Ltv1 (LTV1 ribosome biogenesis factor) - Rat Genome Database

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Gene: Ltv1 (LTV1 ribosome biogenesis factor) Rattus norvegicus
Analyze
Symbol: Ltv1
Name: LTV1 ribosome biogenesis factor
RGD ID: 1311264
Description: Predicted to be involved in ribosomal small subunit biogenesis and ribosomal small subunit export from nucleus. Predicted to be located in nucleoplasm. Predicted to be part of preribosome, small subunit precursor. Predicted to be active in cytosol and nucleus. Orthologous to human LTV1 (LTV1 ribosome biogenesis factor); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH 17beta-estradiol; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC361452; LTV1 homolog; LTV1 homolog (S. cerevisiae); RGD1311264; similar to hypothetical protein FLJ14909
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.217,565,673 - 7,578,398 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl17,565,669 - 7,578,563 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx17,262,122 - 7,274,861 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0113,261,245 - 13,273,984 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.017,544,410 - 7,557,149 (-)NCBIRnor_WKY
Rnor_6.017,323,043 - 7,335,766 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl17,323,040 - 7,335,936 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.018,958,291 - 8,971,014 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.417,956,276 - 7,968,999 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.117,956,277 - 7,968,999 (-)NCBI
Celera16,054,558 - 6,067,290 (-)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Maturation of eukaryotic ribosomes: acquisition of functionality. Panse VG and Johnson AW, Trends Biochem Sci. 2010 May;35(5):260-6. doi: 10.1016/j.tibs.2010.01.001.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
6. CK1delta and CK1epsilon are components of human 40S subunit precursors required for cytoplasmic 40S maturation. Zemp I, etal., J Cell Sci. 2014 Mar 15;127(Pt 6):1242-53. doi: 10.1242/jcs.138719. Epub 2014 Jan 14.

Genomics

Comparative Map Data
Ltv1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.217,565,673 - 7,578,398 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl17,565,669 - 7,578,563 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx17,262,122 - 7,274,861 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0113,261,245 - 13,273,984 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.017,544,410 - 7,557,149 (-)NCBIRnor_WKY
Rnor_6.017,323,043 - 7,335,766 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl17,323,040 - 7,335,936 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.018,958,291 - 8,971,014 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.417,956,276 - 7,968,999 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.117,956,277 - 7,968,999 (-)NCBI
Celera16,054,558 - 6,067,290 (-)NCBICelera
Cytogenetic Map1p13NCBI
LTV1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386143,843,338 - 143,863,812 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6143,843,338 - 143,863,812 (+)EnsemblGRCh38hg38GRCh38
GRCh376144,164,475 - 144,184,949 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366144,206,201 - 144,226,636 (+)NCBINCBI36Build 36hg18NCBI36
Build 346144,206,200 - 144,226,634NCBI
Celera6144,904,917 - 144,925,352 (+)NCBICelera
Cytogenetic Map6q24.2NCBI
HuRef6141,728,279 - 141,748,714 (+)NCBIHuRef
CHM1_16144,427,386 - 144,447,836 (+)NCBICHM1_1
T2T-CHM13v2.06145,036,018 - 145,056,492 (+)NCBIT2T-CHM13v2.0
Ltv1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391013,054,341 - 13,068,881 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1013,053,884 - 13,068,912 (-)EnsemblGRCm39 Ensembl
GRCm381013,178,597 - 13,193,137 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1013,178,140 - 13,193,168 (-)EnsemblGRCm38mm10GRCm38
MGSCv371012,898,443 - 12,912,943 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361012,868,338 - 12,883,320 (-)NCBIMGSCv36mm8
Celera1013,077,424 - 13,091,756 (-)NCBICelera
Cytogenetic Map10A2NCBI
Ltv1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543616,580,704 - 16,592,044 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543616,580,412 - 16,593,093 (-)NCBIChiLan1.0ChiLan1.0
LTV1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16146,338,914 - 146,359,457 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6146,340,044 - 146,359,171 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06141,618,967 - 141,639,525 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
LTV1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1135,360,262 - 35,373,832 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha136,256,143 - 36,269,711 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0135,541,320 - 35,554,892 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl135,541,357 - 35,594,842 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1135,401,761 - 35,415,334 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0135,287,018 - 35,300,585 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0135,597,259 - 35,610,834 (+)NCBIUU_Cfam_GSD_1.0
Ltv1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946130,309,860 - 130,322,330 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366252,313,232 - 2,325,739 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LTV1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,412,286 - 21,430,195 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1121,406,949 - 21,430,252 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2123,807,023 - 23,818,338 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LTV1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11329,362,386 - 29,380,831 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1329,361,750 - 29,380,911 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660401,494,965 - 1,513,448 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ltv1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475310,428,383 - 10,444,913 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH134566  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.217,565,791 - 7,566,003 (+)MAPPERmRatBN7.2
Rnor_6.017,323,162 - 7,323,373NCBIRnor6.0
Rnor_5.018,958,410 - 8,958,621UniSTSRnor5.0
RGSC_v3.417,956,395 - 7,956,606UniSTSRGSC3.4
Celera16,054,677 - 6,054,888UniSTS
RH 3.4 Map1110.3UniSTS
Cytogenetic Map1p13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1416280711481482Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:23
Interacting mature miRNAs:27
Transcripts:ENSRNOT00000020453
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 51 35 19 35 8 11 74 35 41 11 8
Low 7 6 6 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000020453   ⟹   ENSRNOP00000020453
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl17,565,678 - 7,578,563 (-)Ensembl
Rnor_6.0 Ensembl17,323,040 - 7,335,936 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095261   ⟹   ENSRNOP00000090118
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl17,565,669 - 7,576,668 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106506   ⟹   ENSRNOP00000083961
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl17,565,669 - 7,577,704 (-)Ensembl
RefSeq Acc Id: NM_001014157   ⟹   NP_001014179
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.217,565,673 - 7,578,398 (-)NCBI
Rnor_6.017,323,043 - 7,335,766 (-)NCBI
Rnor_5.018,958,291 - 8,971,014 (-)NCBI
RGSC_v3.417,956,276 - 7,968,999 (-)RGD
Celera16,054,558 - 6,067,290 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001014179 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH79397 (Get FASTA)   NCBI Sequence Viewer  
  EDL93727 (Get FASTA)   NCBI Sequence Viewer  
  EDL93728 (Get FASTA)   NCBI Sequence Viewer  
  Q68FR7 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001014179   ⟸   NM_001014157
- UniProtKB: Q68FR7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000020453   ⟸   ENSRNOT00000020453
RefSeq Acc Id: ENSRNOP00000083961   ⟸   ENSRNOT00000106506
RefSeq Acc Id: ENSRNOP00000090118   ⟸   ENSRNOT00000095261

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FR7-F1-model_v2 AlphaFold Q68FR7 1-470 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689494
Promoter ID:EPDNEW_R19
Type:initiation region
Name:Ltv1_1
Description:LTV1 ribosome biogenesis factor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.017,335,860 - 7,335,920EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311264 AgrOrtholog
BioCyc Gene G2FUF-62365 BioCyc
Ensembl Genes ENSRNOG00000015217 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000020453 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000083961.1 UniProtKB/TrEMBL
  ENSRNOP00000090118.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020453 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000095261.1 UniProtKB/TrEMBL
  ENSRNOT00000106506.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7112501 IMAGE-MGC_LOAD
InterPro Ltv1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361452 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94927 IMAGE-MGC_LOAD
NCBI Gene 361452 ENTREZGENE
PANTHER PTHR21531 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam LTV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ltv1 PhenoGen
UniProt A0A8I5ZXR8_RAT UniProtKB/TrEMBL
  A0A8I6AD11_RAT UniProtKB/TrEMBL
  LTV1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-02-13 Ltv1  LTV1 ribosome biogenesis factor  Ltv1  LTV1 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Ltv1  LTV1 homolog (S. cerevisiae)  RGD1311264  similar to hypothetical protein FLJ14909  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1311264  similar to hypothetical protein FLJ14909  RGD1311264_predicted  similar to hypothetical protein FLJ14909 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311264_predicted  similar to hypothetical protein FLJ14909 (predicted)  LOC361452_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361452_predicted  similar to hypothetical protein FLJ14909 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL