGACATTAG
CTGGCCCTTTCCTGTTGGTCATAACTCTGGCCAGGACTTCAACTATTCATTTTGGCATAGTCTA
CTTTTCACCTAATCTCCCCCTTCTCCCCCTTTATATATGTATTTTAAGCATAAAATAAAGGCAG
TCAAGTCCTAGGTCTGGTTTCAGTCACAGTGTAAGTGAGAAGCAGCCAGTCTGTAGGATTCCTT
CTTCAGAAGAGTTTATGGGGGAGCCCTGCACTGTGAGGCAGCAGGGAACCTCCGTAAGGGCACC
AAGGAAGTCGACTGCATGGACCCCGAGAGACCCCCCGGAGACGCTGCTGGGCATGTTCTTCATT
GTCGGTGCAGACAGTGGAATGTCACAGCCTACAG

hide sequence

RefSeq Acc Id:

XM_006235270 ⟹ XP_006235332

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	161,778,714 - 161,820,725 (+)	NCBI
mRatBN7.2	3	141,318,428 - 141,360,468 (+)	NCBI
Rnor_6.0	3	148,327,970 - 148,369,971 (+)	NCBI
Rnor_5.0	3	154,730,957 - 154,773,179 (+)	NCBI

Sequence:

show sequence

TGGTGCATTTGACCGGTGTCTGAGTTCAAATTTTCAACCGTACTAGTTGTGTCCGGGAGCCGTC
TTAGGCGCTGGCTTCTTAGAGTTGGTGCAAGCTGAAGCCGGGAAAGTAGTGTGAAGGTTCTTCA
TGAGAAGTGTCTGCCGGACTGTAATACTTCAAGAGACTTGAGAGCGAGATTGTGACTTTGAGGT
GAGGTTGTAAGAAGTGGACTTGAGAGACAAATTTACTATAGATCAGAGGACGATCTATTGAGTG
GAGTATTAGAATCCTGGAAAAAGTGTGTTCTGCACTAGGTGGGGCAATGGCCCAAGTCCCAACA
GCTTACTCGTTTGATGCCCCCACCGACTTTATCAACTTTTCATCTTTGGATGCTGAAGAGGACA
CTGAAAATATAGACTCATGGTTTGATGAGAAGGCCAACTTGGAGAACAAGTTTCTTCGGCAGAG
TGGAATAGGAGAACCTTTTCAGGGGAAGACGTCCTTGAGAAAAGCCAAACTTCAACAAGGCTGT
GTCACACCATTGAAGGCAGTTGATAACACTTACTACAAAGAGACAGAAAAGGAAAATCTTCAGA
AGCAATCTATCCCATCAAATGATTGTCCTTCCCTGAATGCTAAGAGAGCTGTGACAGGAACTAC
TCCCATCCAGCCTCAGAGAAGATCTGTTAGACTCTCTGCTCAGAAGGATTTGGAGCAGAAAGAG
AAAAACCATGTTGCCTCTGTTGAAATGAAAGCCAAGAGATGCACTGCTCCCACGACTGATTATC
CCCCCAACAAGAAAATGAAAGTGTCTCATAAAAAGAAACCGGAGGAAGAAGAGGAGGGCAGTGC
TCCAGCTACTTCAAGAAAGGATGAAACTCTGGAGAGGGCCAAGGGCAAACACACTGTGCCTGCT
GTGCCGCCTGCCAGGGAGAAGACTGTAAAGAGTACTGAAGAGCAGGAGTTAGAGAAGAGTCTGA
GAATGCAGCAGGAAGTGGTAGAGATGCGGAAGAAGAATGAAGAGTTTAAGAAGCTGGCTCTTGC
AGGGCCAGGGCAACCTGTGAAGAAATCCACCAGCCAGGTTACCAAGACAGTTGACTTTCACTTC
CTCACAGATGAGAGAATCAAACAACATCCCAAGAGCCAGGAGGAGTATAAGGAAGTGAACTTCA
TGTCCGAACTTCGAAAGCATTCTTCCACTCCTGCCCGAGGGACCAGAGGATGTACCATCATTAA
GCCTTTCAATCTGTCCAAAGGAAAGAAAAGAACATTTGACGAAGCAGCGTCTACATATGTGCCC
ATTGCACAGCAGGTTGAAGCCTTCCACAAACGAACCCCTAATCGATACCATCTGAGGAACAAGA
AGGACGAGAGCTTGTTACCCTCCAAACCTGTGAACAAGATTGTACGAGACCCCCAGACCCCTAT
ACTGCAGACCAAATACCGTGCAAGGGCTGTGACCTGCAAAAGTGCGGCAGAGAAGGAGGCCGAG
GAACTTGAGAAACTGCAACAATACAAATTCAAAGCACGGGAACTTGATCCCAGAATTTTTGAAA
GTGGCCCCATCTTGCCCAAGAGACCACCTGTTAAGCCTCCTACCCAGCCTGTTGGTTTTGATTT
GGAAATTGAGAAACGAATTCATGAGCGAGAGTCAAAGAAAAAACCCGAAGATGAACAATTTGAA
TTTCATTCCAGACCTTGCCCTACTAAGATCTTGGAAGATGTTGTGGGTGTTCCTGAAAAGAAGG
TTATTCCAGCCACTGTCCCTAAGTCACCAGTTTTTGCACTGAAGAACAGGATCCGAGTGCCTGT
CAAAGAAGATGAGGAAGAGGAGAAACCAGTAGTGATAAAAGCTCAACCTGTGCCACATTATGGG
GTGCCTTATAAACCCCCCATCCCAGAGACAAGAAATGTGGAGGTGTGCCCGTTCTCCTTTGATA
CCCGGGACAAAGAACGCCAGTTGCAGAAGGAGAAAAAAATAAAAGAAATGCAGAAAGGAGAGGT
GCCCAAGTTCAAGGCACTTCCTGTGCCCCATTTTGACACCATTAACCTGCCAGAGAAAAAGGTA
AAGAATGCGACTCAAGCCGAGCCTTTCTCCTTGGAGACAGACAAGAGAGGTGCCTACAAGGCCG
AGATATGGAAGCACCAGCTGGAAGAAGAGCAGAAGCAGCAGAAGGAAGCAGCTTGCTTCAAGGC
TCGTCCAAACACTGTCATCTTCCAAGAGCCCTTTGTTCCCAAGAAAGAGAAAAAATCAGCTGCT
GAGAACCCTTCTGGTTCTCTAGTTCAGGAACCTTTTCAGCTGGCCACCGAGAAGAGAGCCAAAG
AGCGGCAGGAGCTGGAGAAGAAAATGGCTGAGATGGAGGCCTGGAAACTGCAGCAGTTGGCAGA
AGTCAGGCAGCAGGAAGAGGAGCAGCAGAAGGAGGAGCTGGCCAGGCTCCGGAAGGAACTGGTG
CACAAGGCAAATCCAATCCGAAAGTACTCAGCAGTGGAGGTGAAATCCAGTGAGCTGCCTCTGA
CCGTGCCGGTGTCTCCTAAGTTCTCCACTCGGTTCCAGTAGAAGCCGCCGCATGTACACCACAG
GCACAGAGAACACGTTTTCAGACTCACCTACGTGTGTGGAAACATACCTGAGAACTGTGGAGGC
CAGGTTTTGAAGATCGAGTTACATGGAGACTTTGAAGCTAATGAGACAGCACTCATTTAGACTC
ATCAGACTTCCTGTAGTTATTTCCTGCAGACATTAGCTGGCCCTTTCCTGTTGGTCATAACTCT
GGCCAGGACTTCAACTATTCATTTTGGCATAGTCTACTTTTCACCTAATCTCCCCCTTCTCCCC
CTTTATATATGTATTTTAAGCATAAAATAAAGGCAGTCAAGTCCTA

hide sequence

RefSeq Acc Id:

XM_006235272 ⟹ XP_006235334

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	161,778,714 - 161,820,725 (+)	NCBI
mRatBN7.2	3	141,318,428 - 141,360,468 (+)	NCBI
Rnor_6.0	3	148,327,970 - 148,369,971 (+)	NCBI
Rnor_5.0	3	154,730,957 - 154,773,179 (+)	NCBI

Sequence:

show sequence

TGGTGCATTTGACCGGTGTCTGAGTTCAAATTTTCAACCGTACTAGTTGTGTCCGGGAGCCGTC
TTAGGCGCTGGCTTCTTAGAGTTGGTGCAAGCTGAAGCCGGGAAAGTAGTGTGAAGGTTCTTCA
TGAGAAGTGTCTGCCGGACTGTAATACTTCAAGAGACTTGAGAGCGAGATTGTGACTTTGAGAG
GACGATCTATTGAGTGGAGTATTAGAATCCTGGAAAAAGTGTGTTCTGCACTAGGTGGGGCAAT
GGCCCAAGTCCCAACAGCTTACTCGTTTGATGCCCCCACCGACTTTATCAACTTTTCATCTTTG
GATGCTGAAGAGGACACTGAAAATATAGACTCATGGTTTGATGAGAAGGCCAACTTGGAGAACA
AGTTTCTTCGGCAGAGTGGAATAGGAGAACCTTTTCAGGGGAAGACGTCCTTGAGAAAAGCCAA
ACTTCAACAAGGCTGTGTCACACCATTGAAGGCAGTTGATAACACTTACTACAAAGAGACAGAA
AAGGAAAATCTTCAGAAGCAATCTATCCCATCAAATGATTGTCCTTCCCTGAATGCTAAGAGAG
CTGTGACAGGAACTACTCCCATCCAGCCTCAGAGAAGATCTGTTAGACTCTCTGCTCAGAAGGA
TTTGGAGCAGAAAGAGAAAAACCATGTTGCCTCTGTTGAAATGAAAGCCAAGAGATGCACTGCT
CCCACGACTGATTATCCCCCCAACAAGAAAATGAAAGTGTCTCATAAAAAGAAACCGGAGGAAG
AAGAGGAGGGCAGTGCTCCAGCTACTTCAAGAAAGGATGAAACTCTGGAGAGGGCCAAGGGCAA
ACACACTGTGCCTGCTGTGCCGCCTGCCAGGGAGAAGACTGTAAAGAGTACTGAAGAGCAGGAG
TTAGAGAAGAGTCTGAGAATGCAGCAGGAAGTGGTAGAGATGCGGAAGAAGAATGAAGAGTTTA
AGAAGCTGGCTCTTGCAGGGCCAGGGCAACCTGTGAAGAAATCCACCAGCCAGGTTACCAAGAC
AGTTGACTTTCACTTCCTCACAGATGAGAGAATCAAACAACATCCCAAGAGCCAGGAGGAGTAT
AAGGAAGTGAACTTCATGTCCGAACTTCGAAAGCATTCTTCCACTCCTGCCCGAGGGACCAGAG
GATGTACCATCATTAAGCCTTTCAATCTGTCCAAAGGAAAGAAAAGAACATTTGACGAAGCAGC
GTCTACATATGTGCCCATTGCACAGCAGGTTGAAGCCTTCCACAAACGAACCCCTAATCGATAC
CATCTGAGGAACAAGAAGGACGAGAGCTTGTTACCCTCCAAACCTGTGAACAAGATTGTACGAG
ACCCCCAGACCCCTATACTGCAGACCAAATACCGTGCAAGGGCTGTGACCTGCAAAAGTGCGGC
AGAGAAGGAGGCCGAGGAACTTGAGAAACTGCAACAATACAAATTCAAAGCACGGGAACTTGAT
CCCAGAATTTTTGAAAGTGGCCCCATCTTGCCCAAGAGACCACCTGTTAAGCCTCCTACCCAGC
CTGTTGGTTTTGATTTGGAAATTGAGAAACGAATTCATGAGCGAGAGTCAAAGAAAAAACCCGA
AGATGAACAATTTGAATTTCATTCCAGACCTTGCCCTACTAAGATCTTGGAAGATGTTGTGGGT
GTTCCTGAAAAGAAGGTTATTCCAGCCACTGTCCCTAAGTCACCAGTTTTTGCACTGAAGAACA
GGATCCGAGTGCCTGTCAAAGAAGATGAGGAAGAGGAGAAACCAGTAGTGATAAAAGCTCAACC
TGTGCCACATTATGGGGTGCCTTATAAACCCCCCATCCCAGAGACAAGAAATGTGGAGGTGTGC
CCGTTCTCCTTTGATACCCGGGACAAAGAACGCCAGTTGCAGAAGGAGAAAAAAATAAAAGAAA
TGCAGAAAGGAGAGGTGCCCAAGTTCAAGGCACTTCCTGTGCCCCATTTTGACACCATTAACCT
GCCAGAGAAAAAGGTAAAGAATGCGACTCAAGCCGAGCCTTTCTCCTTGGAGACAGACAAGAGA
GGTGCCTACAAGGCCGAGATATGGAAGCACCAGCTGGAAGAAGAGCAGAAGCAGCAGAAGGAAG
CAGCTTGCTTCAAGGCTCGTCCAAACACTGTCATCTTCCAAGAGCCCTTTGTTCCCAAGAAAGA
GAAAAAATCAGCTGCTGAGAACCCTTCTGGTTCTCTAGTTCAGGAACCTTTTCAGCTGGCCACC
GAGAAGAGAGCCAAAGAGCGGCAGGAGCTGGAGAAGAAAATGGCTGAGATGGAGGCCTGGAAAC
TGCAGCAGTTGGCAGAAGTCAGGCAGCAGGAAGAGGAGCAGCAGAAGGAGGAGCTGGCCAGGCT
CCGGAAGGAACTGGTGCACAAGGCAAATCCAATCCGAAAGTACTCAGCAGTGGAGGTGAAATCC
AGTGAGCTGCCTCTGACCGTGCCGGTGTCTCCTAAGTTCTCCACTCGGTTCCAGTAGAAGCCGC
CGCATGTACACCACAGGCACAGAGAACACGTTTTCAGACTCACCTACGTGTGTGGAAACATACC
TGAGAACTGTGGAGGCCAGGTTTTGAAGATCGAGTTACATGGAGACTTTGAAGCTAATGAGACA
GCACTCATTTAGACTCATCAGACTTCCTGTAGTTATTTCCTGCAGACATTAGCTGGCCCTTTCC
TGTTGGTCATAACTCTGGCCAGGACTTCAACTATTCATTTTGGCATAGTCTACTTTTCACCTAA
TCTCCCCCTTCTCCCCCTTTATATATGTATTTTAAGCATAAAATAAAGGCAGTCAAGTCCTA

hide sequence

RefSeq Acc Id:

XM_006235273 ⟹ XP_006235335

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	161,778,709 - 161,820,725 (+)	NCBI
mRatBN7.2	3	141,318,454 - 141,360,468 (+)	NCBI
Rnor_6.0	3	148,327,970 - 148,369,971 (+)	NCBI
Rnor_5.0	3	154,730,957 - 154,773,179 (+)	NCBI

Sequence:

show sequence

TGGTGCATTTGACCGGTGTCTGAGTTCAAATTTTCAACCGTACTAGTTGTGTCCGGGAGCCGTC
TTAGGCGCTGGCTTCTTAGAGTTGGTGCAAGCTGAAGCCGGGAAAGTAGTGTGAAGAGGACGAT
CTATTGAGTGGAGTATTAGAATCCTGGAAAAAGTGTGTTCTGCACTAGGTGGGGCAATGGCCCA
AGTCCCAACAGCTTACTCGTTTGATGCCCCCACCGACTTTATCAACTTTTCATCTTTGGATGCT
GAAGAGGACACTGAAAATATAGACTCATGGTTTGATGAGAAGGCCAACTTGGAGAACAAGTTTC
TTCGGCAGAGTGGAATAGGAGAACCTTTTCAGGGGAAGACGTCCTTGAGAAAAGCCAAACTTCA
ACAAGGCTGTGTCACACCATTGAAGGCAGTTGATAACACTTACTACAAAGAGACAGAAAAGGAA
AATCTTCAGAAGCAATCTATCCCATCAAATGATTGTCCTTCCCTGAATGCTAAGAGAGCTGTGA
CAGGAACTACTCCCATCCAGCCTCAGAGAAGATCTGTTAGACTCTCTGCTCAGAAGGATTTGGA
GCAGAAAGAGAAAAACCATGTTGCCTCTGTTGAAATGAAAGCCAAGAGATGCACTGCTCCCACG
ACTGATTATCCCCCCAACAAGAAAATGAAAGTGTCTCATAAAAAGAAACCGGAGGAAGAAGAGG
AGGGCAGTGCTCCAGCTACTTCAAGAAAGGATGAAACTCTGGAGAGGGCCAAGGGCAAACACAC
TGTGCCTGCTGTGCCGCCTGCCAGGGAGAAGACTGTAAAGAGTACTGAAGAGCAGGAGTTAGAG
AAGAGTCTGAGAATGCAGCAGGAAGTGGTAGAGATGCGGAAGAAGAATGAAGAGTTTAAGAAGC
TGGCTCTTGCAGGGCCAGGGCAACCTGTGAAGAAATCCACCAGCCAGGTTACCAAGACAGTTGA
CTTTCACTTCCTCACAGATGAGAGAATCAAACAACATCCCAAGAGCCAGGAGGAGTATAAGGAA
GTGAACTTCATGTCCGAACTTCGAAAGCATTCTTCCACTCCTGCCCGAGGGACCAGAGGATGTA
CCATCATTAAGCCTTTCAATCTGTCCAAAGGAAAGAAAAGAACATTTGACGAAGCAGCGTCTAC
ATATGTGCCCATTGCACAGCAGGTTGAAGCCTTCCACAAACGAACCCCTAATCGATACCATCTG
AGGAACAAGAAGGACGAGAGCTTGTTACCCTCCAAACCTGTGAACAAGATTGTACGAGACCCCC
AGACCCCTATACTGCAGACCAAATACCGTGCAAGGGCTGTGACCTGCAAAAGTGCGGCAGAGAA
GGAGGCCGAGGAACTTGAGAAACTGCAACAATACAAATTCAAAGCACGGGAACTTGATCCCAGA
ATTTTTGAAAGTGGCCCCATCTTGCCCAAGAGACCACCTGTTAAGCCTCCTACCCAGCCTGTTG
GTTTTGATTTGGAAATTGAGAAACGAATTCATGAGCGAGAGTCAAAGAAAAAACCCGAAGATGA
ACAATTTGAATTTCATTCCAGACCTTGCCCTACTAAGATCTTGGAAGATGTTGTGGGTGTTCCT
GAAAAGAAGGTTATTCCAGCCACTGTCCCTAAGTCACCAGTTTTTGCACTGAAGAACAGGATCC
GAGTGCCTGTCAAAGAAGATGAGGAAGAGGAGAAACCAGTAGTGATAAAAGCTCAACCTGTGCC
ACATTATGGGGTGCCTTATAAACCCCCCATCCCAGAGACAAGAAATGTGGAGGTGTGCCCGTTC
TCCTTTGATACCCGGGACAAAGAACGCCAGTTGCAGAAGGAGAAAAAAATAAAAGAAATGCAGA
AAGGAGAGGTGCCCAAGTTCAAGGCACTTCCTGTGCCCCATTTTGACACCATTAACCTGCCAGA
GAAAAAGGTAAAGAATGCGACTCAAGCCGAGCCTTTCTCCTTGGAGACAGACAAGAGAGGTGCC
TACAAGGCCGAGATATGGAAGCACCAGCTGGAAGAAGAGCAGAAGCAGCAGAAGGAAGCAGCTT
GCTTCAAGGCTCGTCCAAACACTGTCATCTTCCAAGAGCCCTTTGTTCCCAAGAAAGAGAAAAA
ATCAGCTGCTGAGAACCCTTCTGGTTCTCTAGTTCAGGAACCTTTTCAGCTGGCCACCGAGAAG
AGAGCCAAAGAGCGGCAGGAGCTGGAGAAGAAAATGGCTGAGATGGAGGCCTGGAAACTGCAGC
AGTTGGCAGAAGTCAGGCAGCAGGAAGAGGAGCAGCAGAAGGAGGAGCTGGCCAGGCTCCGGAA
GGAACTGGTGCACAAGGCAAATCCAATCCGAAAGTACTCAGCAGTGGAGGTGAAATCCAGTGAG
CTGCCTCTGACCGTGCCGGTGTCTCCTAAGTTCTCCACTCGGTTCCAGTAGAAGCCGCCGCATG
TACACCACAGGCACAGAGAACACGTTTTCAGACTCACCTACGTGTGTGGAAACATACCTGAGAA
CTGTGGAGGCCAGGTTTTGAAGATCGAGTTACATGGAGACTTTGAAGCTAATGAGACAGCACTC
ATTTAGACTCATCAGACTTCCTGTAGTTATTTCCTGCAGACATTAGCTGGCCCTTTCCTGTTGG
TCATAACTCTGGCCAGGACTTCAACTATTCATTTTGGCATAGTCTACTTTTCACCTAATCTCCC
CCTTCTCCCCCTTTATATATGTATTTTAAGCATAAAATAAAGGCAGTCAAGTCCTA

hide sequence

RefSeq Acc Id:

XM_006235274 ⟹ XP_006235336

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	161,778,714 - 161,820,725 (+)	NCBI
mRatBN7.2	3	141,318,428 - 141,360,468 (+)	NCBI
Rnor_6.0	3	148,327,970 - 148,369,971 (+)	NCBI
Rnor_5.0	3	154,730,957 - 154,773,179 (+)	NCBI

Sequence:

show sequence

TGGTGCATTTGACCGGTGTCTGAGTTCAAATTTTCAACCGTACTAGTTGTGTCCGGGAGCCGTC
TTAGGCGCTGGCTTCTTAGAGTTGGTGCAAGCTGAAGCCGGGAAAGTAGTGTGAAGGTTCTTCA
TGAGAAGTGTCTGCCGGACTGTAATACTTCAAGAGACTTGAGAGCGAGATTGTGACTTTGAGGT
GAGGTTGTAAGAAGTGGACTTGAGAGACAAATTTACTATAGATCAGAGGACGATCTATTGAGTG
GAGTATTAGAATCCTGGAAAAAGTGTGTTCTGCACTAGGTGGGGCAATGGCCCAAGTCCCAACA
GCTTACTCGTTTGATGCCCCCACCGACTTTATCAACTTTTCATCTTTGGATGCTGAAGAGGACA
CTGAAAATATAGACTCATGGTTTGATGAGAAGGCCAACTTGGAGAACAAGTTTCTTCGGCAGAG
TGGAATAGGAGAACCTTTTCAGGGGAAGACGTCCTTGAGAAAAGCCAAACTTCAACAAGGCTGT
GTCACACCATTGAAGGCAGTTGATAACACTTACTACAAAGAGACAGAAAAGGAAAATCTTCAGA
AGCAATCTATCCCATCAAATGATTGTCCTTCCCTGAATGCTAAGAGAGCTGTGACAGGAACTAC
TCCCATCCAGCCTCAGAGAAGATCTGTTAGACTCTCTGCTCAGAAGGATTTGGAGCAGAAAGAG
AAAAACCATGTTGCCTCTGTTGAAATGAAAGCCAAGAGATGCACTGCTCCCACGACTGATTATC
CCCCCAACAAGAAAATGAAAGTGTCTCATAAAAAGAAACCGGAGGAAGAAGAGGAGGGCAGTGC
TCCAGCTACTTCAAGAAAGGATGAAACTCTGGAGAGGGCCAAGGGCAAACACACTGTGCCTGCT
GTGCCGCCTGCCAGGGAGAAGACTGTAAAGAGTACTGAAGAGCAGGAGTTAGAGAAGAGTCTGA
GAATGCAGCAGGAAGTGGTAGAGATGCGGAAGAAGAATGAAGAGTTTAAGAAGCTGGCTCTTGC
AGGGCCAGGGCAACCTGTGAAGAAATCCACCAGCCAGGTTACCAAGACAGTTGACTTTCACTTC
CTCACAGATGAGAGAATCAAACAACATCCCAAGAGCCAGGAGGAGTATAAGGAAGTGAACTTCA
TGTCCGAACTTCGAAAGCATTCTTCCACTCCTGCCCGAGGGACCAGAGGATGTACCATCATTAA
GCCTTTCAATCTGTCCAAAGGAAAGAAAAGAACATTTGACGAAGCAGCGTCTACATATGTGCCC
ATTGCACAGCAGGTTGAAGCCTTCCACAAACGAACCCCTAATCGATACCATCTGAGGAACAAGA
AGGACGAGAGCTTGTTACCCTCCAAACCTGTGAACAAGATTGTACGAGACCCCCAGACCCCTAT
ACTGCAGACCAAATACCGTGCAAGGGCTGTGACCTGCAAAAGTGCGGCAGAGAAGGAGGCCGAG
GAACTTGAGAAACTGCAACAATACAAATTCAAAGCACGGGAACTTGATCCCAGAATTTTTGAAA
GTGGCCCCATCTTGCCCAAGAGACCACCTGTTAAGCCTCCTACCCAGCCTGTTGGTTTTGATTT
GGAAATTGAGAAACGAATTCATGAGCGAGAGTCAAAGAAAAAACCCGAAGATGAACAATTTGAA
TTTCATTCCAGACCTTGCCCTACTAAGATCTTGGAAGATGTTGTGGGTGTTCCTGAAAAGAAGG
TTATTCCAGCCACTGTCCCTAAGTCACCAGTTTTTGCACTGAAGAACAGGATCCGAGTGCCTGT
CAAAGAAGATGAGGAAGAGGAGAAACCAGTAGTGATAAAAGCTCAACCTGTGCCACATTATGGG
GTGCCTTATAAACCCCCCATCCCAGAGACAAGAAATGTGGAGGTGTGCCCGTTCTCCTTTGATA
CCCGGGACAAAGAACGCCAGTTGCAGAAGGAGAAAAAAATAAAAGAAATGCAGAAAGGAGAGGT
GCCCAAGTTCAAGGCACTTCCTGTGCCCCATTTTGACACCATTAACCTGCCAGAGAAAAAGGTA
AAGAATGCGACTCAAGCCGAGCCTTTCTCCTTGGAGACAGACAAGAGAGGTGCCTACAAGGCCG
AGATATGGAAGCACCAGCTGGAAGAAGAGCAGAAGCAGCAGAAGGAAGCAGCTTGCTTCAAGGC
TCGTCCAAACACTGTCATCTTCCAAGAGCCCTTTGTTCCCAAGAAAGAGAAAAAATCAGCTGCT
GTTCAGGAACCTTTTCAGCTGGCCACCGAGAAGAGAGCCAAAGAGCGGCAGGAGCTGGAGAAGA
AAATGGCTGAGATGGAGGCCTGGAAACTGCAGCAGTTGGCAGAAGTCAGGCAGCAGGAAGAGGA
GCAGCAGAAGGAGGAGCTGGCCAGGCTCCGGAAGGAACTGGTGCACAAGGCAAATCCAATCCGA
AAGTACTCAGCAGTGGAGGTGAAATCCAGTGAGCTGCCTCTGACCGTGCCGGTGTCTCCTAAGT
TCTCCACTCGGTTCCAGTAGAAGCCGCCGCATGTACACCACAGGCACAGAGAACACGTTTTCAG
ACTCACCTACGTGTGTGGAAACATACCTGAGAACTGTGGAGGCCAGGTTTTGAAGATCGAGTTA
CATGGAGACTTTGAAGCTAATGAGACAGCACTCATTTAGACTCATCAGACTTCCTGTAGTTATT
TCCTGCAGACATTAGCTGGCCCTTTCCTGTTGGTCATAACTCTGGCCAGGACTTCAACTATTCA
TTTTGGCATAGTCTACTTTTCACCTAATCTCCCCCTTCTCCCCCTTTATATATGTATTTTAAGC
ATAAAATAAAGGCAGTCAAGTCCTA

hide sequence

RefSeq Acc Id:

XM_039105059 ⟹ XP_038960987

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	161,778,725 - 161,820,725 (+)	NCBI
mRatBN7.2	3	141,318,589 - 141,360,468 (+)	NCBI

RefSeq Acc Id:

XM_039105060 ⟹ XP_038960988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	161,778,899 - 161,820,725 (+)	NCBI
mRatBN7.2	3	141,318,589 - 141,360,468 (+)	NCBI

RefSeq Acc Id:

XM_039105061 ⟹ XP_038960989

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	161,778,725 - 161,820,725 (+)	NCBI
mRatBN7.2	3	141,318,589 - 141,360,468 (+)	NCBI

RefSeq Acc Id:

XM_039105062 ⟹ XP_038960990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	161,778,725 - 161,820,725 (+)	NCBI
mRatBN7.2	3	141,318,589 - 141,360,468 (+)	NCBI

RefSeq Acc Id:

XM_039105064 ⟹ XP_038960992

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	161,778,709 - 161,820,725 (+)	NCBI
mRatBN7.2	3	141,318,454 - 141,360,468 (+)	NCBI

RefSeq Acc Id:

XM_063283824 ⟹ XP_063139894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	161,778,725 - 161,820,725 (+)	NCBI

RefSeq Acc Id:

XM_063283825 ⟹ XP_063139895

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	161,778,714 - 161,820,725 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101260	(Get FASTA)	NCBI Sequence Viewer
	XP_006235332	(Get FASTA)	NCBI Sequence Viewer
	XP_006235334	(Get FASTA)	NCBI Sequence Viewer
	XP_006235335	(Get FASTA)	NCBI Sequence Viewer
	XP_006235336	(Get FASTA)	NCBI Sequence Viewer
	XP_038960987	(Get FASTA)	NCBI Sequence Viewer
	XP_038960988	(Get FASTA)	NCBI Sequence Viewer
	XP_038960989	(Get FASTA)	NCBI Sequence Viewer
	XP_038960990	(Get FASTA)	NCBI Sequence Viewer
	XP_038960992	(Get FASTA)	NCBI Sequence Viewer
	XP_063139894	(Get FASTA)	NCBI Sequence Viewer
	XP_063139895	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL86036	(Get FASTA)	NCBI Sequence Viewer
	EDL86037	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010851.4
	ENSRNOP00000068619.2
	ENSRNOP00000097456.1

RefSeq Acc Id:

NP_001101260 ⟸ NM_001107790

- UniProtKB:

D3ZA78 (UniProtKB/TrEMBL), A6KHR8 (UniProtKB/TrEMBL), A0A8I6ARV3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAQVPTAYSFDAPTDFINFSSLDAEEDTENIDSWFDEKANLENKFLRQSGIGEPFQGKTSLRKA
KLQQGCVTPLKAVDNTYYKETEKENLQKQSIPSNDCPSLNAKRAVTGTTPIQPQRRSVRLSAQK
DLEQKEKNHVASVEMKAKRCTAPTTDYPPNKKMKVSHKKKPEEEEEGSAPATSRKDETLERAKG
KHTVPAVPPAREKTVKSTEEQELEKSLRMQQEVVEMRKKNEEFKKLALAGPGQPVKKSTSQVTK
TVDFHFLTDERIKQHPKSQEEYKEVNFMSELRKHSSTPARGTRGCTIIKPFNLSKGKKRTFDEA
ASTYVPIAQQVEAFHKRTPNRYHLRNKKDESLLPSKPVNKIVRDPQTPILQTKYRARAVTCKSA
AEKEAEELEKLQQYKFKARELDPRIFESGPILPKRPPVKPPTQPVGFDLEIEKRIHERESKKKP
EDEQFEFHSRPCPTKILEDVVGVPEKKVIPATVPKSPVFALKNRIRVPVKEDEEEEKPVVIKAQ
PVPHYGVPYKPPIPETRNVEVCPFSFDTRDKERQLQKEKKIKEMQKGEVPKFKALPVPHFDTIN
LPEKKVKNATQAEPFSLETDKRGAYKAEIWKHQLEEEQKQQKEAACFKARPNTVIFQEPFVPKK
EKKSAAENPSGSLVQEPFQLATEKRAKERQELEKKMAEMEAWKLQQLAEVRQQEEEQQKEELAR
LRKELVHKANPIRKYSAVEVKSSELPLTVPVSPKFSTRFQ

hide sequence

RefSeq Acc Id:	XP_006235335 ⟸ XM_006235273
- Peptide Label:	isoform X1
- UniProtKB:	D3ZA78 (UniProtKB/TrEMBL), A6KHR8 (UniProtKB/TrEMBL), A0A8I6ARV3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQVPTAYSFDAPTDFINFSSLDAEEDTENIDSWFDEKANLENKFLRQSGIGEPFQGKTSLRKA KLQQGCVTPLKAVDNTYYKETEKENLQKQSIPSNDCPSLNAKRAVTGTTPIQPQRRSVRLSAQK DLEQKEKNHVASVEMKAKRCTAPTTDYPPNKKMKVSHKKKPEEEEEGSAPATSRKDETLERAKG KHTVPAVPPAREKTVKSTEEQELEKSLRMQQEVVEMRKKNEEFKKLALAGPGQPVKKSTSQVTK TVDFHFLTDERIKQHPKSQEEYKEVNFMSELRKHSSTPARGTRGCTIIKPFNLSKGKKRTFDEA ASTYVPIAQQVEAFHKRTPNRYHLRNKKDESLLPSKPVNKIVRDPQTPILQTKYRARAVTCKSA AEKEAEELEKLQQYKFKARELDPRIFESGPILPKRPPVKPPTQPVGFDLEIEKRIHERESKKKP EDEQFEFHSRPCPTKILEDVVGVPEKKVIPATVPKSPVFALKNRIRVPVKEDEEEEKPVVIKAQ PVPHYGVPYKPPIPETRNVEVCPFSFDTRDKERQLQKEKKIKEMQKGEVPKFKALPVPHFDTIN LPEKKVKNATQAEPFSLETDKRGAYKAEIWKHQLEEEQKQQKEAACFKARPNTVIFQEPFVPKK EKKSAAENPSGSLVQEPFQLATEKRAKERQELEKKMAEMEAWKLQQLAEVRQQEEEQQKEELAR LRKELVHKANPIRKYSAVEVKSSELPLTVPVSPKFSTRFQ hide sequence

RefSeq Acc Id:	XP_006235332 ⟸ XM_006235270
- Peptide Label:	isoform X1
- UniProtKB:	D3ZA78 (UniProtKB/TrEMBL), A6KHR8 (UniProtKB/TrEMBL), A0A8I6ARV3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQVPTAYSFDAPTDFINFSSLDAEEDTENIDSWFDEKANLENKFLRQSGIGEPFQGKTSLRKA KLQQGCVTPLKAVDNTYYKETEKENLQKQSIPSNDCPSLNAKRAVTGTTPIQPQRRSVRLSAQK DLEQKEKNHVASVEMKAKRCTAPTTDYPPNKKMKVSHKKKPEEEEEGSAPATSRKDETLERAKG KHTVPAVPPAREKTVKSTEEQELEKSLRMQQEVVEMRKKNEEFKKLALAGPGQPVKKSTSQVTK TVDFHFLTDERIKQHPKSQEEYKEVNFMSELRKHSSTPARGTRGCTIIKPFNLSKGKKRTFDEA ASTYVPIAQQVEAFHKRTPNRYHLRNKKDESLLPSKPVNKIVRDPQTPILQTKYRARAVTCKSA AEKEAEELEKLQQYKFKARELDPRIFESGPILPKRPPVKPPTQPVGFDLEIEKRIHERESKKKP EDEQFEFHSRPCPTKILEDVVGVPEKKVIPATVPKSPVFALKNRIRVPVKEDEEEEKPVVIKAQ PVPHYGVPYKPPIPETRNVEVCPFSFDTRDKERQLQKEKKIKEMQKGEVPKFKALPVPHFDTIN LPEKKVKNATQAEPFSLETDKRGAYKAEIWKHQLEEEQKQQKEAACFKARPNTVIFQEPFVPKK EKKSAAENPSGSLVQEPFQLATEKRAKERQELEKKMAEMEAWKLQQLAEVRQQEEEQQKEELAR LRKELVHKANPIRKYSAVEVKSSELPLTVPVSPKFSTRFQ hide sequence

RefSeq Acc Id:	XP_006235336 ⟸ XM_006235274
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JT92 (UniProtKB/TrEMBL), A0A8I6ARV3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQVPTAYSFDAPTDFINFSSLDAEEDTENIDSWFDEKANLENKFLRQSGIGEPFQGKTSLRKA KLQQGCVTPLKAVDNTYYKETEKENLQKQSIPSNDCPSLNAKRAVTGTTPIQPQRRSVRLSAQK DLEQKEKNHVASVEMKAKRCTAPTTDYPPNKKMKVSHKKKPEEEEEGSAPATSRKDETLERAKG KHTVPAVPPAREKTVKSTEEQELEKSLRMQQEVVEMRKKNEEFKKLALAGPGQPVKKSTSQVTK TVDFHFLTDERIKQHPKSQEEYKEVNFMSELRKHSSTPARGTRGCTIIKPFNLSKGKKRTFDEA ASTYVPIAQQVEAFHKRTPNRYHLRNKKDESLLPSKPVNKIVRDPQTPILQTKYRARAVTCKSA AEKEAEELEKLQQYKFKARELDPRIFESGPILPKRPPVKPPTQPVGFDLEIEKRIHERESKKKP EDEQFEFHSRPCPTKILEDVVGVPEKKVIPATVPKSPVFALKNRIRVPVKEDEEEEKPVVIKAQ PVPHYGVPYKPPIPETRNVEVCPFSFDTRDKERQLQKEKKIKEMQKGEVPKFKALPVPHFDTIN LPEKKVKNATQAEPFSLETDKRGAYKAEIWKHQLEEEQKQQKEAACFKARPNTVIFQEPFVPKK EKKSAAVQEPFQLATEKRAKERQELEKKMAEMEAWKLQQLAEVRQQEEEQQKEELARLRKELVH KANPIRKYSAVEVKSSELPLTVPVSPKFSTRFQ hide sequence

RefSeq Acc Id:	XP_006235334 ⟸ XM_006235272
- Peptide Label:	isoform X1
- UniProtKB:	D3ZA78 (UniProtKB/TrEMBL), A6KHR8 (UniProtKB/TrEMBL), A0A8I6ARV3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAQVPTAYSFDAPTDFINFSSLDAEEDTENIDSWFDEKANLENKFLRQSGIGEPFQGKTSLRKA KLQQGCVTPLKAVDNTYYKETEKENLQKQSIPSNDCPSLNAKRAVTGTTPIQPQRRSVRLSAQK DLEQKEKNHVASVEMKAKRCTAPTTDYPPNKKMKVSHKKKPEEEEEGSAPATSRKDETLERAKG KHTVPAVPPAREKTVKSTEEQELEKSLRMQQEVVEMRKKNEEFKKLALAGPGQPVKKSTSQVTK TVDFHFLTDERIKQHPKSQEEYKEVNFMSELRKHSSTPARGTRGCTIIKPFNLSKGKKRTFDEA ASTYVPIAQQVEAFHKRTPNRYHLRNKKDESLLPSKPVNKIVRDPQTPILQTKYRARAVTCKSA AEKEAEELEKLQQYKFKARELDPRIFESGPILPKRPPVKPPTQPVGFDLEIEKRIHERESKKKP EDEQFEFHSRPCPTKILEDVVGVPEKKVIPATVPKSPVFALKNRIRVPVKEDEEEEKPVVIKAQ PVPHYGVPYKPPIPETRNVEVCPFSFDTRDKERQLQKEKKIKEMQKGEVPKFKALPVPHFDTIN LPEKKVKNATQAEPFSLETDKRGAYKAEIWKHQLEEEQKQQKEAACFKARPNTVIFQEPFVPKK EKKSAAENPSGSLVQEPFQLATEKRAKERQELEKKMAEMEAWKLQQLAEVRQQEEEQQKEELAR LRKELVHKANPIRKYSAVEVKSSELPLTVPVSPKFSTRFQ hide sequence

Ensembl Acc Id:

ENSRNOP00000010851 ⟸ ENSRNOT00000010851

Ensembl Acc Id:

ENSRNOP00000068619 ⟸ ENSRNOT00000088481

RefSeq Acc Id:	XP_038960992 ⟸ XM_039105064
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JT92 (UniProtKB/TrEMBL), A0A8I6ARV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960987 ⟸ XM_039105059
- Peptide Label:	isoform X1
- UniProtKB:	D3ZA78 (UniProtKB/TrEMBL), A6KHR8 (UniProtKB/TrEMBL), A0A8I6ARV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960989 ⟸ XM_039105061
- Peptide Label:	isoform X1
- UniProtKB:	D3ZA78 (UniProtKB/TrEMBL), A6KHR8 (UniProtKB/TrEMBL), A0A8I6ARV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960988 ⟸ XM_039105060
- Peptide Label:	isoform X1
- UniProtKB:	D3ZA78 (UniProtKB/TrEMBL), A6KHR8 (UniProtKB/TrEMBL), A0A8I6ARV3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038960990 ⟸ XM_039105062
- Peptide Label:	isoform X1
- UniProtKB:	D3ZA78 (UniProtKB/TrEMBL), A6KHR8 (UniProtKB/TrEMBL), A0A8I6ARV3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000097456 ⟸ ENSRNOT00000104440

RefSeq Acc Id:	XP_063139895 ⟸ XM_063283825
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ARV3 (UniProtKB/TrEMBL), A0A0G2JT92 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139894 ⟸ XM_063283824
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ARV3 (UniProtKB/TrEMBL), A0A0G2JT92 (UniProtKB/TrEMBL)

Protein Domains

Aurora-A binding TPX2 C-terminal TPX2 central

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZA78-F1-model_v2	AlphaFold	D3ZA78	1-744	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692566

Promoter ID:

EPDNEW_R3077

Type:

initiation region

Name:

Tpx2_1

Description:

TPX2, microtubule nucleation factor

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	148,328,014 - 148,328,074	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311894	AgrOrtholog
BioCyc Gene	G2FUF-47246	BioCyc
Ensembl Genes	ENSRNOG00000008165	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000010851.6	UniProtKB/TrEMBL
	ENSRNOT00000088481.2	UniProtKB/TrEMBL
	ENSRNOT00000104440.1	UniProtKB/TrEMBL
InterPro	Aurora-A-bd	UniProtKB/TrEMBL
	TPX2_central_dom	UniProtKB/TrEMBL
	TPX2_dom_C	UniProtKB/TrEMBL
	Xklp2_targeting_prot	UniProtKB/TrEMBL
KEGG Report	rno:311546	UniProtKB/TrEMBL
NCBI Gene	311546	ENTREZGENE
PANTHER	PTHR14326	UniProtKB/TrEMBL
	TARGETING PROTEIN FOR XKLP2	UniProtKB/TrEMBL
Pfam	Aurora-A_bind	UniProtKB/TrEMBL
	TPX2	UniProtKB/TrEMBL
	TPX2_importin	UniProtKB/TrEMBL
PhenoGen	Tpx2	PhenoGen
RatGTEx	ENSRNOG00000008165	RatGTEx
UniProt	A0A0G2JT92	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ARV3	ENTREZGENE, UniProtKB/TrEMBL
	A6KHR8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZA78	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-05	Tpx2	TPX2, microtubule nucleation factor	Tpx2	TPX2, microtubule-associated	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Tpx2	TPX2, microtubule-associated	Tpx2	TPX2, microtubule-associated, homolog (Xenopus laevis)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-11-11	Tpx2	TPX2, microtubule-associated, homolog (Xenopus laevis)	Tpx2	TPX2, microtubule-associated protein homolog (Xenopus laevis)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Tpx2	TPX2, microtubule-associated protein homolog (Xenopus laevis)	Tpx2_predicted	TPX2, microtubule-associated protein homolog (Xenopus laevis) (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Tpx2_predicted	TPX2, microtubule-associated protein homolog (Xenopus laevis) (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD