Arhgef38 (Rho guanine nucleotide exchange factor 38) - Rat Genome Database

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Gene: Arhgef38 (Rho guanine nucleotide exchange factor 38) Rattus norvegicus
Analyze
Symbol: Arhgef38
Name: Rho guanine nucleotide exchange factor 38
RGD ID: 1311728
Description: Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in cytoplasm and synapse. Orthologous to human ARHGEF38 (Rho guanine nucleotide exchange factor 38); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102556447; LOC295449; RGD1311728; Rho guanine nucleotide exchange factor (GEF) 38; rho guanine nucleotide exchange factor 38-like; similar to hypothetical protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82224,284,238 - 224,413,974 (-)NCBIGRCr8
mRatBN7.22221,610,212 - 221,739,841 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2221,613,070 - 221,740,079 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02238,274,040 - 238,370,401 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2238,276,045 - 238,369,692 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02256,811,559 - 256,913,146 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42230,633,772 - 230,759,774 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12230,620,511 - 230,649,473 (-)NCBI
Celera2213,845,457 - 213,967,786 (-)NCBICelera
Cytogenetic Map2q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA)
synapse  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Arhgef38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82224,284,238 - 224,413,974 (-)NCBIGRCr8
mRatBN7.22221,610,212 - 221,739,841 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2221,613,070 - 221,740,079 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02238,274,040 - 238,370,401 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2238,276,045 - 238,369,692 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02256,811,559 - 256,913,146 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42230,633,772 - 230,759,774 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12230,620,511 - 230,649,473 (-)NCBI
Celera2213,845,457 - 213,967,786 (-)NCBICelera
Cytogenetic Map2q43NCBI
ARHGEF38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384105,552,620 - 105,682,566 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4105,552,620 - 105,708,093 (+)EnsemblGRCh38hg38GRCh38
GRCh374106,473,777 - 106,602,071 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364106,693,226 - 106,772,286 (+)NCBINCBI36Build 36hg18NCBI36
Celera4103,772,904 - 103,851,995 (+)NCBICelera
Cytogenetic Map4q24NCBI
HuRef4102,208,279 - 102,336,601 (+)NCBIHuRef
CHM1_14106,450,584 - 106,578,865 (+)NCBICHM1_1
T2T-CHM13v2.04108,863,418 - 108,993,730 (+)NCBIT2T-CHM13v2.0
Arhgef38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393132,818,039 - 132,940,710 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3132,818,039 - 132,940,710 (-)EnsemblGRCm39 Ensembl
GRCm383133,112,278 - 133,234,949 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3133,112,278 - 133,234,949 (-)EnsemblGRCm38mm10GRCm38
MGSCv373132,822,493 - 132,897,853 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363133,096,835 - 133,172,195 (-)NCBIMGSCv36mm8
Celera3139,581,516 - 139,656,494 (-)NCBICelera
Cytogenetic Map3G3NCBI
cM Map361.57NCBI
Arhgef38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554963,586,345 - 3,700,602 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554963,584,693 - 3,700,620 (-)NCBIChiLan1.0ChiLan1.0
ARHGEF38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23103,638,613 - 103,765,200 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14103,931,060 - 104,060,385 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0498,018,383 - 98,149,244 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14108,631,033 - 108,759,240 (+)NCBIpanpan1.1PanPan1.1panPan2
ARHGEF38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13226,384,144 - 26,508,708 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3226,383,519 - 26,506,435 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3215,517,212 - 15,641,583 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03226,595,764 - 26,739,765 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3226,595,229 - 26,738,173 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13226,613,211 - 26,737,175 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03226,358,509 - 26,482,683 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03213,380,270 - 13,504,486 (-)NCBIUU_Cfam_GSD_1.0
Arhgef38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530114,679,804 - 14,806,986 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493675290,984 - 216,243 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493675290,543 - 216,384 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGEF38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8116,062,408 - 116,199,137 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18116,063,725 - 116,199,274 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28124,537,133 - 124,576,845 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGEF38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1753,595,652 - 53,721,492 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603732,214,443 - 32,340,110 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgef38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248303,119,127 - 3,246,112 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arhgef38
1048 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:32
Count of miRNA genes:29
Interacting mature miRNAs:31
Transcripts:ENSRNOT00000041583
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2161699179222436696Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2168358098223265385Rat
2301408Kidm36Kidney mass QTL 360.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2190613715226808892Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2217139753236660713Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2141194931223265385Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2141194931223265385Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)281754530227146641Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)218960362228801039Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1581499Esta2Estrogen-induced thymic atrophy QTL 2thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2189599258226936289Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
9589044Scfw1Subcutaneous fat weight QTL 15.80.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)2182171407227171407Rat
8694435Bw166Body weight QTL 16614.080.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)2182171407227171407Rat
61417Cia10Collagen induced arthritis QTL 103.4joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)2179946951224946951Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)281754530222436696Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
8694383Bw158Body weight QTL 1587.690.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)2182171407227171407Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2221136523241305619Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2164073756227146641Rat
8694194Abfw1Abdominal fat weight QTL 111.70.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)2182171407227171407Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
2300189Bmd48Bone mineral density QTL 485.80.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)2179335906224335906Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2157142078226277316Rat
1359019Hrtrt19Heart rate QTL 192.9heart pumping trait (VT:2000009)heart rate (CMO:0000002)2219753301226277316Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 13 59 41 47 17 20 17 3 117 46 49 45 57 30

Sequence


Ensembl Acc Id: ENSRNOT00000041583   ⟹   ENSRNOP00000050451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2221,613,070 - 221,740,079 (-)Ensembl
Rnor_6.0 Ensembl2238,276,045 - 238,369,692 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000055537   ⟹   ENSRNOP00000052399
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl2221,613,070 - 221,740,079 (-)Ensembl
Rnor_6.0 Ensembl2238,385,027 - 238,468,435 (-)Ensembl
RefSeq Acc Id: NM_001427634   ⟹   NP_001414563
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82224,284,238 - 224,413,974 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001414563 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000050451.6
  ENSRNOP00000052399.3
Ensembl Acc Id: ENSRNOP00000050451   ⟸   ENSRNOT00000041583
Ensembl Acc Id: ENSRNOP00000052399   ⟸   ENSRNOT00000055537
RefSeq Acc Id: NP_001414563   ⟸   NM_001427634
- UniProtKB: F1LUU6 (UniProtKB/TrEMBL)
Protein Domains
BAR   DH   SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AD85-F1-model_v2 AlphaFold D4AD85 1-219 view protein structure
AF-F1LUU6-F1-model_v2 AlphaFold F1LUU6 1-706 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311728 AgrOrtholog
BioCyc Gene G2FUF-51166 BioCyc
Ensembl Genes ENSRNOG00000023965 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000036958 Ensembl
Ensembl Transcript ENSRNOT00000041583.6 UniProtKB/TrEMBL
  ENSRNOT00000055537.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1270.60 UniProtKB/TrEMBL
  1.20.900.10 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro AH/BAR_dom_sf UniProtKB/TrEMBL
  BAR_dom UniProtKB/TrEMBL
  DBL_dom_sf UniProtKB/TrEMBL
  DH-domain UniProtKB/TrEMBL
  Dynamin-Rho_GEF UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene 295449 ENTREZGENE
PANTHER NUCLEAR FUSION PROTEIN FUS2 UniProtKB/TrEMBL
  RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 38 UniProtKB/TrEMBL
Pfam BAR UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
  SH3_2 UniProtKB/TrEMBL
  SH3_9 UniProtKB/TrEMBL
PhenoGen Arhgef38 PhenoGen
PROSITE BAR UniProtKB/TrEMBL
  DH_2 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023965 RatGTEx
  ENSRNOG00000036958 RatGTEx
SMART BAR UniProtKB/TrEMBL
  RhoGEF UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF103657 UniProtKB/TrEMBL
  SSF48065 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt D4AD85_RAT UniProtKB/TrEMBL
  F1LUU6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Arhgef38  Rho guanine nucleotide exchange factor 38  LOC102556447  rho guanine nucleotide exchange factor 38-like  Data merged from RGD:7710946 737654 PROVISIONAL
2015-11-19 Arhgef38  Rho guanine nucleotide exchange factor 38  Arhgef38  Rho guanine nucleotide exchange factor (GEF) 38  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-18 LOC102556447  rho guanine nucleotide exchange factor 38-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-11-22 Arhgef38  Rho guanine nucleotide exchange factor (GEF) 38  RGD1311728  similar to hypothetical protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1311728  similar to hypothetical protein   RGD1311728_predicted  similar to hypothetical protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1311728_predicted  similar to hypothetical protein (predicted)  LOC295449_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC295449_predicted  similar to hypothetical protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL