Cep295 (centrosomal protein 295) - Rat Genome Database

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Gene: Cep295 (centrosomal protein 295) Rattus norvegicus
Analyze
Symbol: Cep295
Name: centrosomal protein 295
RGD ID: 1311723
Description: Predicted to enable microtubule binding activity. Predicted to be involved in several processes, including centriole replication; positive regulation of protein acetylation; and regulation of centrosome duplication. Predicted to be located in cytoplasm; mitotic spindle microtubule; and plasma membrane. Predicted to be active in centriole; centrosome; and cytosol. Orthologous to human CEP295 (centrosomal protein 295); INTERACTS WITH acetamide; bisphenol A; decabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: centrosomal protein KIAA1731 homolog; centrosomal protein of 295 kDa; hypothetical protein LOC100360419; hypothetical protein LOC100365060; hypothetical protein LOC363018; KIAA1731; KIAA1731-like protein; LOC363018; RGD1311723; similar to KIAA1731 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,437,967 - 20,475,968 (-)NCBIGRCr8
mRatBN7.2812,156,568 - 12,194,542 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl812,156,554 - 12,194,552 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx816,138,298 - 16,176,106 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0814,436,048 - 14,473,858 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0812,419,524 - 12,457,404 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0813,871,065 - 13,909,249 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl813,871,213 - 13,909,188 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0813,810,841 - 13,848,730 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4812,119,277 - 12,148,950 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1812,117,148 - 12,148,935 (-)NCBI
Celera813,624,275 - 13,662,157 (-)NCBICelera
Cytogenetic Map8q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centriole  (IBA,IEA,ISO,ISS)
centrosome  (IBA,IEA,ISO,ISS)
cytoplasm  (ISO)
cytoskeleton  (ISO)
cytosol  (IBA,IEA,ISO)
mitotic spindle microtubule  (IEA,ISO,ISS)
plasma membrane  (IEA,ISO)

Molecular Function
microtubule binding  (IBA,IEA,ISO,ISS)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:20844083   PMID:21399614   PMID:25131205   PMID:27185865  


Genomics

Comparative Map Data
Cep295
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,437,967 - 20,475,968 (-)NCBIGRCr8
mRatBN7.2812,156,568 - 12,194,542 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl812,156,554 - 12,194,552 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx816,138,298 - 16,176,106 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0814,436,048 - 14,473,858 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0812,419,524 - 12,457,404 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0813,871,065 - 13,909,249 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl813,871,213 - 13,909,188 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0813,810,841 - 13,848,730 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4812,119,277 - 12,148,950 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1812,117,148 - 12,148,935 (-)NCBI
Celera813,624,275 - 13,662,157 (-)NCBICelera
Cytogenetic Map8q12NCBI
CEP295
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381193,661,682 - 93,730,358 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1193,661,682 - 93,730,358 (+)EnsemblGRCh38hg38GRCh38
GRCh371193,394,848 - 93,463,524 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361193,394,816 - 93,463,522 (+)NCBINCBI36Build 36hg18NCBI36
Celera1190,686,257 - 90,754,974 (+)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1189,472,269 - 89,540,753 (+)NCBIHuRef
CHM1_11193,277,852 - 93,346,533 (+)NCBICHM1_1
T2T-CHM13v2.01193,578,052 - 93,648,871 (+)NCBIT2T-CHM13v2.0
Cep295
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39915,228,210 - 15,269,145 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl915,228,211 - 15,269,084 (-)EnsemblGRCm39 Ensembl
GRCm38915,316,914 - 15,357,849 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl915,316,915 - 15,357,788 (-)EnsemblGRCm38mm10GRCm38
MGSCv37915,121,358 - 15,162,232 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36915,067,308 - 15,083,892 (-)NCBIMGSCv36mm8
Celera912,595,903 - 12,636,777 (-)NCBICelera
Cytogenetic Map9A2NCBI
cM Map94.79NCBI
Cep295
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955414807,276 - 860,316 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955414806,238 - 860,273 (-)NCBIChiLan1.0ChiLan1.0
CEP295
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2994,520,645 - 94,590,117 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11195,614,553 - 95,684,035 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01188,683,180 - 88,751,995 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11192,170,720 - 92,239,237 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1192,175,806 - 92,239,772 (+)Ensemblpanpan1.1panPan2
CEP295
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1217,023,466 - 7,076,306 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl217,023,491 - 7,061,567 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha217,038,435 - 7,091,265 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0217,203,696 - 7,256,530 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl217,203,706 - 7,256,487 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1216,989,860 - 7,042,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0217,054,260 - 7,107,087 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0217,103,123 - 7,155,957 (-)NCBIUU_Cfam_GSD_1.0
Cep295
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494778,782,851 - 78,837,056 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366741,054,439 - 1,108,551 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366741,054,329 - 1,108,524 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CEP295
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl926,103,283 - 26,155,076 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1926,103,267 - 26,155,067 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2929,689,107 - 29,797,270 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CEP295
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1184,911,256 - 84,982,396 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl184,916,192 - 84,982,296 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604340,818,040 - 40,889,748 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cep295
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473538,358,694 - 38,397,865 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473538,349,473 - 38,398,022 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cep295
91 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:15
Interacting mature miRNAs:20
Transcripts:ENSRNOT00000029634
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat

Markers in Region
RH130169  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2812,183,233 - 12,183,420 (+)MAPPERmRatBN7.2
Rnor_6.0813,897,934 - 13,898,120NCBIRnor6.0
Rnor_5.0813,837,603 - 13,837,789UniSTSRnor5.0
RGSC_v3.4812,143,760 - 12,143,946UniSTSRGSC3.4
Celera813,650,937 - 13,651,123UniSTS
RH 3.4 Map822.3UniSTS
Cytogenetic Map8q12UniSTS
RH132383  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2812,156,863 - 12,157,070 (+)MAPPERmRatBN7.2
Rnor_6.0813,871,572 - 13,871,778NCBIRnor6.0
Rnor_5.0813,811,137 - 13,811,343UniSTSRnor5.0
RGSC_v3.4812,117,394 - 12,117,600UniSTSRGSC3.4
Celera813,624,571 - 13,624,777UniSTS
RH 3.4 Map8111.9UniSTS
Cytogenetic Map8q12UniSTS
RH138545  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2812,159,526 - 12,159,676 (+)MAPPERmRatBN7.2
Rnor_6.0813,874,235 - 13,874,384NCBIRnor6.0
Rnor_5.0813,813,806 - 13,813,955UniSTSRnor5.0
RGSC_v3.4812,120,057 - 12,120,206UniSTSRGSC3.4
Celera813,627,234 - 13,627,383UniSTS
RH 3.4 Map8111.1UniSTS
Cytogenetic Map8q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 14 25 16 18 16 58 21 39 5
Low 2 29 32 25 1 25 8 10 16 14 2 6 8
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001271048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265720 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC105648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF397648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM386844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB704880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO382359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF460314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000029634   ⟹   ENSRNOP00000029431
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl812,156,658 - 12,194,552 (-)Ensembl
Rnor_6.0 Ensembl813,871,412 - 13,906,355 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078372   ⟹   ENSRNOP00000072866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl812,156,568 - 12,194,552 (-)Ensembl
Rnor_6.0 Ensembl813,871,276 - 13,909,061 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000083011   ⟹   ENSRNOP00000074090
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl812,156,568 - 12,194,552 (-)Ensembl
Rnor_6.0 Ensembl813,871,213 - 13,909,188 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106883   ⟹   ENSRNOP00000078172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl812,156,554 - 12,194,552 (-)Ensembl
RefSeq Acc Id: NM_001271048   ⟹   NP_001257977
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,967 - 20,475,851 (-)NCBI
mRatBN7.2812,156,568 - 12,194,455 (-)NCBI
Rnor_6.0813,871,276 - 13,909,154 (-)NCBI
Rnor_5.0813,810,841 - 13,848,730 (-)NCBI
Celera813,624,275 - 13,662,157 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006242549   ⟹   XP_006242611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
mRatBN7.2812,156,570 - 12,194,542 (-)NCBI
Rnor_6.0813,871,366 - 13,909,249 (-)NCBI
Rnor_5.0813,810,841 - 13,848,730 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081696   ⟹   XP_038937624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
mRatBN7.2812,156,570 - 12,194,542 (-)NCBI
RefSeq Acc Id: XM_039081697   ⟹   XP_038937625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
mRatBN7.2812,156,570 - 12,194,542 (-)NCBI
RefSeq Acc Id: XM_039081702   ⟹   XP_038937630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
mRatBN7.2812,156,570 - 12,194,542 (-)NCBI
RefSeq Acc Id: XM_063265707   ⟹   XP_063121777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
RefSeq Acc Id: XM_063265708   ⟹   XP_063121778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
RefSeq Acc Id: XM_063265709   ⟹   XP_063121779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
RefSeq Acc Id: XM_063265710   ⟹   XP_063121780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
RefSeq Acc Id: XM_063265711   ⟹   XP_063121781
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
RefSeq Acc Id: XM_063265712   ⟹   XP_063121782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
RefSeq Acc Id: XM_063265713   ⟹   XP_063121783
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
RefSeq Acc Id: XM_063265714   ⟹   XP_063121784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
RefSeq Acc Id: XM_063265715   ⟹   XP_063121785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,471,582 (-)NCBI
RefSeq Acc Id: XM_063265716   ⟹   XP_063121786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,464,935 (-)NCBI
RefSeq Acc Id: XM_063265717   ⟹   XP_063121787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,469,333 (-)NCBI
RefSeq Acc Id: XM_063265718   ⟹   XP_063121788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,464,934 (-)NCBI
RefSeq Acc Id: XM_063265719   ⟹   XP_063121789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,469,362 (-)NCBI
RefSeq Acc Id: XM_063265720   ⟹   XP_063121790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
RefSeq Acc Id: XM_063265721   ⟹   XP_063121791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
RefSeq Acc Id: XM_063265722   ⟹   XP_063121792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,437,968 - 20,475,968 (-)NCBI
RefSeq Acc Id: XM_063265723   ⟹   XP_063121793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,454,261 - 20,475,968 (-)NCBI
RefSeq Acc Id: XR_010053990
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,454,090 - 20,475,968 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001257977 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242611 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937624 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937625 (Get FASTA)   NCBI Sequence Viewer  
  XP_038937630 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121777 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121778 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121779 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121780 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121781 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121782 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121783 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121784 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121785 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121786 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121787 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121788 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121789 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121790 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121791 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121792 (Get FASTA)   NCBI Sequence Viewer  
  XP_063121793 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A4L9P8 (Get FASTA)   NCBI Sequence Viewer  
  ABO47656 (Get FASTA)   NCBI Sequence Viewer  
  EDL78436 (Get FASTA)   NCBI Sequence Viewer  
  EDL78437 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000029431
  ENSRNOP00000029431.5
  ENSRNOP00000072866
  ENSRNOP00000072866.2
  ENSRNOP00000074090
  ENSRNOP00000074090.1
  ENSRNOP00000078172.1
RefSeq Acc Id: NP_001257977   ⟸   NM_001271048
- UniProtKB: A0A0G2K417 (UniProtKB/TrEMBL),   A0A8I5Y8G6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242611   ⟸   XM_006242549
- Peptide Label: isoform X3
- UniProtKB: A0A8L2QGZ6 (UniProtKB/TrEMBL),   A0A8I5Y8G6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000074090   ⟸   ENSRNOT00000083011
RefSeq Acc Id: ENSRNOP00000072866   ⟸   ENSRNOT00000078372
RefSeq Acc Id: ENSRNOP00000029431   ⟸   ENSRNOT00000029634
RefSeq Acc Id: XP_038937630   ⟸   XM_039081702
- Peptide Label: isoform X15
- UniProtKB: A4L9P8 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_038937624   ⟸   XM_039081696
- Peptide Label: isoform X4
- UniProtKB: A0A8I5Y8G6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937625   ⟸   XM_039081697
- Peptide Label: isoform X8
- UniProtKB: A0A0G2K773 (UniProtKB/TrEMBL),   A0A8I5Y8G6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000078172   ⟸   ENSRNOT00000106883
RefSeq Acc Id: XP_063121791   ⟸   XM_063265721
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063121780   ⟸   XM_063265710
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063121792   ⟸   XM_063265722
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063121790   ⟸   XM_063265720
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063121784   ⟸   XM_063265714
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063121782   ⟸   XM_063265712
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063121781   ⟸   XM_063265711
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063121778   ⟸   XM_063265708
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121783   ⟸   XM_063265713
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063121779   ⟸   XM_063265709
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063121777   ⟸   XM_063265707
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063121785   ⟸   XM_063265715
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063121789   ⟸   XM_063265719
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063121787   ⟸   XM_063265717
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063121786   ⟸   XM_063265716
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063121788   ⟸   XM_063265718
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063121793   ⟸   XM_063265723
- Peptide Label: isoform X18

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A4L9P8-F1-model_v2 AlphaFold A4L9P8 1-2395 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695754
Promoter ID:EPDNEW_R6277
Type:single initiation site
Name:Cep295_1
Description:centrosomal protein 295
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0813,909,143 - 13,909,203EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311723 AgrOrtholog
BioCyc Gene G2FUF-31647 BioCyc
Ensembl Genes ENSRNOG00000010999 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029634.6 UniProtKB/TrEMBL
  ENSRNOT00000078372 ENTREZGENE
  ENSRNOT00000078372.2 UniProtKB/TrEMBL
  ENSRNOT00000083011.2 UniProtKB/TrEMBL
  ENSRNOT00000106883.1 UniProtKB/TrEMBL
KEGG Report rno:363018 UniProtKB/TrEMBL
NCBI Gene 363018 ENTREZGENE
PANTHER ALMS1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21553:SF25 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cep295 PhenoGen
RatGTEx ENSRNOG00000010999 RatGTEx
UniProt A0A0G2K417 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K773 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y8G6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QGZ6 ENTREZGENE, UniProtKB/TrEMBL
  A4L9P8 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-10-22 Cep295  centrosomal protein 295  RGD1311723  similar to KIAA1731 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 RGD1311723  similar to KIAA1731 protein  LOC100365060  hypothetical protein LOC100365060  Data merged from RGD:2319810 1643240 APPROVED
2013-05-24 RGD1311723  similar to KIAA1731 protein  LOC100360419  hypothetical protein LOC100360419  Data merged from RGD:2322137 1643240 APPROVED
2010-05-06 LOC100360419  hypothetical protein LOC100360419      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-05 LOC100365060  hypothetical protein LOC100365060      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 RGD1311723  similar to KIAA1731 protein   RGD1311723_predicted  similar to KIAA1731 protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1311723_predicted  similar to KIAA1731 protein (predicted)  LOC363018_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC363018_predicted  similar to KIAA1731 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL