Slc39a9 (solute carrier family 39, member 9)

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Gene: Slc39a9 (solute carrier family 39, member 9) Rattus norvegicus

Analyze

Symbol:

Slc39a9

Name:

solute carrier family 39, member 9

RGD ID:

1311236

Description:

Enables androgen binding activity. Involved in bicellular tight junction assembly. Predicted to be located in several cellular components, including mitochondrial membrane; perinuclear region of cytoplasm; and trans-Golgi network. Orthologous to human SLC39A9 (solute carrier family 39 member 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC314275; MGC125246; solute carrier family 39 (zinc transporter), member 9; solute carrier family 39 member 9; zinc transporter ZIP9; ZIP-9; zrt- and Irt-like protein 9

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC39A9 (solute carrier family 39 member 9)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc39a9 (solute carrier family 39 (zinc transporter), member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc39a9 (solute carrier family 39 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC39A9 (solute carrier family 39 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC39A9 (solute carrier family 39 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc39a9 (solute carrier family 39 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC39A9 (solute carrier family 39 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC39A9 (solute carrier family 39 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc39a9 (solute carrier family 39 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NLRP14 (NLR family pyrin domain containing 14)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SLC39A9 (solute carrier family 39 member 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc39a9 (solute carrier family 39 (zinc transporter), member 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc39a9 (solute carrier family 39 member 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ATX2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector)
Drosophila melanogaster (fruit fly):	Zip102B	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	zipt-9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc39a9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	100,291,577 - 100,330,419 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	100,291,573 - 100,330,408 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	100,458,380 - 100,497,295 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	6	100,758,083 - 100,796,998 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	6	100,132,399 - 100,171,259 (+)	NCBI	Rnor_WKY
Rnor_6.0	6	104,291,001 - 104,326,553 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	104,291,071 - 104,329,872 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	112,462,686 - 112,499,253 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	104,407,151 - 104,442,633 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	104,411,190 - 104,446,773 (+)	NCBI
Celera	6	98,149,923 - 98,185,395 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

acetamide (EXP)

acrolein (ISO)

alpha-pinene (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

cadmium atom (ISO)

calcitriol (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

inulin (ISO)

motexafin gadolinium (ISO)

ochratoxin A (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

prochloraz (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

sodium fluoride (ISO)

testosterone (ISO)

theophylline (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (ISO)

zidovudine (ISO)

zinc acetate (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

bicellular tight junction assembly (IDA,IMP)

G protein-coupled receptor signaling pathway (IEA)

intracellular zinc ion homeostasis (IEA,ISO,ISS)

regulation of cellular response to testosterone stimulus (IEA,ISO,ISS)

regulation of vascular endothelial cell proliferation (IEA,ISO,ISS)

zinc ion transmembrane transport (IEA,ISO,ISS)

Cellular Component

Golgi apparatus (IEA)

mitochondrial membrane (IEA,ISO,ISS)

mitochondrion (IEA,ISO,ISS)

nucleus (IEA,ISO,ISS)

perinuclear region of cytoplasm (IEA,ISO,ISS)

plasma membrane (IEA,ISO,ISS)

trans-Golgi network (IEA,ISO,ISS)

Molecular Function

androgen binding (IEA,IMP,ISO,ISS)

G protein-coupled receptor activity (IEA,ISO,ISS)

protein binding (ISO)

zinc efflux transmembrane transporter activity (IEA,ISO,ISS)

zinc ion transmembrane transporter activity (IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Non-classical testosterone signaling mediated through ZIP9 stimulates claudin expression and tight junction formation in Sertoli cells.	Bulldan A, etal., Cell Signal. 2016 Aug;28(8):1075-85. doi: 10.1016/j.cellsig.2016.04.015. Epub 2016 May 6.
2.	The Role of ZIP9 and Androgen Receptor in the Establishment of Tight Junctions between Adult Rat Sertoli Cells.	Kabbesh H, etal., Biology (Basel). 2022 Apr 26;11(5):668. doi: 10.3390/biology11050668.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Slc39a9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	100,291,577 - 100,330,419 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	100,291,573 - 100,330,408 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	100,458,380 - 100,497,295 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	6	100,758,083 - 100,796,998 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	6	100,132,399 - 100,171,259 (+)	NCBI	Rnor_WKY
Rnor_6.0	6	104,291,001 - 104,326,553 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	104,291,071 - 104,329,872 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	112,462,686 - 112,499,253 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	104,407,151 - 104,442,633 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	104,411,190 - 104,446,773 (+)	NCBI
Celera	6	98,149,923 - 98,185,395 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

SLC39A9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	69,398,384 - 69,462,390 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	14	69,398,015 - 69,462,390 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	69,865,101 - 69,929,107 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	68,935,704 - 68,997,021 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	68,935,703 - 68,997,021	NCBI
Celera	14	49,929,546 - 49,993,246 (+)	NCBI		Celera
Cytogenetic Map	14	q24.1	NCBI
HuRef	14	50,033,636 - 50,098,077 (+)	NCBI		HuRef
CHM1_1	14	69,803,233 - 69,867,245 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	63,611,539 - 63,675,542 (+)	NCBI		T2T-CHM13v2.0

Slc39a9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	80,690,657 - 80,730,116 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	80,690,657 - 80,730,116 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	80,643,883 - 80,683,342 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	80,643,883 - 80,683,342 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	81,745,202 - 81,784,329 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	81,563,057 - 81,598,689 (+)	NCBI		MGSCv36	mm8
MGSCv36	12	75,367,677 - 75,377,736 (+)	NCBI		MGSCv36	mm8
Celera	12	82,109,536 - 82,148,639 (+)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI

Slc39a9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	901,755 - 960,153 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	901,813 - 960,153 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC39A9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	14	69,737,795 - 69,803,690 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	49,990,089 - 50,056,782 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	68,863,117 - 68,929,863 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	68,863,770 - 68,929,863 (+)	Ensembl	panpan1.1		panPan2

SLC39A9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	43,225,409 - 43,269,371 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	43,225,650 - 43,268,712 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	42,914,879 - 42,958,854 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	43,455,501 - 43,499,293 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	43,455,741 - 43,499,288 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	43,070,159 - 43,113,912 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	43,144,449 - 43,188,212 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	43,503,733 - 43,547,713 (+)	NCBI		UU_Cfam_GSD_1.0

Slc39a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	61,509,227 - 61,562,559 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	12,629,274 - 12,682,762 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936495	12,629,303 - 12,681,837 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC39A9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	93,084,336 - 93,143,168 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	93,084,315 - 93,143,171 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	99,385,192 - 99,419,865 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC39A9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	46,642,307 - 46,708,349 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	46,643,304 - 46,704,569 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	34,862,779 - 34,929,114 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc39a9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	31,603,471 - 31,665,220 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	31,593,896 - 31,665,255 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc39a9
55 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	118
Count of miRNA genes:	99
Interacting mature miRNAs:	106
Transcripts:	ENSRNOT00000006798
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	10894415	110548006	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	15107216	107351382	Rat
634330	Pia16	Pristane induced arthritis QTL 16	3.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	6	45790088	104200226	Rat
6893332	Cm74	Cardiac mass QTL 74	0.4	0.64	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	57730540	104085867	Rat
1558641	Cm47	Cardiac mass QTL 47	2.9	0.001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	6	57730540	104085867	Rat
70176	Mcsm1	Mammary carcinoma susceptibility modifier QTL 1			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	58632962	103632962	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	61747639	106747639	Rat
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
1641904	Alcrsp4	Alcohol response QTL 4			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	6	67262953	112262953	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	71201409	116201409	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	72202632	115200186	Rat
70196	BpQTLcluster7	Blood pressure QTL cluster 7	6.82		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	72202632	117202632	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	72202632	130729475	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	72202632	130919985	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	72227641	130729205	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	72227641	130729205	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	73463459	109394713	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	81132889	104393926	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	81132889	104393926	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	82523650	110548006	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	83190345	106747639	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	84130881	129130881	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	85140138	130140138	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	85140138	130140138	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	85311061	133478515	Rat
1300076	Glom8	Glomerulus QTL 8	7	0.000000009	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	86894788	131894788	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	88047916	133047916	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	89762877	106752806	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	93701310	128713626	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	94968928	137848904	Rat
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	94968928	139968928	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	96833997	140994061	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	32	57	41	19	41	1	1	74	35	36	11	1
Low		11					7	10			5		7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001034929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399666	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240283	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC105849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000006798 ⟹ ENSRNOP00000006798

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	100,291,612 - 100,327,098 (+)	Ensembl
Rnor_6.0 Ensembl	6	104,291,071 - 104,326,551 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000089313 ⟹ ENSRNOP00000075500

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	100,291,573 - 100,330,408 (+)	Ensembl
Rnor_6.0 Ensembl	6	104,291,340 - 104,329,872 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000096583 ⟹ ENSRNOP00000076980

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	100,291,573 - 100,326,878 (+)	Ensembl

RefSeq Acc Id:

NM_001034929 ⟹ NP_001030101

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	100,291,612 - 100,327,100 (+)	NCBI
Rnor_6.0	6	104,291,071 - 104,326,553 (+)	NCBI
Rnor_5.0	6	112,462,686 - 112,499,253 (+)	NCBI
RGSC_v3.4	6	104,407,151 - 104,442,633 (+)	RGD
Celera	6	98,149,923 - 98,185,395 (+)	RGD

Sequence:

show sequence

GTCAGGGCCTGGCTGAGGGAAGTACCATGGGTAGCACCGGGTGTAGGACAGAGACAGCGTCGTA
TCGACTTTGCTGTTGAATCCTCCAGCCCATTGTTAGAGACTTGCAGGACATCTTGCCCGACTCT
AGACTCGAAAGGGACGTTGTCTTGGGGAGCGGGTCGTCGTGTCACCCTCATTCTGACGATTAAG
GAGATCTCTTTTTGCACAATTTCTCCATCTGTTACCTACCGGAATCCCAGTGACTGGCAACCAA
GTACCTAAGACTGCGCAAAGTTTTCTCTGGTGCTAGTATCAGCAAAAGGAGCTTGCTTCTTAAG
AGAGCGGCGGGCTTCATGAACTCACCGGCCGGTGGCAAGGCTGAAAGAAGTGAGGAAATTCCCG
TTTTCTTGGAAGACCACACGTTTAAACAGCCCAAGCGCCGTTTGAAACTGGAATTTTAAAGCCT
GGTGGAGGGGTGACTACAGGAGGGCAGAATGGATGACTTTCTCTCCATTAGTCTGCTGTCTTTG
GCAATGTTGGTGGGATGTTACGTGGCTGGAATCATTCCTTTGGCTGTTAATTTCTCAGAGGAAC
GGCTGAAGCTGGTGACTGTGTTGGGTGCTGGCCTTCTCTGTGGAACTGCACTGGCAGTCATCGT
GCCGGAAGGGGTGCATGCACTTTATGAGGAGGTCCTGGAGGGAAAACACCACCAAGCCAGTGAA
GCGAAGCAGAATGTGATTGCATCAGACAAAGCAGCAGAAATATCAGTTGTCCATGAGCATGAGC
ACAGCCACGACCACACACAGCTGCATGCCTACATTGGTGTGTCCCTGGTACTGGGCTTCGTTTT
CATGTTGCTCGTGGACCAGATTGGCAGCTCCCATGTGCATTCCACTGACGATCCAGAATCAGCA
AGGCCCAGCAGTTCCAAAATCACCACCACACTGGGGCTGGTTGTCCATGCTGCAGCTGATGGTG
TAGCTTTGGGAGCAGCAGCCTCTACTTCACAGACCAGTGTCCAGTTAATTGTGTTCGTGGCAAT
AATGCTACATAAGGCTCCAGCAGCATTTGGGCTGGTTTCCTTCCTGATGCATGCTGGCCTGGAG
CGGAATCGAATCAGAAAGCACTTGCTGGTCTTTGCACTGGCAGCACCAGCCATGTCCATGCTGA
CGTACTTAGGATTAAGTAAGAGCAGTAAAGAAGCCCTTTCAGAGGTCAATGCCACTGGAGTGGC
CATGCTTTTCTCTGCCGGGACATTTCTTTACGTTGCCACCGTCCATGTCCTCCCTGAGGACACC
AGCACTAACCAGTCAGGTTCCAGCCTCAGTCCACGGCCATTGCCATCGGGGAAGAACTAGCGTG
TGACGCTCCTCACTTCCTCAGTGTCTTGTCTCACCTTGCCCATCTCCACCCCTGTTCCTAGAGT
CCAAGGGAGATGAGAGTCAATCGTGGAAAGTGGGACAGCATATAGCAGGAACATCAGAATTAGA
CAGACTTTGTGTTGTCTTTTAAAGGGACTTTGATGTATAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

hide sequence

RefSeq Acc Id:

XM_006240283 ⟹ XP_006240345

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	100,291,577 - 100,330,419 (+)	NCBI
Rnor_6.0	6	104,291,001 - 104,326,549 (+)	NCBI
Rnor_5.0	6	112,462,686 - 112,499,253 (+)	NCBI

Sequence:

show sequence

AATCCGGAAGTGGGAGTAATGAAGAGGTGCCACTTGGCGGCCATGGCAGCTGTAGTATTGGCGG
CTCAGGGTCAGGGCCTGGCTGAGGGAAGTACCATGGGTAGCACCGGGTGTAGGACAGAGACAGC
GTCGTATCGACTTTGCTGTTGAATCCTCCAGCCCATTGTTAGAGACTTGCAGGACATCTTGCCC
GACTCTAGACTCGAAAGGGACGTTGTCTTGGGGAGCGGGTCGTCGTGTCACCCTCATTCTGACG
ATTAAGGAGATCTCTTTTTGCACAATTTCTCCATCTGTTACCTACCGGAATCCCAGTGACTGGC
AACCAAGTACCTAAGACTGCGCAAAGTTTTCTCTGGTGCTAGTATCAGCAAAAGGAGCTTGCTT
CTTAAGAGAGCGGCGGGCTTCATGAACTCACCGGCCGGTGGCAAGGCTGAAAGAAGTGAGGAAA
TTCCCGTTTTCTTGGAAGACCACACGTTTAAACAGCCCAAGCGCCGTTTGAAACTGGAATTTTA
AAGCCTGGTGGAGGGGTGACTACAGGAGGGCAGAATGGATGACTTTCTCTCCATTAGTCTGCTG
TCTTTGGCAATGTTGGTGGGATGTTACGTGGCTGGAATCATTCCTTTGGCTGTTAATTTCTCAG
AGGAACGGCTGAAGCTGGTGACTGTGTTGGGTGCTGGCCTTCTCTGTGGAACTGCACTGGCAGT
CATCGTGCCGGAAGGGGTGCATGCACTTTATGAGGAGGTCCTGGAGGGAAAACACCACCAAGCC
AGTGAAGCGAAGCAGAATGTGATTGCATCAGACAAAGCAGCAGAAATATCAGTTGTCCATGAGC
ATGAGCACAGCCACGACCACACACAGCTGCATGCCTACATTGGTGTGTCCCTGGTACTGGGCTT
CGTTTTCATGTTGCTCGTGGACCAGATTGGCAGCTCCCATGTGCATTCCACTGACGATCCAGAA
TCAGCAAGGCCCAGCAGTTCCAAAATCACCACCACACTGGGGCTGGTTGTCCATGCTGCAGCTG
ATGGTGTAGCTTTGGGAGCAGCAGCCTCTACTTCACAGACCAGTGTCCAGTTAATTGTGTTCGT
GGCAATAATGCTACATAAGGCTCCAGCAGCATTTGGGCTGGTTTCCTTCCTGATGCATGCTGGC
CTGGAGCGGAATCGAATCAGAAAGCACTTGCTGGTCTTTGCACTGGCAGCACCAGCCATGTCCA
TGCTGACGTACTTAGGATTAAGTAAGAGCAGTAAAGAAGCCCTTTCAGAGGTCAATGCCACTGG
AGTGGCCATGCTTTTCTCTGCCGGGACATTTCTTTACGTTGCCACCGTCCATGTCCTCCCTGAG
GTGGGTGGAATGGGGCACAGCCACAGACCTGACACCACTGGAGGGAGAGGCCTCAGCCGCCTTG
AGGTGGCAGCCCTGGTTCTGGGTTGCCTCATACCACTCATCCTCTCAATAGGACACCAGCACTA
ACCAGTCAGGTTCCAGCCTCAGTCCACGGCCATTGCCATCGGGGAAGAACTAGCGTGTGACGCT
CCTCACTTCCTCAGTGTCTTGTCTCACCTTGCCCATCTCCACCCCTGTTCCTAGAGTCCAAGGG
AGATGAGAGTCAATCGTGGAAAGTGGGACAGCATATAGCAGGAACATCAGAATTAGACAGACTT
TGTGTTGTCTTTTAAAGGGACTTTGAT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001030101	(Get FASTA)	NCBI Sequence Viewer
	NP_001386594	(Get FASTA)	NCBI Sequence Viewer
	NP_001386595	(Get FASTA)	NCBI Sequence Viewer
	NP_001386597	(Get FASTA)	NCBI Sequence Viewer
	NP_001386599	(Get FASTA)	NCBI Sequence Viewer
	XP_006240345	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05850	(Get FASTA)	NCBI Sequence Viewer
	EDL81388	(Get FASTA)	NCBI Sequence Viewer
	EDL81389	(Get FASTA)	NCBI Sequence Viewer
	EDL81390	(Get FASTA)	NCBI Sequence Viewer
	EDL81391	(Get FASTA)	NCBI Sequence Viewer
	Q3KR82	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001030101 ⟸ NM_001034929

- UniProtKB:

Q3KR82 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MDDFLSISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVHALYE
EVLEGKHHQASEAKQNVIASDKAAEISVVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQIGS
SHVHSTDDPESARPSSSKITTTLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAF
GLVSFLMHAGLERNRIRKHLLVFALAAPAMSMLTYLGLSKSSKEALSEVNATGVAMLFSAGTFL
YVATVHVLPEDTSTNQSGSSLSPRPLPSGKN

hide sequence

RefSeq Acc Id:	XP_006240345 ⟸ XM_006240283
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2KAR8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDDFLSISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVHALYE EVLEGKHHQASEAKQNVIASDKAAEISVVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQIGS SHVHSTDDPESARPSSSKITTTLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAF GLVSFLMHAGLERNRIRKHLLVFALAAPAMSMLTYLGLSKSSKEALSEVNATGVAMLFSAGTFL YVATVHVLPEVGGMGHSHRPDTTGGRGLSRLEVAALVLGCLIPLILSIGHQH hide sequence

RefSeq Acc Id:

ENSRNOP00000006798 ⟸ ENSRNOT00000006798

RefSeq Acc Id:

ENSRNOP00000075500 ⟸ ENSRNOT00000089313

RefSeq Acc Id:

ENSRNOP00000076980 ⟸ ENSRNOT00000096583

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3KR82-F1-model_v2	AlphaFold	Q3KR82	1-287	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694701

Promoter ID:

EPDNEW_R5224

Type:

multiple initiation site

Name:

Slc39a9_1

Description:

solute carrier family 39, member 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	104,291,018 - 104,291,078	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311236	AgrOrtholog
BioCyc Gene	G2FUF-36909	BioCyc
Ensembl Genes	ENSRNOG00000005052	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000006798	ENTREZGENE
	ENSRNOP00000006798.5	UniProtKB/Swiss-Prot
	ENSRNOP00000075500	ENTREZGENE
	ENSRNOP00000075500.1	UniProtKB/TrEMBL
	ENSRNOP00000076980.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000006798	ENTREZGENE
	ENSRNOT00000006798.7	UniProtKB/Swiss-Prot
	ENSRNOT00000089313	ENTREZGENE
	ENSRNOT00000089313.2	UniProtKB/TrEMBL
	ENSRNOT00000096583.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7457541	IMAGE-MGC_LOAD
InterPro	ZIP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZIP9	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:314275	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:125246	IMAGE-MGC_LOAD
NCBI Gene	314275	ENTREZGENE
PANTHER	PTHR16133	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ZINC TRANSPORTER ZIP9	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Zip	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc39a9	PhenoGen
UniProt	A0A0G2KAR8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5YBK4_RAT	UniProtKB/TrEMBL
	Q3KR82	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-02	Slc39a9	solute carrier family 39, member 9	Slc39a9	solute carrier family 39 (zinc transporter), member 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Slc39a9	solute carrier family 39 (zinc transporter), member 9	Slc39a9_predicted	solute carrier family 39 (zinc transporter), member 9 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Slc39a9_predicted	solute carrier family 39 (zinc transporter), member 9 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar