Foxp4 (forkhead box P4) - Rat Genome Database

Name: Foxp4
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Foxp4 (forkhead box P4) Rattus norvegicus

Analyze

Symbol:

Foxp4

Name:

forkhead box P4

RGD ID:

1311386

Description:

Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and identical protein binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including embryonic foregut morphogenesis; lung secretory cell differentiation; and negative regulation of lung goblet cell differentiation. Predicted to be active in nucleus. Orthologous to human FOXP4 (forkhead box P4); INTERACTS WITH (+)-schisandrin B; amphetamine; bis(2-ethylhexyl) phthalate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CCR4-NOT transcription complex subunit 3-like; forkhead box protein P4; LOC102555622; LOC363185; serine/arginine repetitive matrix protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FOXP4 (forkhead box P4)	RGD	RGD
Mus musculus (house mouse):	Foxp4 (forkhead box P4)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Foxp4 (forkhead box P4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FOXP4 (forkhead box P4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FOXP4 (forkhead box P4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Foxp4 (forkhead box P4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FOXP4 (forkhead box P4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FOXP4 (forkhead box P4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Foxp4 (forkhead box P4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PRKCG (protein kinase C gamma)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	FOXP4 (forkhead box P4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Foxp4 (forkhead box P4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	foxp4 (forkhead box P4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	fkh-7	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	FoxP	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	foxp4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	13,058,506 - 13,115,406 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	13,058,476 - 13,114,879 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	21,638,582 - 21,695,396 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	26,704,540 - 26,761,177 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	25,001,988 - 25,058,795 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	15,068,378 - 15,124,962 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	15,068,399 - 15,125,318 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	13,993,012 - 14,049,324 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	8,509,028 - 8,579,597 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	8,508,860 - 8,579,597 (+)	NCBI
Celera	9	10,812,577 - 10,868,280 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congestive heart failure (ISO)

Developmental Disabilities (ISO)

genetic disease (ISO)

infantile Refsum disease (ISO)

lung adenocarcinoma (ISO)

Prostatic Neoplasms (ISO)

sensorineural hearing loss (ISO)

Zellweger syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

afimoxifene (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

caffeine (ISO)

choline (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclophosphamide (EXP)

dibutyl phthalate (EXP)

dicrotophos (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenthion (ISO)

folic acid (ISO)

gentamycin (EXP)

inulin (ISO)

L-methionine (ISO)

Licochalcone B (ISO)

lipopolysaccharide (ISO)

methidathion (ISO)

methoxychlor (EXP)

monosodium L-glutamate (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

tetrachloromethane (EXP)

troglitazone (ISO)

tungsten (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

embryonic foregut morphogenesis (ISO)

heart development (ISO)

lung secretory cell differentiation (ISO)

negative regulation of lung goblet cell differentiation (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

regulation of lung goblet cell differentiation (ISO)

regulation of transcription by RNA polymerase II (IBA)

Cellular Component

nucleus (IBA)

Molecular Function

DNA binding (ISO)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IBA,ISO)

identical protein binding (ISO)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Transcriptional genomics associates FOX transcription factors with human heart failure.	Hannenhalli S, etal., Circulation. 2006 Sep 19;114(12):1269-76. Epub 2006 Sep 4.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14701752	PMID:15361625	PMID:18561326	PMID:22675208

Genomics

Comparative Map Data

Foxp4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	9	13,058,506 - 13,115,406 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	13,058,476 - 13,114,879 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	21,638,582 - 21,695,396 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	26,704,540 - 26,761,177 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	25,001,988 - 25,058,795 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	15,068,378 - 15,124,962 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	15,068,399 - 15,125,318 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	13,993,012 - 14,049,324 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	8,509,028 - 8,579,597 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	8,508,860 - 8,579,597 (+)	NCBI
Celera	9	10,812,577 - 10,868,280 (+)	NCBI		Celera
Cytogenetic Map	9	q12	NCBI

FOXP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	41,546,381 - 41,602,384 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	41,546,381 - 41,602,384 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	41,514,119 - 41,570,122 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	41,622,142 - 41,678,100 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	41,622,141 - 41,678,099	NCBI
Celera	6	43,067,608 - 43,123,566 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	41,232,474 - 41,288,223 (+)	NCBI		HuRef
CHM1_1	6	41,517,252 - 41,573,197 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	41,375,416 - 41,431,427 (+)	NCBI		T2T-CHM13v2.0

Foxp4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	48,178,058 - 48,235,401 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	48,178,058 - 48,235,570 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	47,867,133 - 47,924,632 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	47,867,133 - 47,924,645 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	48,004,082 - 48,061,581 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	47,330,324 - 47,387,634 (-)	NCBI		MGSCv36	mm8
Celera	17	51,308,820 - 51,367,567 (-)	NCBI		Celera
Cytogenetic Map	17	C	NCBI
cM Map	17	23.99	NCBI

Foxp4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	8,014,939 - 8,057,033 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	8,029,346 - 8,056,243 (+)	NCBI	ChiLan1.0	ChiLan1.0

FOXP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	6	51,911,928 - 51,967,539 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	41,133,751 - 41,189,709 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	42,455,809 - 42,496,205 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	42,459,420 - 42,496,205 (+)	Ensembl	panpan1.1		panPan2

FOXP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	10,239,402 - 10,292,892 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	10,258,166 - 10,291,125 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	10,269,034 - 10,322,552 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	10,719,170 - 10,772,709 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	10,737,920 - 10,772,703 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	10,250,401 - 10,304,021 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	10,352,401 - 10,387,661 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	10,427,587 - 10,481,623 (+)	NCBI		UU_Cfam_GSD_1.0

Foxp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	45,614,056 - 45,646,094 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	18,313,951 - 18,346,199 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936476	18,314,108 - 18,346,149 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FOXP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	36,754,754 - 36,793,527 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	36,760,643 - 36,793,620 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	42,037,738 - 42,088,634 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FOXP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	30,554,702 - 30,608,845 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	30,554,055 - 30,589,849 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	41,545,624 - 41,599,782 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Foxp4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	17,404,125 - 17,428,736 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	17,402,788 - 17,445,469 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Foxp4
245 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	563
Count of miRNA genes:	212
Interacting mature miRNAs:	259
Transcripts:	ENSRNOT00000064229
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10054141	Gmadr4	Adrenal mass QTL 4	2.45	0.0074	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	9	1	14209783	Rat
70226	Eae4	Experimental allergic encephalomyelitis QTL 4			nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	9	1	25661317	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	1	37999212	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	1	37999212	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	1	37999212	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	40594091	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	1	43718459	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	1	43718459	Rat
10054125	Srcrt7	Stress Responsive Cort QTL 7	3.33	0.0011	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	9	1	87073594	Rat
1331757	Cdexp1	CD45RC expression in CD8 T cells QTL 1	4.3		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	9	1024537	67509080	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	1254084	46254084	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	1254084	46254084	Rat
1578675	Bss17	Bone structure and strength QTL 17	3.8		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	9	3368652	13533896	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5109826	42921101	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5109826	50109826	Rat
11353947	Bp392	Blood pressure QTL 392			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	7283252	52283252	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	7954720	22071169	Rat
9589133	Insul26	Insulin level QTL 26	17.96	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	9	8952560	53952560	Rat
7411609	Foco16	Food consumption QTL 16	25.6	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	8952560	53952560	Rat

Markers in Region

BE121233

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	13,101,306 - 13,101,473 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	15,110,867 - 15,111,033	NCBI	Rnor6.0
Rnor_5.0	9	14,035,229 - 14,035,395	UniSTS	Rnor5.0
RGSC_v3.4	9	8,565,502 - 8,565,668	UniSTS	RGSC3.4
Celera	9	10,853,881 - 10,854,047	UniSTS
RH 3.4 Map	9	28.5	UniSTS
Cytogenetic Map	9	q12	UniSTS

RH130703

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	13,115,057 - 13,115,252 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	15,124,614 - 15,124,808	NCBI	Rnor6.0
Rnor_5.0	9	14,048,976 - 14,049,170	UniSTS	Rnor5.0
RGSC_v3.4	9	8,579,249 - 8,579,443	UniSTS	RGSC3.4
Celera	9	10,867,932 - 10,868,126	UniSTS
RH 3.4 Map	9	37.2	UniSTS
Cytogenetic Map	9	q12	UniSTS

REN59994

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	13,074,812 - 13,075,066 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	16,283,735 - 16,283,988	NCBI	Rnor6.0
Rnor_6.0	9	15,084,341 - 15,084,594	NCBI	Rnor6.0
Rnor_5.0	9	14,008,954 - 14,009,207	UniSTS	Rnor5.0
Rnor_5.0	9	15,200,360 - 15,200,613	UniSTS	Rnor5.0
RGSC_v3.4	9	8,525,906 - 8,526,159	UniSTS	RGSC3.4
Celera	9	10,828,506 - 10,828,759	UniSTS
Cytogenetic Map	9	q12	UniSTS

stSG634860

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	9	13,103,552 - 13,104,536 (+)	MAPPER	mRatBN7.2
Rnor_6.0	9	15,113,110 - 15,114,093	NCBI	Rnor6.0
Rnor_5.0	9	14,037,472 - 14,038,455	UniSTS	Rnor5.0
RGSC_v3.4	9	8,567,745 - 8,568,728	UniSTS	RGSC3.4
Celera	9	10,856,128 - 10,857,263	UniSTS
Cytogenetic Map	9	q12	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	14	17	11	9	11			66	23	34	3
Low		29	40	30	10	30	5	8	8	12	7	8	5
Below cutoff							3	3					3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001389210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083810	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083811	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083812	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000064229 ⟹ ENSRNOP00000060921

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	15,068,399 - 15,124,962 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087107 ⟹ ENSRNOP00000070287

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	9	13,058,476 - 13,114,879 (+)	Ensembl
Rnor_6.0 Ensembl	9	15,068,405 - 15,125,318 (+)	Ensembl

RefSeq Acc Id:

NM_001389210 ⟹ NP_001376139

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	13,058,700 - 13,115,406 (+)	NCBI

RefSeq Acc Id:

XM_008766868 ⟹ XP_008765090

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	13,058,506 - 13,113,879 (+)	NCBI
Rnor_6.0	9	15,068,378 - 15,124,962 (+)	NCBI

Sequence:

show sequence

CGGGGACGCCGGGGTCCCGGAGCCCCGGAGCCGGAGCGAGCTCAGGAGCGTCGCCGGAGCCCGG
GGAAGGGCGATCGGAAGCCGGAGAGAGCTAAGCCATCCTACAAAGTGCGATGCCCCCAAGGGGC
TGAGGCGCGCGGCGATCGGCGCTAGAAAGATCGCTTCGGAGCGGCGCGGCGCGCAGGGGCAGCC
CCGGCGAGTGGCGGCGGGCCCGGGCTGCGACCCGAGCGAGCCCCATGCCCCGTGCTGGCTGACG
GGCCGGAGCCCGCACTGAGCGGCCGGGCCGGACAGGTCCCGATAGAGCGGCAATGATGGTGGAG
TCTGCATCGGAGACAATCAGGTCGGCTCCGTCTGGTCAGAACGGCGTGGGCAGCCTCTCTGCGC
AGGCTGATGGCGGCGGTGGGGCCGGGACCGCAGGCACGGCCCCGGCTGCGGGCAGGGACGCCTC
AGGCAGGGAAGCGGCCAGCGGAGCTGACAGCAACGGCGAGATGAGCCCCGCGGAGCTTCTGCAC
TTCCAACAGCAACAGGCTCTCCAGGTGGCCCGGCAGTTCCTGTTGCAGCAAGCCTCCAGCCTGA
ACTCCCCGGGGAACAATGACAGTAAACAGTCGGCCTCTGCAGTGCAGGTGCCTGTGTCTGTGGC
CATGATGTCCCAGCAGATGCTTACCCCCCAGCAGATGCAGCAGATCCTGTCGCCACCTCAGCTG
CAGGCCTTGCTGCAGCAGCAACAGGCTCTCATGCTCCAACAGCTGCAGGAATATTACAAGAAGC
AGCAGGAACAGCTCCACTTGCAGCTCCTCAGCCAGCAGCAGGCTGGGAAACAGCAGCCCAAAGA
GGCTCTGGGGAACAAACAGCTGGCCTTCCAGCAGCAGCTCCTGCAGATGCAACAGTTGCAGCAA
CAGCACTTGCTCAACCTACAGAGGCAGGGGCTGGTCAGCCTGCAGCCTAGCCAAGCCTCAGGGC
CCCTCCAGGCCCTCCCGCAAGCAGCCGTGTGCCCGACAGACCTGCCCCAGCTGTGGAAAGGCGA
GGGTGCCCCGGGGCAGCCTGCTGAGGATGGCGGCAGGCAGGAGGGGCTGGACCTCGCCAGCCCA
GCTGCTACTGCTACCTCGTTCGCCAGCCCTCCCAAGGTCTCCCCGCCCCTCTCCCACCACCCCT
TACCCAACGGACAACCCACTGTGCTCACATCTCGGAGAGACAGCTCCTCCCATGAGGAGACCCC
CAGTTCCCACCCTCTTTATGGACATGGAGAATGCAAGTGGCCCGGCTGTGAGACCCTGTGTGAA
GACCTGGGCCAGTTTATCAAACACCTCAACACAGAGCATGCTTTGGATGACCGGAGCACGGCCC
AGTGCCGCGTGCAGATGCAGGTGGTCCAACAGCTGGAGATCCAGCTGGCCAAGGAGAGTGAGAG
GCTGCAGGCCATGATGGCACATCTGCATATGCGACCTTCCGAGCCCAAGCCCTTCAGCCAGCCA
CTGAACCCAGTCCCTGGCTCCTCCTCATTCTCCAAGGTGACCGTCTCCGCAGACCCATTCCCAG
ATGGCCTCGTGCACCCCCCAACTTCAGCCGCTGCCCCTGTCACACCCCTGCGTCCCCCTGGCCT
GGGCTCTGCCTCTTTGCACGGTGGGGGCCCTGCCCGCAGGAGAAGCAACGACAAATTCTGCTCC
CCCATCTCCTCAGAGCTGGCCCAGAATCATGAGTTCTACAAGAACGCAGACGTCAGGCCCCCCT
TCACCTATGCCTCCCTTATCCGCCAGGCCATTTTGGAGACTCCAGATAGGCAGCTGACCCTAAA
TGAGATATATAACTGGTTCACCAGGATGTTCGCCTATTTTCGAAGAAACACGGCCACCTGGAAG
AATGCCGTGCGCCACAACCTCAGCCTGCACAAGTGTTTCGTCCGCGTGGAGAATGTCAAGGGGG
CCGTGTGGACTGTGGATGAGCGGGAATATCAGAAACGGAGACCGCCAAAGATGACAGGGAGCCC
CACTCTGGTGAAGAACATGATCTCCGGCCTCAGTTATGGGGCACTTAACGCCAGCTACCAGGCT
GCCCTGGCAGAGAGCAGCTTCCCTCTCCTCAGCAGCCCCGGCATGCTGAACCCTGGCTCAGCCA
GCAGCCTTCTGCCCCTCAGCCAGGATGACATGGGCGCCCCTGGGGAACCACTACCCAGCAATGG
GAGCAGCAGCCCCCCTCGCCTCTCCCCTCCTCAGTACAGTCACCAGATACAAGTCAAAGAGGAG
CCTGCTGAGGCAGAGGAAGACCGACGGCCGGGACCTCCCCTGGGCGCCCCCAACCCCAGCACTG
TGGGGCCTCCAGAAGACAGGGACCTGGAGGAGGACCTGGCAGGAGAGGACATGTCCTAAGGGCT
GGGTGGGCAGGCAGGGCAGAACAAGACCCTGCCGCCCAGTCTGGACCCCGGCCCACCCACCCCA
CTTTACAGCCCCTCCAACCTCAAGGCACTTCGGGGACTTGGACAGGGGAGACCTGGGCCCCACG
CCACCTGACTGACAGACGCCTGGGGGCAGGCACATCCCTGCCTCCCCAAGAGAACACAGAATCC
TTGGACTGGGACCTATAGAGGACATGGAGGGCCCAGACCCTCTCAGCCCCTCCCTGTATTCCCA
ACCACCACCAGCAGCAGCAGGGCTCTCCCTCCCCACCAGCGCTCCCCTCCAGGGCCCCTTAGCA
CAGGGGAGACCCGCAGGCGGGGCTGAGCCACCCCCACAAACCCTACCTTCATCCCCTCTGCCCT
GTCAGTGGCAGAGGTTTCTGGCCAGAGGACCCTTCCTGGTTCATCTTCCCTCACCTTCTTTTCC
CAACTGTGAAAATTAGTTCTCCAGCCCCAGCTTCCCGTTCGATGGGGCGAGCAGGCTGGGGGTA
CACCTGCAGGCCAGCCCCTCAGCTGCTGGGGTGGAGCAAGTTGTGCCCTGCCCTCCCCTACCCC
ACCCCCGACCTGAGACAGGATCCAGACTAAGCAGGCCTCCACCCCACCCTGTTTGCTGGGTACT
CCTGCGGCACCCCGACTTGAGGAAGCACTGAGGGACCCCCATGCTGGGCACCTTCAGAGCTGTG
TGCATAGGTGGCCTCTGCCCAGAGCATCACAGCACGAAGTAAGCCAGGCTGGAACTACCCTCAC
CCCAGCCTAGGGGTCCCCTGAATTGGGGTCCTCTCACCCCCCTCAGCACCCCTTCCTGTCCCCC
CTCCCCTCCCCTCCTCCCAGTTAAACGGATGACCAAAGACCTTTCTTATGCCGGAAGCAAAAAC
CAAAACTTTTTGTTGGCTTTTTCTTTTGCCGCCTCCCCGAGCATCCTGCCCTCCCAACCCTGCC
TCCTGGCCCCAGGCTGGAAGCCCCTCCTTCACTTAAGTTATTGTTTTAAACCAAAGTTTACAGT
GTCTGTTGGTGGCAAGACCCCCTTTCTTCCCTCCCCCCAAGGGTCCAGGGGTCCTATTCACTTC
CCCCTCTGCTCTTACCTTGCCTACGGAGATAGGAGAGGGCAGAACCCTGCCCCAACCCTGGGCT
GCTTTCTGAGGGGGCTCCTCAGATGCCTCCATAGGACCAAGTCCCCATCATGCCGGGAGTGTGG
ATTCTAGCAGAAGAGCTAGAAACGATGAGATTCCACAGACCCCCTATGGGGGACCCACAACCCA
AGGCCACGCACGGACTGGGTGTAAGGGATGCCTAGAACACCCTGACCAGGCCCCTTCCCTTAGA
AAGACTTCTTGGGTATTTCCCAGGAGAACCCCACATTCACCACCAACCCTCTATCCCTACCCTA
CACACAAGCTGCCCTCCTGAGAGGCAAGGGGCACCCCCCGGCCTTCCCCTATGTATCCCCACCT
GTGTTCCGTTTGACCCAGCACAGAAATATTAAAATCCTCTATTTACCGGG

hide sequence

RefSeq Acc Id:

XM_008766870 ⟹ XP_008765092

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	13,058,506 - 13,113,879 (+)	NCBI
Rnor_6.0	9	15,068,380 - 15,124,962 (+)	NCBI

Sequence:

show sequence

GGGACGCCGGGGTCCCGGAGCCCCGGAGCCGGAGCGAGCTCAGGAGCGTCGCCGGAGCCCGGGG
AAGGGCGATCGGAAGCCGGAGAGAGCTAAGCCATCCTACAAAGTGCGATGCCCCCAAGGGGCTG
AGGCGCGCGGCGATCGGCGCTAGAAAGATCGCTTCGGAGCGGCGCGGCGCGCAGGGGCAGCCCC
GGCGAGTGGCGGCGGGCCCGGGCTGCGACCCGAGCGAGCCCCATGCCCCGTGCTGGCTGACGGG
CCGGAGCCCGCACTGAGCGGCCGGGCCGGACAGGTCCCGATAGAGCGGCAATGATGGTGGAGTC
TGCATCGGAGACAATCAGGTCGGCTCCGTCTGGTCAGAACGGCGTGGGCAGCCTCTCTGCGCAG
GCTGATGGCGGCGGTGGGGCCGGGACCGCAGGCACGGCCCCGGCTGCGGGCAGGGACGCCTCAG
GCAGGGAAGCGGCCAGCGGAGCTGACAGCAACGGCGAGATGAGCCCCGCGGAGCTTCTGCACTT
CCAACAGCAACAGGCTCTCCAGGTGGCCCGGCAGTTCCTGTTGCAGCAAGCCTCCAGCCTGAAC
TCCCCGGGGAACAATGACAGTAAACAGTCGGCCTCTGCAGTGCAGGTGCCTGTGTCTGTGGCCA
TGATGTCCCAGCAGATGCTTACCCCCCAGCAGATGCAGCAGATCCTGTCGCCACCTCAGCTGCA
GGCCTTGCTGCAGCAGCAACAGGCTCTCATGCTCCAACAGCTGCAGGAATATTACAAGAAGCAG
CAGGAACAGCTCCACTTGCAGCTCCTCAGCCAGCAGCAGGCTGGGAAACAGCAGCCCAAAGAGG
CTCTGGGGAACAAACAGCTGGCCTTCCAGCAGCAGCTCCTGCAGATGCAACAGTTGCAGCAACA
GCACTTGCTCAACCTACAGAGGCAGGGGCTGGTCAGCCTGCAGCCTAGCCAAGCCTCAGGGCCC
CTCCAGGCCCTCCCGCAAGCCGTGTGCCCGACAGACCTGCCCCAGCTGTGGAAAGGCGAGGGTG
CCCCGGGGCAGCCTGCTGAGGATGGCGGCAGGCAGGAGGGGCTGGACCTCGCCAGCCCAGCTGC
TACTGCTACCTCGTTCGCCAGCCCTCCCAAGGTCTCCCCGCCCCTCTCCCACCACCCCTTACCC
AACGGACAACCCACTGTGCTCACATCTCGGAGAGACAGCTCCTCCCATGAGGAGACCCCCAGTT
CCCACCCTCTTTATGGACATGGAGAATGCAAGTGGCCCGGCTGTGAGACCCTGTGTGAAGACCT
GGGCCAGTTTATCAAACACCTCAACACAGAGCATGCTTTGGATGACCGGAGCACGGCCCAGTGC
CGCGTGCAGATGCAGGTGGTCCAACAGCTGGAGATCCAGCTGGCCAAGGAGAGTGAGAGGCTGC
AGGCCATGATGGCACATCTGCATATGCGACCTTCCGAGCCCAAGCCCTTCAGCCAGCCAGTGAC
CGTCTCCGCAGACCCATTCCCAGATGGCCTCGTGCACCCCCCAACTTCAGCCGCTGCCCCTGTC
ACACCCCTGCGTCCCCCTGGCCTGGGCTCTGCCTCTTTGCACGGTGGGGGCCCTGCCCGCAGGA
GAAGCAACGACAAATTCTGCTCCCCCATCTCCTCAGAGCTGGCCCAGAATCATGAGTTCTACAA
GAACGCAGACGTCAGGCCCCCCTTCACCTATGCCTCCCTTATCCGCCAGGCCATTTTGGAGACT
CCAGATAGGCAGCTGACCCTAAATGAGATATATAACTGGTTCACCAGGATGTTCGCCTATTTTC
GAAGAAACACGGCCACCTGGAAGAATGCCGTGCGCCACAACCTCAGCCTGCACAAGTGTTTCGT
CCGCGTGGAGAATGTCAAGGGGGCCGTGTGGACTGTGGATGAGCGGGAATATCAGAAACGGAGA
CCGCCAAAGATGACAGGGAGCCCCACTCTGGTGAAGAACATGATCTCCGGCCTCAGTTATGGGG
CACTTAACGCCAGCTACCAGGCTGCCCTGGCAGAGAGCAGCTTCCCTCTCCTCAGCAGCCCCGG
CATGCTGAACCCTGGCTCAGCCAGCAGCCTTCTGCCCCTCAGCCAGGATGACATGGGCGCCCCT
GGGGAACCACTACCCAGCAATGGGAGCAGCAGCCCCCCTCGCCTCTCCCCTCCTCAGTACAGTC
ACCAGATACAAGTCAAAGAGGAGCCTGCTGAGGCAGAGGAAGACCGACGGCCGGGACCTCCCCT
GGGCGCCCCCAACCCCAGCACTGTGGGGCCTCCAGAAGACAGGGACCTGGAGGAGGACCTGGCA
GGAGAGGACATGTCCTAAGGGCTGGGTGGGCAGGCAGGGCAGAACAAGACCCTGCCGCCCAGTC
TGGACCCCGGCCCACCCACCCCACTTTACAGCCCCTCCAACCTCAAGGCACTTCGGGGACTTGG
ACAGGGGAGACCTGGGCCCCACGCCACCTGACTGACAGACGCCTGGGGGCAGGCACATCCCTGC
CTCCCCAAGAGAACACAGAATCCTTGGACTGGGACCTATAGAGGACATGGAGGGCCCAGACCCT
CTCAGCCCCTCCCTGTATTCCCAACCACCACCAGCAGCAGCAGGGCTCTCCCTCCCCACCAGCG
CTCCCCTCCAGGGCCCCTTAGCACAGGGGAGACCCGCAGGCGGGGCTGAGCCACCCCCACAAAC
CCTACCTTCATCCCCTCTGCCCTGTCAGTGGCAGAGGTTTCTGGCCAGAGGACCCTTCCTGGTT
CATCTTCCCTCACCTTCTTTTCCCAACTGTGAAAATTAGTTCTCCAGCCCCAGCTTCCCGTTCG
ATGGGGCGAGCAGGCTGGGGGTACACCTGCAGGCCAGCCCCTCAGCTGCTGGGGTGGAGCAAGT
TGTGCCCTGCCCTCCCCTACCCCACCCCCGACCTGAGACAGGATCCAGACTAAGCAGGCCTCCA
CCCCACCCTGTTTGCTGGGTACTCCTGCGGCACCCCGACTTGAGGAAGCACTGAGGGACCCCCA
TGCTGGGCACCTTCAGAGCTGTGTGCATAGGTGGCCTCTGCCCAGAGCATCACAGCACGAAGTA
AGCCAGGCTGGAACTACCCTCACCCCAGCCTAGGGGTCCCCTGAATTGGGGTCCTCTCACCCCC
CTCAGCACCCCTTCCTGTCCCCCCTCCCCTCCCCTCCTCCCAGTTAAACGGATGACCAAAGACC
TTTCTTATGCCGGAAGCAAAAACCAAAACTTTTTGTTGGCTTTTTCTTTTGCCGCCTCCCCGAG
CATCCTGCCCTCCCAACCCTGCCTCCTGGCCCCAGGCTGGAAGCCCCTCCTTCACTTAAGTTAT
TGTTTTAAACCAAAGTTTACAGTGTCTGTTGGTGGCAAGACCCCCTTTCTTCCCTCCCCCCAAG
GGTCCAGGGGTCCTATTCACTTCCCCCTCTGCTCTTACCTTGCCTACGGAGATAGGAGAGGGCA
GAACCCTGCCCCAACCCTGGGCTGCTTTCTGAGGGGGCTCCTCAGATGCCTCCATAGGACCAAG
TCCCCATCATGCCGGGAGTGTGGATTCTAGCAGAAGAGCTAGAAACGATGAGATTCCACAGACC
CCCTATGGGGGACCCACAACCCAAGGCCACGCACGGACTGGGTGTAAGGGATGCCTAGAACACC
CTGACCAGGCCCCTTCCCTTAGAAAGACTTCTTGGGTATTTCCCAGGAGAACCCCACATTCACC
ACCAACCCTCTATCCCTACCCTACACACAAGCTGCCCTCCTGAGAGGCAAGGGGCACCCCCCGG
CCTTCCCCTATGTATCCCCACCTGTGTTCCGTTTGACCCAGCACAGAAATATTAAAATCCTCTA
TTTACCGGG

hide sequence

RefSeq Acc Id:

XM_008766871 ⟹ XP_008765093

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	13,058,506 - 13,113,953 (+)	NCBI
Rnor_6.0	9	15,068,378 - 15,124,962 (+)	NCBI

Sequence:

show sequence

CGGGGACGCCGGGGTCCCGGAGCCCCGGAGCCGGAGCGAGCTCAGGAGCGTCGCCGGAGCCCGG
GGAAGGGCGATCGGAAGCCGGAGAGAGCTAAGCCATCCTACAAAGTGCGATGCCCCCAAGGGGC
TGAGGCGCGCGGCGATCGGCGCTAGAAAGATCGCTTCGGAGCGGCGCGGCGCGCAGGGGCAGCC
CCGGCGAGTGGCGGCGGGCCCGGGCTGCGACCCGAGCGAGCCCCATGCCCCGTGCTGGCTGACG
GGCCGGAGCCCGCACTGAGCGGCCGGGCCGGACAGGTCCCGATAGAGCGGCAATGATGGTGGAG
TCTGCATCGGAGACAATCAGGTCGGCTCCGTCTGGTCAGAACGGCGTGGGCAGCCTCTCTGCGC
AGGCTGATGGCGGCGGTGGGGCCGGGACCGCAGGCACGGCCCCGGCTGCGGGCAGGGACGCCTC
AGGCAGGGAAGCGGCCAGCGGAGCTGACAGCAACGGCGAGATGAGCCCCGCGGAGCTTCTGCAC
TTCCAACAGCAACAGGCTCTCCAGGTGGCCCGGCAGTTCCTGTTGCAGCAAGCCTCCAGCCTGA
ACTCCCCGGGGAACAATGACAGTAAACAGTCGGCCTCTGCAGTGCAGGTGCCTGTGTCTGTGGC
CATGATGTCCCAGCAGATGCTTACCCCCCAGCAGATGCAGCAGATCCTGTCGCCACCTCAGCTG
CAGGCCTTGCTGCAGCAGCAACAGGCTCTCATGCTCCAACAGCTGCAGGAATATTACAAGAAGC
AGCAGGAACAGCTCCACTTGCAGCTCCTCAGCCAGCAGCAGGCTGGGAAACAGCAGCCCAAAGA
GGCTCTGGGGAACAAACAGCTGGCCTTCCAGCAGCAGCTCCTGCAGATGCAACAGTTGCAGCAA
CAGCACTTGCTCAACCTACAGAGGCAGGGGCTGGTCAGCCTGCAGCCTAGCCAAGCCTCAGGGC
CCCTCCAGGCCCTCCCGCAAGCCGTGTGCCCGACAGACCTGCCCCAGCTGTGGAAAGGCGAGGG
TGCCCCGGGGCAGCCTGCTGAGGATGGCGGCAGGCAGGAGGGGCTGGACCTCGCCAGCCCAGCT
GCTACTGCTACCTCGTTCGCCAGCCCTCCCAAGGTCTCCCCGCCCCTCTCCCACCACCCCTTAC
CCAACGGACAACCCACTGTGCTCACATCTCGGAGAGACAGCTCCTCCCATGAGGAGACCCCCAG
TTCCCACCCTCTTTATGGACATGGAGAATGCAAGTGGCCCGGCTGTGAGACCCTGTGTGAAGAC
CTGGGCCAGTTTATCAAACACCTCAACACAGAGCATGCTTTGGATGACCGGAGCACGGCCCAGT
GCCGCGTGCAGATGCAGGTGGTCCAACAGCTGGAGATCCAGCTGGCCAAGGAGAGTGAGAGGCT
GCAGGCCATGATGGCACATCTGCATATGCGACCTTCCGAGCCCAAGCCCTTCAGCCAGCCACTG
AACCCAGTCCCTGGCTCCTCCTCATTCTCCAAGGTGACCGTCTCCGCAGACCCATTCCCAGATG
GCCTCGTGCACCCCCCAACTTCAGCCGCTGCCCCTGTCACACCCCTGCGTCCCCCTGGCCTGGG
CTCTGCCTCTTTGCACGGTGGGGGCCCTGCCCGCAGGAGAAGCAACGACAAATTCTGCTCCCCC
ATCTCCTCAGAGCTGGCCCAGAATCATGAGTTCTACAAGAACGCAGACGTCAGGCCCCCCTTCA
CCTATGCCTCCCTTATCCGCCAGGCCATTTTGGAGACTCCAGATAGGCAGCTGACCCTAAATGA
GATATATAACTGGTTCACCAGGATGTTCGCCTATTTTCGAAGAAACACGGCCACCTGGAAGAAT
GCCGTGCGCCACAACCTCAGCCTGCACAAGTGTTTCGTCCGCGTGGAGAATGTCAAGGGGGCCG
TGTGGACTGTGGATGAGCGGGAATATCAGAAACGGAGACCGCCAAAGATGACAGGGAGCCCCAC
TCTGGTGAAGAACATGATCTCCGGCCTCAGTTATGGGGCACTTAACGCCAGCTACCAGGCTGCC
CTGGCAGAGAGCAGCTTCCCTCTCCTCAGCAGCCCCGGCATGCTGAACCCTGGCTCAGCCAGCA
GCCTTCTGCCCCTCAGCCAGGATGACATGGGCGCCCCTGGGGAACCACTACCCAGCAATGGGAG
CAGCAGCCCCCCTCGCCTCTCCCCTCCTCAGTACAGTCACCAGATACAAGTCAAAGAGGAGCCT
GCTGAGGCAGAGGAAGACCGACGGCCGGGACCTCCCCTGGGCGCCCCCAACCCCAGCACTGTGG
GGCCTCCAGAAGACAGGGACCTGGAGGAGGACCTGGCAGGAGAGGACATGTCCTAAGGGCTGGG
TGGGCAGGCAGGGCAGAACAAGACCCTGCCGCCCAGTCTGGACCCCGGCCCACCCACCCCACTT
TACAGCCCCTCCAACCTCAAGGCACTTCGGGGACTTGGACAGGGGAGACCTGGGCCCCACGCCA
CCTGACTGACAGACGCCTGGGGGCAGGCACATCCCTGCCTCCCCAAGAGAACACAGAATCCTTG
GACTGGGACCTATAGAGGACATGGAGGGCCCAGACCCTCTCAGCCCCTCCCTGTATTCCCAACC
ACCACCAGCAGCAGCAGGGCTCTCCCTCCCCACCAGCGCTCCCCTCCAGGGCCCCTTAGCACAG
GGGAGACCCGCAGGCGGGGCTGAGCCACCCCCACAAACCCTACCTTCATCCCCTCTGCCCTGTC
AGTGGCAGAGGTTTCTGGCCAGAGGACCCTTCCTGGTTCATCTTCCCTCACCTTCTTTTCCCAA
CTGTGAAAATTAGTTCTCCAGCCCCAGCTTCCCGTTCGATGGGGCGAGCAGGCTGGGGGTACAC
CTGCAGGCCAGCCCCTCAGCTGCTGGGGTGGAGCAAGTTGTGCCCTGCCCTCCCCTACCCCACC
CCCGACCTGAGACAGGATCCAGACTAAGCAGGCCTCCACCCCACCCTGTTTGCTGGGTACTCCT
GCGGCACCCCGACTTGAGGAAGCACTGAGGGACCCCCATGCTGGGCACCTTCAGAGCTGTGTGC
ATAGGTGGCCTCTGCCCAGAGCATCACAGCACGAAGTAAGCCAGGCTGGAACTACCCTCACCCC
AGCCTAGGGGTCCCCTGAATTGGGGTCCTCTCACCCCCCTCAGCACCCCTTCCTGTCCCCCCTC
CCCTCCCCTCCTCCCAGTTAAACGGATGACCAAAGACCTTTCTTATGCCGGAAGCAAAAACCAA
AACTTTTTGTTGGCTTTTTCTTTTGCCGCCTCCCCGAGCATCCTGCCCTCCCAACCCTGCCTCC
TGGCCCCAGGCTGGAAGCCCCTCCTTCACTTAAGTTATTGTTTTAAACCAAAGTTTACAGTGTC
TGTTGGTGGCAAGACCCCCTTTCTTCCCTCCCCCCAAGGGTCCAGGGGTCCTATTCACTTCCCC
CTCTGCTCTTACCTTGCCTACGGAGATAGGAGAGGGCAGAACCCTGCCCCAACCCTGGGCTGCT
TTCTGAGGGGGCTCCTCAGATGCCTCCATAGGACCAAGTCCCCATCATGCCGGGAGTGTGGATT
CTAGCAGAAGAGCTAGAAACGATGAGATTCCACAGACCCCCTATGGGGGACCCACAACCCAAGG
CCACGCACGGACTGGGTGTAAGGGATGCCTAGAACACCCTGACCAGGCCCCTTCCCTTAGAAAG
ACTTCTTGGGTATTTCCCAGGAGAACCCCACATTCACCACCAACCCTCTATCCCTACCCTACAC
ACAAGCTGCCCTCCTGAGAGGCAAGGGGCACCCCCCGGCCTTCCCCTATGTATCCCCACCTGTG
TTCCGTTTGACCCAGCACAGAAATATTAAAATCCTCTATTTACCGGG

hide sequence

RefSeq Acc Id:

XM_039083810 ⟹ XP_038939738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	13,058,506 - 13,113,953 (+)	NCBI

RefSeq Acc Id:

XM_039083811 ⟹ XP_038939739

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	13,058,506 - 13,113,953 (+)	NCBI

RefSeq Acc Id:

XM_039083812 ⟹ XP_038939740

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	9	13,094,522 - 13,113,953 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001376139	(Get FASTA)	NCBI Sequence Viewer
	XP_008765090	(Get FASTA)	NCBI Sequence Viewer
	XP_008765092	(Get FASTA)	NCBI Sequence Viewer
	XP_008765093	(Get FASTA)	NCBI Sequence Viewer
	XP_038939738	(Get FASTA)	NCBI Sequence Viewer
	XP_038939739	(Get FASTA)	NCBI Sequence Viewer
	XP_038939740	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM18908	(Get FASTA)	NCBI Sequence Viewer
	EDM18909	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_008765090 ⟸ XM_008766868
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2JXI7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMVESASETIRSAPSGQNGVGSLSAQADGGGGAGTAGTAPAAGRDASGREAASGADSNGEMSPA ELLHFQQQQALQVARQFLLQQASSLNSPGNNDSKQSASAVQVPVSVAMMSQQMLTPQQMQQILS PPQLQALLQQQQALMLQQLQEYYKKQQEQLHLQLLSQQQAGKQQPKEALGNKQLAFQQQLLQMQ QLQQQHLLNLQRQGLVSLQPSQASGPLQALPQAAVCPTDLPQLWKGEGAPGQPAEDGGRQEGLD LASPAATATSFASPPKVSPPLSHHPLPNGQPTVLTSRRDSSSHEETPSSHPLYGHGECKWPGCE TLCEDLGQFIKHLNTEHALDDRSTAQCRVQMQVVQQLEIQLAKESERLQAMMAHLHMRPSEPKP FSQPLNPVPGSSSFSKVTVSADPFPDGLVHPPTSAAAPVTPLRPPGLGSASLHGGGPARRRSND KFCSPISSELAQNHEFYKNADVRPPFTYASLIRQAILETPDRQLTLNEIYNWFTRMFAYFRRNT ATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREYQKRRPPKMTGSPTLVKNMISGLSYGALNA SYQAALAESSFPLLSSPGMLNPGSASSLLPLSQDDMGAPGEPLPSNGSSSPPRLSPPQYSHQIQ VKEEPAEAEEDRRPGPPLGAPNPSTVGPPEDRDLEEDLAGEDMS hide sequence

RefSeq Acc Id:

XP_008765093 ⟸ XM_008766871

- Peptide Label:

isoform X4

- Sequence:

show sequence

MMVESASETIRSAPSGQNGVGSLSAQADGGGGAGTAGTAPAAGRDASGREAASGADSNGEMSPA
ELLHFQQQQALQVARQFLLQQASSLNSPGNNDSKQSASAVQVPVSVAMMSQQMLTPQQMQQILS
PPQLQALLQQQQALMLQQLQEYYKKQQEQLHLQLLSQQQAGKQQPKEALGNKQLAFQQQLLQMQ
QLQQQHLLNLQRQGLVSLQPSQASGPLQALPQAVCPTDLPQLWKGEGAPGQPAEDGGRQEGLDL
ASPAATATSFASPPKVSPPLSHHPLPNGQPTVLTSRRDSSSHEETPSSHPLYGHGECKWPGCET
LCEDLGQFIKHLNTEHALDDRSTAQCRVQMQVVQQLEIQLAKESERLQAMMAHLHMRPSEPKPF
SQPLNPVPGSSSFSKVTVSADPFPDGLVHPPTSAAAPVTPLRPPGLGSASLHGGGPARRRSNDK
FCSPISSELAQNHEFYKNADVRPPFTYASLIRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTA
TWKNAVRHNLSLHKCFVRVENVKGAVWTVDEREYQKRRPPKMTGSPTLVKNMISGLSYGALNAS
YQAALAESSFPLLSSPGMLNPGSASSLLPLSQDDMGAPGEPLPSNGSSSPPRLSPPQYSHQIQV
KEEPAEAEEDRRPGPPLGAPNPSTVGPPEDRDLEEDLAGEDMS

hide sequence

RefSeq Acc Id:	XP_008765092 ⟸ XM_008766870
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2JXI7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MMVESASETIRSAPSGQNGVGSLSAQADGGGGAGTAGTAPAAGRDASGREAASGADSNGEMSPA ELLHFQQQQALQVARQFLLQQASSLNSPGNNDSKQSASAVQVPVSVAMMSQQMLTPQQMQQILS PPQLQALLQQQQALMLQQLQEYYKKQQEQLHLQLLSQQQAGKQQPKEALGNKQLAFQQQLLQMQ QLQQQHLLNLQRQGLVSLQPSQASGPLQALPQAVCPTDLPQLWKGEGAPGQPAEDGGRQEGLDL ASPAATATSFASPPKVSPPLSHHPLPNGQPTVLTSRRDSSSHEETPSSHPLYGHGECKWPGCET LCEDLGQFIKHLNTEHALDDRSTAQCRVQMQVVQQLEIQLAKESERLQAMMAHLHMRPSEPKPF SQPVTVSADPFPDGLVHPPTSAAAPVTPLRPPGLGSASLHGGGPARRRSNDKFCSPISSELAQN HEFYKNADVRPPFTYASLIRQAILETPDRQLTLNEIYNWFTRMFAYFRRNTATWKNAVRHNLSL HKCFVRVENVKGAVWTVDEREYQKRRPPKMTGSPTLVKNMISGLSYGALNASYQAALAESSFPL LSSPGMLNPGSASSLLPLSQDDMGAPGEPLPSNGSSSPPRLSPPQYSHQIQVKEEPAEAEEDRR PGPPLGAPNPSTVGPPEDRDLEEDLAGEDMS hide sequence

RefSeq Acc Id:

ENSRNOP00000070287 ⟸ ENSRNOT00000087107

RefSeq Acc Id:

ENSRNOP00000060921 ⟸ ENSRNOT00000064229

RefSeq Acc Id:	XP_038939738 ⟸ XM_039083810
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038939739 ⟸ XM_039083811
- Peptide Label:	isoform X2

RefSeq Acc Id:

NP_001376139 ⟸ NM_001389210

RefSeq Acc Id:	XP_038939740 ⟸ XM_039083812
- Peptide Label:	isoform X6

Protein Domains

Fork-head

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JXI7-F1-model_v2	AlphaFold	A0A0G2JXI7	1-671	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311386	AgrOrtholog
BioCyc Gene	G2FUF-28285	BioCyc
Ensembl Genes	ENSRNOG00000022804	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000070287	ENTREZGENE
	ENSRNOP00000070287.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000087107	ENTREZGENE
	ENSRNOT00000087107.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
	1.20.5.340	UniProtKB/TrEMBL
InterPro	FH_FOXP4	UniProtKB/TrEMBL
	FOXP-CC	UniProtKB/TrEMBL
	TF_fork_head	UniProtKB/TrEMBL
	TF_fork_head_CS_2	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
	WH_DNA-bd_sf	UniProtKB/TrEMBL
NCBI Gene	363185	ENTREZGENE
PANTHER	FORKHEAD BOX P, ISOFORM C	UniProtKB/TrEMBL
	FORKHEAD BOX PROTEIN P4	UniProtKB/TrEMBL
Pfam	Fork_head	UniProtKB/TrEMBL
	FOXP-CC	UniProtKB/TrEMBL
PhenoGen	Foxp4	PhenoGen
PRINTS	FORKHEAD	UniProtKB/TrEMBL
PROSITE	FORK_HEAD_2	UniProtKB/TrEMBL
	FORK_HEAD_3	UniProtKB/TrEMBL
SMART	SM00339	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46785	UniProtKB/TrEMBL
UniProt	A0A0G2JXI7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Foxp4	forkhead box P4	LOC102555622	CCR4-NOT transcription complex subunit 3-like	Data Merged	737654	PROVISIONAL
2013-12-18	LOC102555622	CCR4-NOT transcription complex subunit 3-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Foxp4	forkhead box P4	Foxp4_predicted	forkhead box P4 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Foxp4_predicted	forkhead box P4 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD