Ppil4 (peptidylprolyl isomerase like 4) - Rat Genome Database

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Gene: Ppil4 (peptidylprolyl isomerase like 4) Rattus norvegicus
Analyze
Symbol: Ppil4
Name: peptidylprolyl isomerase like 4
RGD ID: 1311051
Description: Predicted to enable RNA binding activity and peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in regulation of phosphorylation of RNA polymerase II C-terminal domain. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in nucleus. Orthologous to human PPIL4 (peptidylprolyl isomerase like 4); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC361449; peptidyl-prolyl cis-trans isomerase-like 4; peptidylprolyl isomerase (cyclophilin)-like 4; peptidylprolyl isomerase-like 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.212,273,582 - 2,306,212 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl12,273,609 - 2,305,632 (+)Ensembl
Rnor_6.011,897,316 - 1,930,311 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl11,897,338 - 1,929,763 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013,593,929 - 3,626,926 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.412,466,684 - 2,499,257 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.112,466,655 - 2,497,752 (+)NCBI
Celera1822,354 - 854,938 (+)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Ppil4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.212,273,582 - 2,306,212 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl12,273,609 - 2,305,632 (+)Ensembl
Rnor_6.011,897,316 - 1,930,311 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl11,897,338 - 1,929,763 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013,593,929 - 3,626,926 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.412,466,684 - 2,499,257 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.112,466,655 - 2,497,752 (+)NCBI
Celera1822,354 - 854,938 (+)NCBICelera
Cytogenetic Map1p13NCBI
PPIL4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386149,504,495 - 149,546,043 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6149,504,495 - 149,546,043 (-)EnsemblGRCh38hg38GRCh38
GRCh376149,825,631 - 149,867,179 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366149,867,324 - 149,908,864 (-)NCBINCBI36hg18NCBI36
Build 346149,867,323 - 149,908,864NCBI
Celera6150,560,719 - 150,602,255 (-)NCBI
Cytogenetic Map6q25.1NCBI
HuRef6147,392,338 - 147,433,888 (-)NCBIHuRef
CHM1_16150,090,379 - 150,131,968 (-)NCBICHM1_1
T2T-CHM13v2.06150,704,210 - 150,745,755 (-)NCBI
Ppil4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39107,668,653 - 7,698,329 (+)NCBIGRCm39mm39
GRCm39 Ensembl107,668,655 - 7,698,899 (+)Ensembl
GRCm38107,792,889 - 7,822,565 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl107,792,891 - 7,823,135 (+)EnsemblGRCm38mm10GRCm38
MGSCv37107,512,692 - 7,542,361 (+)NCBIGRCm37mm9NCBIm37
MGSCv36107,483,111 - 7,513,325 (+)NCBImm8
Celera107,671,600 - 7,701,253 (+)NCBICelera
Cytogenetic Map10A1NCBI
Ppil4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543911,704,834 - 11,746,548 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543911,705,096 - 11,745,478 (+)NCBIChiLan1.0ChiLan1.0
PPIL4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16152,029,650 - 152,071,336 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6152,029,650 - 152,071,336 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06147,323,295 - 147,365,129 (-)NCBIMhudiblu_PPA_v0panPan3
PPIL4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1140,296,957 - 40,342,116 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl140,296,957 - 40,342,759 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha141,133,955 - 41,179,115 (-)NCBI
ROS_Cfam_1.0140,476,789 - 40,521,969 (-)NCBI
ROS_Cfam_1.0 Ensembl140,474,474 - 40,522,019 (-)Ensembl
UMICH_Zoey_3.1140,353,033 - 40,398,188 (-)NCBI
UNSW_CanFamBas_1.0140,217,992 - 40,263,150 (-)NCBI
UU_Cfam_GSD_1.0140,558,603 - 40,604,005 (-)NCBI
Ppil4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946135,249,515 - 135,284,480 (-)NCBI
SpeTri2.0NW_0049364892,501,508 - 2,536,472 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPIL4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl116,400,983 - 16,446,854 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1116,400,938 - 16,446,860 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2118,675,426 - 18,763,800 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPIL4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11322,094,303 - 22,135,446 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1322,094,326 - 22,134,546 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666040198,117,847 - 198,158,508 (+)NCBIVero_WHO_p1.0
Ppil4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247858,518,595 - 8,565,262 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247858,518,567 - 8,569,933 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AI603613  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21363,463,041 - 63,463,257 (+)MAPPERmRatBN7.2
Rnor_6.01368,738,812 - 68,739,027NCBIRnor6.0
Rnor_6.011,920,942 - 1,922,537NCBIRnor6.0
Rnor_5.013,617,557 - 3,619,152UniSTSRnor5.0
Rnor_5.01373,701,191 - 73,701,406UniSTSRnor5.0
RGSC_v3.41366,252,892 - 66,253,107UniSTSRGSC3.4
Celera1363,393,937 - 63,394,152UniSTS
RH 3.4 Map13232.1UniSTS
Cytogenetic Map1p13UniSTS
Cytogenetic Map13q21UniSTS
BI297080  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.212,304,500 - 2,304,664 (+)MAPPERmRatBN7.2
Rnor_6.011,928,600 - 1,928,763NCBIRnor6.0
Rnor_5.013,625,215 - 3,625,378UniSTSRnor5.0
RGSC_v3.412,497,546 - 2,497,709UniSTSRGSC3.4
Celera1853,227 - 853,390UniSTS
RH 3.4 Map18.3UniSTS
Cytogenetic Map1p13UniSTS
RH141810  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.212,305,331 - 2,305,526 (+)MAPPERmRatBN7.2
Rnor_6.011,929,431 - 1,929,625NCBIRnor6.0
Rnor_5.013,626,046 - 3,626,240UniSTSRnor5.0
RGSC_v3.412,498,377 - 2,498,571UniSTSRGSC3.4
Celera1854,058 - 854,252UniSTS
RH 3.4 Map122.8UniSTS
Cytogenetic Map1p13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:477
Count of miRNA genes:265
Interacting mature miRNAs:312
Transcripts:ENSRNOT00000021437
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 29 38 22 19 22 2 2 74 35 39 11 2
Low 14 19 19 19 6 9 2 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000021437   ⟹   ENSRNOP00000021437
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl12,273,609 - 2,305,632 (+)Ensembl
Rnor_6.0 Ensembl11,897,338 - 1,929,763 (+)Ensembl
RefSeq Acc Id: NM_001108457   ⟹   NP_001101927
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212,273,637 - 2,306,212 (+)NCBI
Rnor_6.011,897,350 - 1,930,311 (+)NCBI
Rnor_5.013,593,929 - 3,626,926 (+)NCBI
RGSC_v3.412,466,684 - 2,499,257 (+)RGD
Celera1822,354 - 854,938 (+)RGD
Sequence:
RefSeq Acc Id: XM_039081048   ⟹   XP_038936976
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212,273,582 - 2,305,639 (+)NCBI
RefSeq Acc Id: XM_039081052   ⟹   XP_038936980
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.212,273,582 - 2,304,127 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001101927 (Get FASTA)   NCBI Sequence Viewer  
  NP_001381983 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936976 (Get FASTA)   NCBI Sequence Viewer  
  XP_038936980 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL93692 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001101927   ⟸   NM_001108457
- Sequence:
RefSeq Acc Id: ENSRNOP00000021437   ⟸   ENSRNOT00000021437
RefSeq Acc Id: XP_038936976   ⟸   XM_039081048
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038936980   ⟸   XM_039081052
- Peptide Label: isoform X2
Protein Domains
PPIase cyclophilin-type   RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AEG3-F1-model_v2 AlphaFold D4AEG3 1-492 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689482
Promoter ID:EPDNEW_R7
Type:initiation region
Name:Ppil4_1
Description:peptidylprolyl isomerase like 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.011,897,356 - 1,897,416EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311051 AgrOrtholog
BioCyc Gene G2FUF-62445 BioCyc
Ensembl Genes ENSRNOG00000015552 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000021437 ENTREZGENE
  ENSRNOP00000021437.7 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021437 ENTREZGENE
  ENSRNOT00000021437.8 UniProtKB/TrEMBL
Gene3D-CATH 2.40.100.10 UniProtKB/TrEMBL
  3.30.70.330 UniProtKB/TrEMBL
InterPro CRIP UniProtKB/TrEMBL
  Cyclophilin-like_dom UniProtKB/TrEMBL
  cyclophilin_PPIL4 UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  PPIase_cyclophilin UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_RNP1 UniProtKB/TrEMBL
NCBI Gene 361449 ENTREZGENE
PANTHER PTHR45843 UniProtKB/TrEMBL
Pfam Pro_isomerase UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
PhenoGen Ppil4 PhenoGen
PRINTS CSAPPISMRASE UniProtKB/TrEMBL
PROSITE CSA_PPIASE_2 UniProtKB/TrEMBL
  RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF50891 UniProtKB/TrEMBL
  SSF54928 UniProtKB/TrEMBL
UniProt D4AEG3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-02 Ppil4  peptidylprolyl isomerase like 4  Ppil4  peptidylprolyl isomerase (cyclophilin)-like 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Ppil4  peptidylprolyl isomerase (cyclophilin)-like 4   Ppil4_predicted  peptidylprolyl isomerase (cyclophilin)-like 4 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Ppil4_predicted  peptidylprolyl isomerase (cyclophilin)-like 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED