Gstcd (glutathione S-transferase, C-terminal domain containing) - Rat Genome Database

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Gene: Gstcd (glutathione S-transferase, C-terminal domain containing) Rattus norvegicus
Analyze
Symbol: Gstcd
Name: glutathione S-transferase, C-terminal domain containing
RGD ID: 1311822
Description: Predicted to be active in cytoplasm. Orthologous to human GSTCD (glutathione S-transferase C-terminal domain containing); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: glutathione S-transferase C-terminal domain-containing protein; glutathione S-transferase C-terminal domain-containing protein-like; LOC108350113; LOC310855; RGD1311822; similar to hypothetical protein FLJ13273
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22221,499,083 - 221,591,888 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2221,499,083 - 221,591,857 (-)Ensembl
Rnor_6.02238,109,758 - 238,253,326 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2238,109,490 - 238,253,287 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02256,647,193 - 256,790,462 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42230,514,129 - 230,610,809 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12230,502,132 - 230,597,223 (-)NCBI
Celera2213,731,814 - 213,824,499 (-)NCBICelera
Cytogenetic Map2q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19056867   PMID:24058608  


Genomics

Comparative Map Data
Gstcd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22221,499,083 - 221,591,888 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2221,499,083 - 221,591,857 (-)Ensembl
Rnor_6.02238,109,758 - 238,253,326 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2238,109,490 - 238,253,287 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02256,647,193 - 256,790,462 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42230,514,129 - 230,610,809 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12230,502,132 - 230,597,223 (-)NCBI
Celera2213,731,814 - 213,824,499 (-)NCBICelera
Cytogenetic Map2q43NCBI
GSTCD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384105,708,784 - 105,847,725 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl4105,708,778 - 105,847,725 (+)EnsemblGRCh38hg38GRCh38
GRCh374106,629,941 - 106,768,882 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364106,849,390 - 106,988,327 (+)NCBINCBI36hg18NCBI36
Celera4103,929,094 - 104,068,013 (+)NCBI
Cytogenetic Map4q24NCBI
HuRef4102,364,471 - 102,503,550 (+)NCBIHuRef
CHM1_14106,606,735 - 106,745,677 (+)NCBICHM1_1
T2T-CHM13v2.04109,019,925 - 109,158,852 (+)NCBI
Gstcd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393132,687,511 - 132,797,800 (-)NCBIGRCm39mm39
GRCm39 Ensembl3132,687,513 - 132,797,794 (-)Ensembl
GRCm383132,981,750 - 133,092,039 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3132,981,752 - 133,092,033 (-)EnsemblGRCm38mm10GRCm38
MGSCv373132,645,514 - 132,754,704 (-)NCBIGRCm37mm9NCBIm37
MGSCv363132,919,856 - 133,029,046 (-)NCBImm8
Celera3139,406,859 - 139,516,166 (-)NCBICelera
Cytogenetic Map3G3NCBI
Gstcd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554963,444,310 - 3,565,414 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554963,447,400 - 3,564,540 (-)NCBIChiLan1.0ChiLan1.0
GSTCD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.14108,786,829 - 108,925,618 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4108,786,838 - 108,925,618 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0498,177,114 - 98,315,988 (+)NCBIMhudiblu_PPA_v0panPan3
GSTCD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13226,540,237 - 26,665,649 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3226,540,931 - 26,663,260 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3215,360,982 - 15,486,180 (-)NCBI
ROS_Cfam_1.03226,771,037 - 26,897,517 (+)NCBI
ROS_Cfam_1.0 Ensembl3226,771,373 - 26,897,426 (+)Ensembl
UMICH_Zoey_3.13226,767,811 - 26,893,964 (+)NCBI
UNSW_CanFamBas_1.03226,513,698 - 26,638,836 (+)NCBI
UU_Cfam_GSD_1.03213,223,757 - 13,349,014 (-)NCBI
Gstcd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530114,492,983 - 14,520,741 (-)NCBI
SpeTri2.0NW_0049368141,210,256 - 1,237,883 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GSTCD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8115,902,994 - 116,031,862 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18115,902,995 - 116,031,876 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28124,317,477 - 124,437,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GSTCD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1753,750,836 - 53,881,057 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl753,750,628 - 53,883,001 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603732,369,687 - 32,501,594 (+)NCBIVero_WHO_p1.0
Gstcd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248302,971,738 - 3,100,491 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248302,982,971 - 3,100,486 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH132512  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22221,590,735 - 221,590,955 (+)MAPPERmRatBN7.2
Rnor_6.02238,252,166 - 238,252,385NCBIRnor6.0
Rnor_5.02256,789,341 - 256,789,560UniSTSRnor5.0
RGSC_v3.42230,609,688 - 230,609,907UniSTSRGSC3.4
Celera2213,823,378 - 213,823,597UniSTS
RH 3.4 Map21553.0UniSTS
Cytogenetic Map2q43UniSTS
RH141523  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22221,499,933 - 221,500,142 (+)MAPPERmRatBN7.2
Rnor_6.02238,110,608 - 238,110,816NCBIRnor6.0
Rnor_5.02256,648,043 - 256,648,251UniSTSRnor5.0
RGSC_v3.42230,514,979 - 230,515,187UniSTSRGSC3.4
Celera2213,732,664 - 213,732,872UniSTS
RH 3.4 Map21549.0UniSTS
Cytogenetic Map2q43UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
1359019Hrtrt19Heart rate QTL 192.9heart pumping trait (VT:2000009)heart rate (CMO:0000002)2219753301226277316Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:29
Interacting mature miRNAs:32
Transcripts:ENSRNOT00000037154
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 2 9
Low 3 43 57 41 19 41 8 8 68 33 32 11 8
Below cutoff 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001395013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006233324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017590936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039102461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000037154   ⟹   ENSRNOP00000035041
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2221,499,479 - 221,591,857 (-)Ensembl
Rnor_6.0 Ensembl2238,109,758 - 238,253,287 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000086303   ⟹   ENSRNOP00000073658
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2221,499,083 - 221,591,857 (-)Ensembl
Rnor_6.0 Ensembl2238,109,490 - 238,246,931 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107379   ⟹   ENSRNOP00000088663
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2221,499,732 - 221,591,652 (-)Ensembl
RefSeq Acc Id: NM_001107725   ⟹   NP_001101195
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22221,499,083 - 221,591,857 (-)NCBI
Rnor_6.02238,109,758 - 238,253,287 (-)NCBI
Rnor_5.02256,647,193 - 256,790,462 (-)NCBI
RGSC_v3.42230,514,129 - 230,610,809 (-)RGD
Celera2213,731,814 - 213,824,499 (-)RGD
Sequence:
RefSeq Acc Id: XM_017590936   ⟹   XP_017446425
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22221,499,732 - 221,591,888 (-)NCBI
Rnor_6.02238,110,406 - 238,253,326 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039102454   ⟹   XP_038958382
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22221,499,732 - 221,591,647 (-)NCBI
RefSeq Acc Id: XM_039102455   ⟹   XP_038958383
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22221,499,732 - 221,591,257 (-)NCBI
RefSeq Acc Id: XM_039102456   ⟹   XP_038958384
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22221,499,732 - 221,591,647 (-)NCBI
RefSeq Acc Id: XM_039102457   ⟹   XP_038958385
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22221,499,732 - 221,591,888 (-)NCBI
RefSeq Acc Id: XM_039102458   ⟹   XP_038958386
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22221,503,533 - 221,591,888 (-)NCBI
RefSeq Acc Id: XM_039102459   ⟹   XP_038958387
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22221,554,923 - 221,591,840 (-)NCBI
RefSeq Acc Id: XM_039102460   ⟹   XP_038958388
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22221,515,706 - 221,591,840 (-)NCBI
RefSeq Acc Id: XM_039102461   ⟹   XP_038958389
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.22221,499,732 - 221,581,313 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001101195   ⟸   NM_001107725
- Sequence:
RefSeq Acc Id: XP_017446425   ⟸   XM_017590936
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K635 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073658   ⟸   ENSRNOT00000086303
RefSeq Acc Id: ENSRNOP00000035041   ⟸   ENSRNOT00000037154
RefSeq Acc Id: XP_038958385   ⟸   XM_039102457
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038958382   ⟸   XM_039102454
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958384   ⟸   XM_039102456
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958383   ⟸   XM_039102455
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038958389   ⟸   XM_039102461
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038958386   ⟸   XM_039102458
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038958388   ⟸   XM_039102460
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038958387   ⟸   XM_039102459
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000088663   ⟸   ENSRNOT00000107379
Protein Domains
GST C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K635-F1-model_v2 AlphaFold A0A0G2K635 1-630 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311822 AgrOrtholog
BioCyc Gene G2FUF-51168 BioCyc
Ensembl Genes ENSRNOG00000011669 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000035041 ENTREZGENE
  ENSRNOP00000035041.4 UniProtKB/TrEMBL
  ENSRNOP00000073658.2 UniProtKB/TrEMBL
  ENSRNOP00000088663 ENTREZGENE
  ENSRNOP00000088663.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000037154 ENTREZGENE
  ENSRNOT00000037154.5 UniProtKB/TrEMBL
  ENSRNOT00000086303.2 UniProtKB/TrEMBL
  ENSRNOT00000107379 ENTREZGENE
  ENSRNOT00000107379.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.150 UniProtKB/TrEMBL
InterPro Glutathione-S-Trfase_C-like UniProtKB/TrEMBL
  Glutathione-S-Trfase_C_sf UniProtKB/TrEMBL
  GST_C UniProtKB/TrEMBL
  Methyltranfer_dom UniProtKB/TrEMBL
  SAM-dependent_MTases-like UniProtKB/TrEMBL
KEGG Report rno:310855 UniProtKB/TrEMBL
NCBI Gene 310855 ENTREZGENE
Pfam GST_C_3 UniProtKB/TrEMBL
  Methyltransf_31 UniProtKB/TrEMBL
  Methyltransf_32 UniProtKB/TrEMBL
PhenoGen Gstcd PhenoGen
PROSITE GST_CTER UniProtKB/TrEMBL
Superfamily-SCOP GST_C_like UniProtKB/TrEMBL
  SSF53335 UniProtKB/TrEMBL
UniProt A0A0G2K635 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AB77_RAT UniProtKB/TrEMBL
  D4A322_RAT UniProtKB/TrEMBL
UniProt Secondary D4AC90 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Gstcd  glutathione S-transferase, C-terminal domain containing  LOC108350113  glutathione S-transferase C-terminal domain-containing protein-like  Data Merged 737654 PROVISIONAL
2016-08-02 LOC108350113  glutathione S-transferase C-terminal domain-containing protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-02-27 Gstcd  glutathione S-transferase, C-terminal domain containing  RGD1311822_predicted  similar to hypothetical protein FLJ13273 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 RGD1311822_predicted  similar to hypothetical protein FLJ13273 (predicted)  LOC310855_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC310855_predicted  similar to hypothetical protein FLJ13273 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL