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Gene: Samd5 (sterile alpha motif domain containing 5) Rattus norvegicus
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Symbol: Samd5
Name: sterile alpha motif domain containing 5
Description: Predicted to have mitogen-activated protein kinase kinase kinase binding activity. Predicted to be involved in positive regulation of JUN kinase activity and positive regulation of NIK/NF-kappaB signaling. Predicted to localize to the cytoplasm. Orthologous to human SAMD5 (sterile alpha motif domain containing 5); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; manganese(II) chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC365038; RGD1311012; similar to RIKEN cDNA E130306M17 gene; sterile alpha motif domain-containing protein 5
Orthologs:
Homo sapiens (human) : SAMD5 (sterile alpha motif domain containing 5)  HGNC  Alliance
Mus musculus (house mouse) : Samd5 (sterile alpha motif domain containing 5)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Samd5 (sterile alpha motif domain containing 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Samd5 (sterile alpha motif domain containing 5)
Sus scrofa (pig) : SAMD5 (sterile alpha motif domain containing 5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.013,713,750 - 3,763,392 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.015,388,579 - 5,437,905 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414,269,126 - 4,333,486 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.114,293,531 - 4,333,198 (-)NCBI
Celera12,582,110 - 2,631,436 (-)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Samd5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1311012
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.