Ndst3 (N-deacetylase and N-sulfotransferase 3)

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Gene: Ndst3 (N-deacetylase and N-sulfotransferase 3) Rattus norvegicus

Analyze

Symbol:

Ndst3

Name:

N-deacetylase and N-sulfotransferase 3

RGD ID:

1310960

Description:

Predicted to have [heparan sulfate]-glucosamine N-sulfotransferase activity and heparan sulfate N-deacetylase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process. Predicted to localize to Golgi apparatus. Orthologous to human NDST3 (N-deacetylase and N-sulfotransferase 3); PARTICIPATES IN heparan sulfate biosynthetic pathway; INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; methamphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3; LOC295430; N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3; N-deacetylase/N-sulfotransferase 3

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	211,702,728 - 211,868,159 (-)	NCBI
Rnor_6.0 Ensembl	2	227,738,650 - 227,890,077 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	2	227,736,491 - 227,903,657 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	247,093,243 - 247,257,182 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	220,275,268 - 220,427,691 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	220,238,148 - 220,390,759 (-)	NCBI
Celera	2	204,116,633 - 204,266,078 (-)	NCBI		Celera
Cytogenetic Map	2	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

arsenous acid (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

carbamazepine (ISO)

crocidolite asbestos (ISO)

diarsenic trioxide (ISO)

entinostat (ISO)

methamphetamine (EXP)

methapyrilene (ISO)

poly(I:C) (EXP)

SCH 23390 (EXP)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

heparan sulfate proteoglycan biosynthetic process (ISO)

heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process (IBA,ISO)

heparin biosynthetic process (IEA)

Cellular Component

Golgi apparatus (IBA)

Golgi membrane (IEA)

integral component of membrane (IEA)

Molecular Function

[heparan sulfate]-glucosamine N-sulfotransferase activity (IBA,ISO)

deacetylase activity (IBA,ISO)

heparan sulfate N-deacetylase activity (ISO)

sulfotransferase activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

heparan sulfate biosynthetic pathway (IEA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Pipeline to import KEGG annotations from KEGG into RGD
3.	RGD automated data pipeline
4.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:9915799	PMID:11087757

Genomics

Comparative Map Data

Ndst3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	2	211,702,728 - 211,868,159 (-)	NCBI
Rnor_6.0 Ensembl	2	227,738,650 - 227,890,077 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	2	227,736,491 - 227,903,657 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	2	247,093,243 - 247,257,182 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	220,275,268 - 220,427,691 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	2	220,238,148 - 220,390,759 (-)	NCBI
Celera	2	204,116,633 - 204,266,078 (-)	NCBI		Celera
Cytogenetic Map	2	q42	NCBI

NDST3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	4	118,033,618 - 118,258,634 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	4	118,033,322 - 118,258,945 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	4	118,954,477 - 119,179,789 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	4	118,955,500 - 119,179,789 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	119,174,948 - 119,396,471 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	4	119,313,102 - 119,534,619	NCBI
Celera	4	116,246,834 - 116,470,914 (+)	NCBI
Cytogenetic Map	4	q26	NCBI
HuRef	4	114,690,968 - 114,915,210 (+)	NCBI		HuRef
CHM1_1	4	118,931,941 - 119,156,021 (+)	NCBI		CHM1_1

Ndst3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	123,319,815 - 123,484,822 (-)	NCBI	GRCm39		mm39
GRCm38	3	123,526,166 - 123,691,174 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	123,526,166 - 123,690,853 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	123,229,084 - 123,375,310 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	3	123,518,188 - 123,664,414 (-)	NCBI			mm8
Celera	3	129,957,784 - 130,108,254 (-)	NCBI		Celera
Cytogenetic Map	3	G1	NCBI

Ndst3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955428	21,671,358 - 21,853,483 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955428	21,671,432 - 21,853,492 (-)	NCBI	ChiLan1.0	ChiLan1.0

NDST3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	121,030,502 - 121,258,996 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	121,031,051 - 121,259,594 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	110,476,743 - 110,705,030 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

NDST3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	32	37,309,718 - 37,485,796 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	32	37,309,829 - 37,487,977 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Ndst3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936932	259,847 - 414,472 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NDST3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	105,221,348 - 105,370,019 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	105,221,344 - 105,370,067 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	112,936,356 - 113,071,738 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NDST3
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	65,792,906 - 66,004,628 (+)	NCBI

Ndst3
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624867	5,129,556 - 5,318,520 (+)	NCBI

Position Markers

D18Got3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	15	78,818,211 - 78,819,827	NCBI	Rnor6.0
Rnor_6.0	2	227,801,840 - 227,802,089	NCBI	Rnor6.0
Rnor_5.0	15	82,360,979 - 82,362,595	UniSTS	Rnor5.0
Rnor_5.0	2	247,157,620 - 247,157,869	UniSTS	Rnor5.0
RGSC_v3.4	2	220,339,029 - 220,339,279	RGD	RGSC3.4
RGSC_v3.4	3	35,596,780 - 35,597,061	RGD	RGSC3.4
RGSC_v3.1	2	220,302,091 - 220,302,341	RGD
Celera	2	204,179,888 - 204,180,137	UniSTS
Celera	15	70,621,751 - 70,623,367	UniSTS
RH 2.0 Map	18	829.0	RGD
Cytogenetic Map	2	q42	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631203	Gluco14	Glucose level QTL 14		0.0001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	2	221880206	235570970	Rat
61458	Bp10	Blood pressure QTL 10	3.42		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	204003742	231132207	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	184730446	229730446	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	184730446	229730446	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	181990297	240020001	Rat
1331745	Bp203	Blood pressure QTL 203	4.377		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	204585642	235290110	Rat
1298083	Bp158	Blood pressure QTL 158	2.62		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	204003742	231132207	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147122993	240020001	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	147122993	240020001	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	183984665	228984665	Rat
1581499	Esta2	Estrogen-induced thymic atrophy QTL 2			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	204585642	243689611	Rat
738013	Alc15	Alcohol consumption QTL 15	4.1	0.00022	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	2	199380312	244380312	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	116075644	228737869	Rat
1302789	Stl26	Serum triglyceride level QTL 26	3.1	0.0035	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	218957047	240977220	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	155965557	254121739	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	155965557	237742948	Rat
1598813	Memor9	Memory QTL 9	2.7		exploratory behavior trait (VT:0010471)	average horizontal distance in proximity to the target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	214870793	251212353	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	217743855	262743855	Rat
2301408	Kidm36	Kidney mass QTL 36		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	205583921	243562243	Rat
2298479	Eau5	Experimental allergic uveoretinitis QTL 5		0.0021	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	2	217498545	254132424	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	194378622	239378622	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	116075644	228737869	Rat
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	175403337	239166203	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83819608	239166203	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66828236	243550655	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83819608	243901375	Rat
2299161	Iddm33	Insulin dependent diabetes mellitus QTL 33	2.98		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	221488355	254121739	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	142053350	228984665	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	118446793	228582621	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	177680772	243901375	Rat
1359031	Bp275	Blood pressure QTL 275			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	200453324	236318668	Rat
1359031	Bp275	Blood pressure QTL 275			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	200453324	236318668	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	208594330	263179188	Rat
2293084	Iddm26	Insulin dependent diabetes mellitus QTL 26	2.9		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	188838511	228984665	Rat
61366	Iddm3	Insulin dependent diabetes mellitus QTL 3	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	204585642	249585642	Rat
61398	Bp50	Blood pressure QTL 50	4.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	204585642	249585642	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	194998627	239998627	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	197253963	242253963	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	197253963	242253963	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	197253963	242253963	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	169852670	243026643	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83754907	237610852	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	197253963	242253963	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	16679272	245624402	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	29
Count of miRNA genes:	26
Interacting mature miRNAs:	29
Transcripts:	ENSRNOT00000021335
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									31
Low		15	6		14				43	28	32	2
Below cutoff	3	22	22	12	5	12	8	8		6	8	9	8

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006233268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039102096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACYVU010000078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000021335 ⟹ ENSRNOP00000021335

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	2	227,738,650 - 227,890,077 (-)	Ensembl

RefSeq Acc Id:

NM_001191716 ⟹ NP_001178645

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	211,704,898 - 211,854,584 (-)	NCBI
Rnor_6.0	2	227,738,650 - 227,890,077 (-)	NCBI
Rnor_5.0	2	247,093,243 - 247,257,182 (-)	NCBI
Celera	2	204,116,633 - 204,266,078 (-)	NCBI

Sequence:

show sequence

GTGTTTCCTGTGAGTCCAGATATGCGATCCAGATGTGCTGCAATGGTGACATAAACTGTTGACT
GAGACTAGGAGCGTGCCTGAAACGCCATCCTTCCTCCTATTTTTTTTTAATGGTGCTTCTATTG
GAATAGTCAACGAAGTGCATCCAACATGAGTTTTATCATGAAACCTCACAGACACTTTCAAAGA
ACACTGATTCTGCTTGCCACCTTTTGTATGGTGAGCATCGTTATTTCTGCTTACTACCTGTACA
GCGGCTACAAACAGGAAAGTGAAGTCTCTGGGCGGGCTTCGGTAGTGGACTGTGGTGACCTCCA
GCACATACCATCCAGGCTGATGGAAGCGAAGAGGACAATGATTTCTGATGCTTCAAGGACAGAC
CCCACAGTCCTAGTGTTTGTGGAAAGCCAGTACTCATCTCTTGGTCAAGACATCATTATGATGC
TAGAATCCATCCGGTTCCATTATCACACAGAAATCGCTCCTGGAAAAGGCGATCTTCCAGCGCT
TACAGACAATGTGAAAGGCAAATACATTCTCATTATATATGAGAATATTCTAAAGTATATAAAC
ATGGACTCTTGGAATAGAAGCCTCTTAGATAAATACTGTATAGAGTATGGTGTGGGTATCATTG
GATTCCACAAAACCAATGAGAAAACCCTTCAGAGCTTTCAATCCCAGGGCTTCCCCTTTTCCAT
AAGTGGAAACCTGGCAGTAAAAGATTGCTGTATTAATCCTCACTCCCCTCTCCTTCGTGTGACC
AAATCATCCAAGCTTGACAGAGGTTCTTTACCTGGAGCTGACTGGACAGTTTTTCAGATTAATC
ACTCCACCTACCAGCCAGTAATATTTGCCAAAGTTAAGACTCCAGAAAACCTTTCTCCTCCCAT
CTCTAAACATGCATTTTATGCCACTATCATACATGACCTGGGGCTTCATGACGGGATCCAGCGA
GTTCTTTTTGGCAACAACTTGAACTTTTGGCTGCACAAGCTCATTTTCATAGATGCCCTCTCCT
TCTTGTCAGGGAAAAGACTGACACTGTCCTTGGACAGGTACATCCTTGTGGACATTGACGACAT
ATTTGTGGGGAAGGAGGGCACAAGGATGAACACCAATGATGTCAAGGCCCTGCTCGACACTCAG
AATCTTTTGCGCTCACAAATCACCAACTTTACTTTCAACCTTGGATTTTCAGGGAAATTTTATC
ACACGGGAACCGAAGAAGAAGATGCAGGGGATGACTGTCTGTTGGGGTCTGTGGATGAGTTCTG
GTGGTTTCCTCACATGTGGAGTCACATGCAGCCCCATCTCTTCCATAATGAGTCGTCTTTAATA
GAGCAGATGATTCTCAACAAAAAGTTCGCCTTAGAGCATGGCATCCCTACGGACATGGGCTACG
CAGTGTCCCCTCACCATTCAGGTGTCTACCCCGTACACGTTCAACTTTATGAGGCCTGGAAGAA
GGTTTGGAATATTAAAATCACCAGCACTGAAGAATATCCACATCTGAAACCAGCTAGGTATCGG
AGAGGCTTCATCCACAAAAACATCATGGTTCTCCCGAGACAAACCTGTGGACTCTTCACCCACA
CGATTTTCTACAAGGAGTACCCAGGGGGCCCCAGGGAACTGGACAAGAGTATTCATGGAGGGGA
GCTCTTCTTCACTGTGGTTCTCAACCCAATCAGTATTTTCATGACCCACTTGTCTAACTATGGA
AACGACCGGCTGGGATCATACACATTTGTGAACCTAGCCAATTTCGTGCAGACCTGGACCAACC
TGCGCCTTCAGACCCTGCCTCCGGCTCAGCTGGCTCACAAATATTTTGAGCTCTTTCCTGATCA
GAAAGACCCTCTCTGGCAGAATCCCTGTGATGACAAACGCCACAGAGACATTTGGTCTAAAGAA
AAAACCTGCGATCGCTTACCAAAATTCTTGGTAATAGGACCCCAGAAAACTGGTACCACTGCCT
TGTGTCTGTTCCTGATTATGCATCCTTCCATCCTTAGTAACTCCCCCAGCCCAAAATCCTTTGA
GGAGGTACAGTTCTTTAATAGAAATAACTACCACAGGGGGATTGATTGGTACATGGATTTCTTC
CCAGTCCCATCTAATGTCACCACTGACTTTCTGTTTGAGAAGAGTGCTAATTACTTCCATTCAG
AGGAAGCTCCTAAGAGAGCTGCTTCTCTAGTCCCGAAAGCCAAGATCATCACCATACTCATTGA
CCCGTCAGACCGAGCGTACTCCTGGTACCAGCATCAGCGATCCCACGAAGACCCCGCAGCTCTG
AAATTTAGCTTCTATGAAGTGATCTCTGCTGGGCCCAATGCACCCTGGGAACTCCGAACCCTGC
AGAAGAGATGCCTGGTCCCTGGATGGTACGCCAGCCACATCGAGAGATGGCTTGTTTATTTCCC
TCCATTTCAGCTGCTAATCATTGACGGGCAGCAGCTAAGAACTGCCCCTGCGACAGTGATGGAT
GAAGTCCAGAAGTTTCTAGGAGTCTCGCCTCATTATAATTACTCCGAAGCTTTAACGTTTGATT
CTCATAAAGGCTTCTGGTGTCAGTTGCTGGAAGAAGGGAAAACAAAATGTCTTGGGAAGAGTAA
AGGAAGAAAATACCCACCAATGGACTCGGATAGCAGAGCGTTTCTGTCCAGCTACTACCGAGAC
CACAACGTGGAGCTCTCGAAGCTGCTGCACAGACTCGGGCAGCCTCTGCCCTCGTGGCTGAGAC
AGGAGCTGCAGAAAGTGAGATAGC

hide sequence

RefSeq Acc Id:

XM_006233268 ⟹ XP_006233330

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	211,702,728 - 211,867,977 (-)	NCBI
Rnor_6.0	2	227,736,491 - 227,903,493 (-)	NCBI
Rnor_5.0	2	247,093,243 - 247,257,182 (-)	NCBI

Sequence:

show sequence

ACTGGATGGAGGGCAGGTCCTCACCTGGTCCAACCCTGGTCACTTGACATGCGGACTCCAGAAT
GTCAGAGAGACCATCCCAAGTTTCTAGCGACTGGAAACGAAGGGTCTTGAGATAGACACTCGTT
TAATTTATATGCAGCCTTTCCTTTCCTCTTTGAAATACGCTGATTTAAACAATGCAGAGACAAA
CCCCCGAGTTACTATGGGTTTGTAAATATAATCCTGAAAGTTTTTTTCATGGTGTGGTTCTTTG
CTTTCGCGTATTTATTAACCTGTTAACTCGGGCTAGTAGGAAATCGGCATTTGAAATATTCTTT
GAGGAACACGGGCAAGTTTCGATGGTGCTTTCAGACATCTGGTATTTGTCAGCTTAGTTAGTAG
CATCTGTCTTCCCTGAAGTGGTCCCCGTGCTGGTCCCTTGGAGATGGGTCTTGCATGTGCCGCT
CTTGCCCTCTAGTGCCTCGCCAGCTTGGTAGCAGTCTGATGGCTAATATTAATAAGACGATGTT
ACATAACAGGAGGGTACTGGCCAGCACTGCCCATACGGCCACTTGCAAAGGCAGAAAACCCAAC
CGAAGGCTGCATACACTCCTCTTTTGATTTTTTCTTGTCTGTCCACTGAAACTTTTCCCCGCAT
TTTCCAACTCTCTGAACTTTAATTCCAGACCGTGTTTCCTGTGAGTCCAGATATGCGATCCAGA
TGTGCTGCAATGGTGACATAAACTGTTGACTGAGACTAGGAGCGTGCCTGAAACGCCATCCTTC
CTCCTATTTTTTTTTAATGGTGCTTCTATTGGAATAGTCAACGAAGTGCATCCAACATGAGTTT
TATCATGAAACCTCACAGACACTTTCAAAGAACACTGATTCTGCTTGCCACCTTTTGTATGGTG
AGCATCGTTATTTCTGCTTACTACCTGTACAGCGGCTACAAACAGGAAAGTGAAGTCTCTGGGC
GGGCTTCGGTAGTGGACTGTGGTGACCTCCAGCACATACCATCCAGGCTGATGGAAGCGAAGAG
GACAATGATTTCTGATGCTTCAAGGACAGACCCCACAGTCCTAGTGTTTGTGGAAAGCCAGTAC
TCATCTCTTGGTCAAGACATCATTATGATGCTAGAATCCATCCGGTTCCATTATCACACAGAAA
TCGCTCCTGGAAAAGGCGATCTTCCAGCGCTTACAGACAATGTGAAAGGCAAATACATTCTCAT
TATATATGAGAATATTCTAAAGTATATAAACATGGACTCTTGGAATAGAAGCCTCTTAGATAAA
TACTGTATAGAGTATGGTGTGGGTATCATTGGATTCCACAAAACCAATGAGAAAACCCTTCAGA
GCTTTCAATCCCAGGGCTTCCCCTTTTCCATAAGTGGAAACCTGGCAGTAAAAGATTGCTGTAT
TAATCCTCACTCCCCTCTCCTTCGTGTGACCAAATCATCCAAGCTTGACAGAGGTTCTTTACCT
GGAGCTGACTGGACAGTTTTTCAGATTAATCACTCCACCTACCAGCCAGTAATATTTGCCAAAG
TTAAGACTCCAGAAAACCTTTCTCCTCCCATCTCTAAACATGCATTTTATGCCACTATCATACA
TGACCTGGGGCTTCATGACGGGATCCAGCGAGTTCTTTTTGGCAACAACTTGAACTTTTGGCTG
CACAAGCTCATTTTCATAGATGCCCTCTCCTTCTTGTCAGGGAAAAGACTGACACTGTCCTTGG
ACAGGTACATCCTTGTGGACATTGACGACATATTTGTGGGGAAGGAGGGCACAAGGATGAACAC
CAATGATGTCAAGGCCCTGCTCGACACTCAGAATCTTTTGCGCTCACAAATCACCAACTTTACT
TTCAACCTTGGATTTTCAGGGAAATTTTATCACACGGGAACCGAAGAAGAAGATGCAGGGGATG
ACTGTCTGTTGGGGTCTGTGGATGAGTTCTGGTGGTTTCCTCACATGTGGAGTCACATGCAGCC
CCATCTCTTCCATAATGAGTCGTCTTTAATAGAGCAGATGATTCTCAACAAAAAGTTCGCCTTA
GAGCATGGCATCCCTACGGACATGGGCTACGCAGTGTCCCCTCACCATTCAGGTGTCTACCCCG
TACACGTTCAACTTTATGAGGCCTGGAAGAAGGTTTGGAATATTAAAATCACCAGCACTGAAGA
ATATCCACATCTGAAACCAGCTAGGTATCGGAGAGGCTTCATCCACAAAAACATCATGGTTCTC
CCGAGACAAACCTGTGGACTCTTCACCCACACGATTTTCTACAAGGAGTACCCAGGGGGCCCCA
GGGAACTGGACAAGAGTATTCATGGAGGGGAGCTCTTCTTCACTGTGGTTCTCAACCCAATCAG
TATTTTCATGACCCACTTGTCTAACTATGGAAACGACCGGCTGGGATCATACACATTTGTGAAC
CTAGCCAATTTCGTGCAGACCTGGACCAACCTGCGCCTTCAGACCCTGCCTCCGGCTCAGCTGG
CTCACAAATATTTTGAGCTCTTTCCTGATCAGAAAGACCCTCTCTGGCAGAATCCCTGTGATGA
CAAACGCCACAGAGACATTTGGTCTAAAGAAAAAACCTGCGATCGCTTACCAAAATTCTTGGTA
ATAGGACCCCAGAAAACTGGTACCACTGCCTTGTGTCTGTTCCTGATTATGCATCCTTCCATCC
TTAGTAACTCCCCCAGCCCAAAATCCTTTGAGGAGGTACAGTTCTTTAATAGAAATAACTACCA
CAGGGGGATTGATTGGTACATGGATTTCTTCCCAGTCCCATCTAATGTCACCACTGACTTTCTG
TTTGAGAAGAGTGCTAATTACTTCCATTCAGAGGAAGCTCCTAAGAGAGCTGCTTCTCTAGTCC
CGAAAGCCAAGATCATCACCATACTCATTGACCCGTCAGACCGAGCGTACTCCTGGTACCAGCA
TCAGCGATCCCACGAAGACCCCGCAGCTCTGAAATTTAGCTTCTATGAAGTGATCTCTGCTGGG
CCCAATGCACCCTGGGAACTCCGAACCCTGCAGAAGAGATGCCTGGTCCCTGGATGGTACGCCA
GCCACATCGAGAGATGGCTTGTTTATTTCCCTCCATTTCAGCTGCTAATCATTGACGGGCAGCA
GCTAAGAACTGCCCCTGCGACAGTGATGGATGAAGTCCAGAAGTTTCTAGGAGTCTCGCCTCAT
TATAATTACTCCGAAGCTTTAACGTTTGATTCTCATAAAGGCTTCTGGTGTCAGTTGCTGGAAG
AAGGGAAAACAAAATGTCTTGGGAAGAGTAAAGGAAGAAAATACCCACCAATGGACTCGGATAG
CAGAGCGTTTCTGTCCAGCTACTACCGAGACCACAACGTGGAGCTCTCGAAGCTGCTGCACAGA
CTCGGGCAGCCTCTGCCCTCGTGGCTGAGACAGGAGCTGCAGAAAGTGAGATAGCGTGGAGAAA
ACAACAGGAAATCTATCCATCCGCGTACTGGCACAGACCTCATCCAGAGCTCACAGATGCTACC
AAAAAGCTCTCAGACACATACCTCTGCACCACGGAAAACAAGCAAGGCTCTCCCACGTGCCGGC
ACAAGGATGACTGTGGAGGGTCCCGGCATAAAAAATATCGTTAAGAAGCTCCCAGGCCTGTGGC
CTTCCTCTTAGATCTGATTCTTATAGAACAGCAACCAACATAAATTTTAAAACAAAACAAAAAA
CAGAAACATTGACACAGACCTGTACCATTTCATAGTAATATTTACAGTTCTGTATGTCAGCTGC
AGTTGTATTTCTGTAGATTCCTGGAGCACTGTTCGACTGTAAAATGTTTTTTTTACTTGATTCT
GTGAAGTATCCTATCACATCACAACGTAGAATTTCAAGTGTGGAAAAAAATGCTGTCAGCAAAG
GCCATGATTGTGGGAGAGCAGGGACCGGGAGCCGCCTGTGGGCTTTGTCCTCCAAACAGAGTTA
AGCAAAGGAGGTGGTTCTCCTTGTACATAGCCCAGTGACCTCTTGCTGATGTAGTTCTGTATTC
TGAACTTGCGAGACAGTAAACAGAAACACATATTTACATCAAAATAGCATATGTTAATGGAAGA
GTATTGACTAAATTCTCTGAGAGATATGGTGAGCAGATAGATACACCGGAGTACTCTTTGCTTT
CTGCTGTAAGCTGCCGGTCTATTCTGGCCACGTCCAGTTGTACCGAAATGCGTGTGGAGCCTTC
AGGAAGTGTTCTCTCTGAGTCACAGTGACCTTTAAATGTGCTGAGCAGGGGCTGGAGAAATGGC
TCTGTGGTGGGGGGCACTGACTGTTCTTCCAGAGGACCCAGGTTCAAATCCCAGCACCCACATG
GCAGCTCACGGCTGCCTCTAACTCCCAAGATCTGACATTCTCACACAGACAAACACTTAGGCAA
AACTCCAATGCACCTGAAATAAAGGTTAAAAAAAATTTAAAGTCCTTGTAAATGTGCAGAGTGG
CTACTGAACAAATTCTATTAACCGGAAACTAAGGACAGCTCCTTGAGGTGCTTAATTAAAGTAC
CCAGATTTAAATTATTGCAAAACTGTGTATTTCCAGGTAATCCCAAAGAAAATTGTGTAATGTA
CAGGCTTGTGTGATGATGGACTTATACACAAATTTTAATCTAATATTTAAAACGATGACTGTGT
GTCAGGGTGGAGACAACGGAGCGAGCAGGTGAAGCCCGGTGTTTGAGAACCCCTCACACATAGT
CCTCATCCTTGCCCAACAGCAGAGCGTCGTCCACCTTATGACCTATCTAGTAAGAATCACAGGG
AGTACAGAGATGAGCATGGCTCTTGAAATATATTTCATTTAAACGGGACACATGGTGAGTCACG
GATCCAAGACAAGAGTACAGTAGATCTCACTTTCCTGTGTTAATATAGACTTAATCTTGTTTTG
TGATTGATCCATATGTAAATCTATGGAGAACGTTCCTCGCTGGGACTGCATACGGTCCTATAAA
CTATTCTACAAGGTATATTTAGAAAAACCATATGCACGAAAATCAACAGCCTGAATATTTCTGT
CTGTTATTCCAGTGGCCTAGAACGGGCTATTCGTGTAGCTATTTGCCGGTTACAAAACAAGAGT
GGAGTAGAGTTAAGTGCCCCACGGCCGCCCCACTCACTACTTTTTTCCCTTACATCTTTATTTC
CACAATTATCGATTTCTCTATTTAAAGTTTTTCCATCTTTTATGAACTCGAAGAATACAGTGAT
TTTTTTTAAGCACTTACCAGAAAGAATCGTCTAAACAACCCAATTTTAAGGACCCTGACTGAGA
GGCCAAATCAAAATACAGTGAAATGAGTCTTCCCGCTTACTGCTACCAAGCCCAGCAGGACCAT
CATCCCTCACATCCGTGTCCATTAATTTAAGAAAATTGGCTCAAGGGGGTCATGAGCCCCAGCA
GCTCCAGCTGTTACAGCCTCACTGGTGACGGCGAGTCAGCTCAGGAAGCAAGCGGGGAAAATGA
ACTGACATATGTCTCCATGTTTGAACCTCTAGATAAATTGGCTACTGACATCCTTTCATGTAGG
GAGACAGTGCCTGTGAAATAAATGGCAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017590786 ⟹ XP_017446275

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	211,702,728 - 211,868,159 (-)	NCBI
Rnor_6.0	2	227,736,491 - 227,903,657 (-)	NCBI

Sequence:

show sequence

CTGGACCACTCGCCCTGCCAGCCCCGCCCGCCCCGCGCGCCCAGCCCACTCGGCTTGGGAGCGG
ATGCTGGGGGTGGCGGCTGCAGCCGTGGCTGCGCAGCAGGAGCGCAGAGAAGCGGAGGACCTGG
AGGCAGGATGCCGGCGCTCCACAGCCCGAGACCGTGTTTCCTGTGAGTCCAGATATGCGATCCA
GATGTGCTGCAATGGTGACATAAACTGTTGACTGAGACTAGGAGCGTGCCTGAAACGCCATCCT
TCCTCCTATTTTTTTTTAATGGTGCTTCTATTGGAATAGTCAACGAAGTGCATCCAACATGAGT
TTTATCATGAAACCTCACAGACACTTTCAAAGAACACTGATTCTGCTTGCCACCTTTTGTATGG
TGAGCATCGTTATTTCTGCTTACTACCTGTACAGCGGCTACAAACAGGAAAGTGAAGTCTCTGG
GCGGGCTTCGGTAGTGGACTGTGGTGACCTCCAGCACATACCATCCAGGCTGATGGAAGCGAAG
AGGACAATGATTTCTGATGCTTCAAGGACAGACCCCACAGTCCTAGTGTTTGTGGAAAGCCAGT
ACTCATCTCTTGGTCAAGACATCATTATGATGCTAGAATCCATCCGGTTCCATTATCACACAGA
AATCGCTCCTGGAAAAGGCGATCTTCCAGCGCTTACAGACAATGTGAAAGGCAAATACATTCTC
ATTATATATGAGAATATTCTAAAGTATATAAACATGGACTCTTGGAATAGAAGCCTCTTAGATA
AATACTGTATAGAGTATGGTGTGGGTATCATTGGATTCCACAAAACCAATGAGAAAACCCTTCA
GAGCTTTCAATCCCAGGGCTTCCCCTTTTCCATAAGTGGAAACCTGGCAGTAAAAGATTGCTGT
ATTAATCCTCACTCCCCTCTCCTTCGTGTGACCAAATCATCCAAGCTTGACAGAGGTTCTTTAC
CTGGAGCTGACTGGACAGTTTTTCAGATTAATCACTCCACCTACCAGCCAGTAATATTTGCCAA
AGTTAAGACTCCAGAAAACCTTTCTCCTCCCATCTCTAAACATGCATTTTATGCCACTATCATA
CATGACCTGGGGCTTCATGACGGGATCCAGCGAGTTCTTTTTGGCAACAACTTGAACTTTTGGC
TGCACAAGCTCATTTTCATAGATGCCCTCTCCTTCTTGTCAGGGAAAAGACTGACACTGTCCTT
GGACAGGTACATCCTTGTGGACATTGACGACATATTTGTGGGGAAGGAGGGCACAAGGATGAAC
ACCAATGATGTCAAGGCCCTGCTCGACACTCAGAATCTTTTGCGCTCACAAATCACCAACTTTA
CTTTCAACCTTGGATTTTCAGGGAAATTTTATCACACGGGAACCGAAGAAGAAGATGCAGGGGA
TGACTGTCTGTTGGGGTCTGTGGATGAGTTCTGGTGGTTTCCTCACATGTGGAGTCACATGCAG
CCCCATCTCTTCCATAATGAGTCGTCTTTAATAGAGCAGATGATTCTCAACAAAAAGTTCGCCT
TAGAGCATGGCATCCCTACGGACATGGGCTACGCAGTGTCCCCTCACCATTCAGGTGTCTACCC
CGTACACGTTCAACTTTATGAGGCCTGGAAGAAGGTTTGGAATATTAAAATCACCAGCACTGAA
GAATATCCACATCTGAAACCAGCTAGGTATCGGAGAGGCTTCATCCACAAAAACATCATGGTTC
TCCCGAGACAAACCTGTGGACTCTTCACCCACACGATTTTCTACAAGGAGTACCCAGGGGGCCC
CAGGGAACTGGACAAGAGTATTCATGGAGGGGAGCTCTTCTTCACTGTGGTTCTCAACCCAATC
AGTATTTTCATGACCCACTTGTCTAACTATGGAAACGACCGGCTGGGATCATACACATTTGTGA
ACCTAGCCAATTTCGTGCAGACCTGGACCAACCTGCGCCTTCAGACCCTGCCTCCGGCTCAGCT
GGCTCACAAATATTTTGAGCTCTTTCCTGATCAGAAAGACCCTCTCTGGCAGAATCCCTGTGAT
GACAAACGCCACAGAGACATTTGGTCTAAAGAAAAAACCTGCGATCGCTTACCAAAATTCTTGG
TAATAGGACCCCAGAAAACTGGTACCACTGCCTTGTGTCTGTTCCTGATTATGCATCCTTCCAT
CCTTAGTAACTCCCCCAGCCCAAAATCCTTTGAGGAGGTACAGTTCTTTAATAGAAATAACTAC
CACAGGGGGATTGATTGGTACATGGATTTCTTCCCAGTCCCATCTAATGTCACCACTGACTTTC
TGTTTGAGAAGAGTGCTAATTACTTCCATTCAGAGGAAGCTCCTAAGAGAGCTGCTTCTCTAGT
CCCGAAAGCCAAGATCATCACCATACTCATTGACCCGTCAGACCGAGCGTACTCCTGGTACCAG
CATCAGCGATCCCACGAAGACCCCGCAGCTCTGAAATTTAGCTTCTATGAAGTGATCTCTGCTG
GGCCCAATGCACCCTGGGAACTCCGAACCCTGCAGAAGAGATGCCTGGTCCCTGGATGGTACGC
CAGCCACATCGAGAGATGGCTTGTTTATTTCCCTCCATTTCAGCTGCTAATCATTGACGGGCAG
CAGCTAAGAACTGCCCCTGCGACAGTGATGGATGAAGTCCAGAAGTTTCTAGGAGTCTCGCCTC
ATTATAATTACTCCGAAGCTTTAACGTTTGATTCTCATAAAGGCTTCTGGTGTCAGTTGCTGGA
AGAAGGGAAAACAAAATGTCTTGGGAAGAGTAAAGGAAGAAAATACCCACCAATGGACTCGGAT
AGCAGAGCGTTTCTGTCCAGCTACTACCGAGACCACAACGTGGAGCTCTCGAAGCTGCTGCACA
GACTCGGGCAGCCTCTGCCCTCGTGGCTGAGACAGGAGCTGCAGAAAGTGAGATAGCGTGGAGA
AAACAACAGGAAATCTATCCATCCGCGTACTGGCACAGACCTCATCCAGAGCTCACAGATGCTA
CCAAAAAGCTCTCAGACACATACCTCTGCACCACGGAAAACAAGCAAGGCTCTCCCACGTGCCG
GCACAAGGATGACTGTGGAGGGTCCCGGCATAAAAAATATCGTTAAGAAGCTCCCAGGCCTGTG
GCCTTCCTCTTAGATCTGATTCTTATAGAACAGCAACCAACATAAATTTTAAAACAAAACAAAA
AACAGAAACATTGACACAGACCTGTACCATTTCATAGTAATATTTACAGTTCTGTATGTCAGCT
GCAGTTGTATTTCTGTAGATTCCTGGAGCACTGTTCGACTGTAAAATGTTTTTTTTACTTGATT
CTGTGAAGTATCCTATCACATCACAACGTAGAATTTCAAGTGTGGAAAAAAATGCTGTCAGCAA
AGGCCATGATTGTGGGAGAGCAGGGACCGGGAGCCGCCTGTGGGCTTTGTCCTCCAAACAGAGT
TAAGCAAAGGAGGTGGTTCTCCTTGTACATAGCCCAGTGACCTCTTGCTGATGTAGTTCTGTAT
TCTGAACTTGCGAGACAGTAAACAGAAACACATATTTACATCAAAATAGCATATGTTAATGGAA
GAGTATTGACTAAATTCTCTGAGAGATATGGTGAGCAGATAGATACACCGGAGTACTCTTTGCT
TTCTGCTGTAAGCTGCCGGTCTATTCTGGCCACGTCCAGTTGTACCGAAATGCGTGTGGAGCCT
TCAGGAAGTGTTCTCTCTGAGTCACAGTGACCTTTAAATGTGCTGAGCAGGGGCTGGAGAAATG
GCTCTGTGGTGGGGGGCACTGACTGTTCTTCCAGAGGACCCAGGTTCAAATCCCAGCACCCACA
TGGCAGCTCACGGCTGCCTCTAACTCCCAAGATCTGACATTCTCACACAGACAAACACTTAGGC
AAAACTCCAATGCACCTGAAATAAAGGTTAAAAAAAATTTAAAGTCCTTGTAAATGTGCAGAGT
GGCTACTGAACAAATTCTATTAACCGGAAACTAAGGACAGCTCCTTGAGGTGCTTAATTAAAGT
ACCCAGATTTAAATTATTGCAAAACTGTGTATTTCCAGGTAATCCCAAAGAAAATTGTGTAATG
TACAGGCTTGTGTGATGATGGACTTATACACAAATTTTAATCTAATATTTAAAACGATGACTGT
GTGTCAGGGTGGAGACAACGGAGCGAGCAGGTGAAGCCCGGTGTTTGAGAACCCCTCACACATA
GTCCTCATCCTTGCCCAACAGCAGAGCGTCGTCCACCTTATGACCTATCTAGTAAGAATCACAG
GGAGTACAGAGATGAGCATGGCTCTTGAAATATATTTCATTTAAACGGGACACATGGTGAGTCA
CGGATCCAAGACAAGAGTACAGTAGATCTCACTTTCCTGTGTTAATATAGACTTAATCTTGTTT
TGTGATTGATCCATATGTAAATCTATGGAGAACGTTCCTCGCTGGGACTGCATACGGTCCTATA
AACTATTCTACAAGGTATATTTAGAAAAACCATATGCACGAAAATCAACAGCCTGAATATTTCT
GTCTGTTATTCCAGTGGCCTAGAACGGGCTATTCGTGTAGCTATTTGCCGGTTACAAAACAAGA
GTGGAGTAGAGTTAAGTGCCCCACGGCCGCCCCACTCACTACTTTTTTCCCTTACATCTTTATT
TCCACAATTATCGATTTCTCTATTTAAAGTTTTTCCATCTTTTATGAACTCGAAGAATACAGTG
ATTTTTTTTAAGCACTTACCAGAAAGAATCGTCTAAACAACCCAATTTTAAGGACCCTGACTGA
GAGGCCAAATCAAAATACAGTGAAATGAGTCTTCCCGCTTACTGCTACCAAGCCCAGCAGGACC
ATCATCCCTCACATCCGTGTCCATTAATTTAAGAAAATTGGCTCAAGGGGGTCATGAGCCCCAG
CAGCTCCAGCTGTTACAGCCTCACTGGTGACGGCGAGTCAGCTCAGGAAGCAAGCGGGGAAAAT
GAACTGACATATGTCTCCATGTTTGAACCTCTAGATAAATTGGCTACTGACATCCTTTCATGTA
GGGAGACAGTGCCTGTGAAATAAATGGCAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039102095 ⟹ XP_038958023

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	211,728,159 - 211,868,159 (-)	NCBI

RefSeq Acc Id:

XM_039102096 ⟹ XP_038958024

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	2	211,776,382 - 211,868,159 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178645	(Get FASTA)	NCBI Sequence Viewer
	XP_006233330	(Get FASTA)	NCBI Sequence Viewer
	XP_017446275	(Get FASTA)	NCBI Sequence Viewer
	XP_038958023	(Get FASTA)	NCBI Sequence Viewer
	XP_038958024	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001178645 ⟸ NM_001191716

- UniProtKB:

D4ABE3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSFIMKPHRHFQRTLILLATFCMVSIVISAYYLYSGYKQESEVSGRASVVDCGDLQHIPSRLME
AKRTMISDASRTDPTVLVFVESQYSSLGQDIIMMLESIRFHYHTEIAPGKGDLPALTDNVKGKY
ILIIYENILKYINMDSWNRSLLDKYCIEYGVGIIGFHKTNEKTLQSFQSQGFPFSISGNLAVKD
CCINPHSPLLRVTKSSKLDRGSLPGADWTVFQINHSTYQPVIFAKVKTPENLSPPISKHAFYAT
IIHDLGLHDGIQRVLFGNNLNFWLHKLIFIDALSFLSGKRLTLSLDRYILVDIDDIFVGKEGTR
MNTNDVKALLDTQNLLRSQITNFTFNLGFSGKFYHTGTEEEDAGDDCLLGSVDEFWWFPHMWSH
MQPHLFHNESSLIEQMILNKKFALEHGIPTDMGYAVSPHHSGVYPVHVQLYEAWKKVWNIKITS
TEEYPHLKPARYRRGFIHKNIMVLPRQTCGLFTHTIFYKEYPGGPRELDKSIHGGELFFTVVLN
PISIFMTHLSNYGNDRLGSYTFVNLANFVQTWTNLRLQTLPPAQLAHKYFELFPDQKDPLWQNP
CDDKRHRDIWSKEKTCDRLPKFLVIGPQKTGTTALCLFLIMHPSILSNSPSPKSFEEVQFFNRN
NYHRGIDWYMDFFPVPSNVTTDFLFEKSANYFHSEEAPKRAASLVPKAKIITILIDPSDRAYSW
YQHQRSHEDPAALKFSFYEVISAGPNAPWELRTLQKRCLVPGWYASHIERWLVYFPPFQLLIID
GQQLRTAPATVMDEVQKFLGVSPHYNYSEALTFDSHKGFWCQLLEEGKTKCLGKSKGRKYPPMD
SDSRAFLSSYYRDHNVELSKLLHRLGQPLPSWLRQELQKVR

hide sequence

RefSeq Acc Id:	XP_006233330 ⟸ XM_006233268
- Peptide Label:	isoform X1
- UniProtKB:	D4ABE3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSFIMKPHRHFQRTLILLATFCMVSIVISAYYLYSGYKQESEVSGRASVVDCGDLQHIPSRLME AKRTMISDASRTDPTVLVFVESQYSSLGQDIIMMLESIRFHYHTEIAPGKGDLPALTDNVKGKY ILIIYENILKYINMDSWNRSLLDKYCIEYGVGIIGFHKTNEKTLQSFQSQGFPFSISGNLAVKD CCINPHSPLLRVTKSSKLDRGSLPGADWTVFQINHSTYQPVIFAKVKTPENLSPPISKHAFYAT IIHDLGLHDGIQRVLFGNNLNFWLHKLIFIDALSFLSGKRLTLSLDRYILVDIDDIFVGKEGTR MNTNDVKALLDTQNLLRSQITNFTFNLGFSGKFYHTGTEEEDAGDDCLLGSVDEFWWFPHMWSH MQPHLFHNESSLIEQMILNKKFALEHGIPTDMGYAVSPHHSGVYPVHVQLYEAWKKVWNIKITS TEEYPHLKPARYRRGFIHKNIMVLPRQTCGLFTHTIFYKEYPGGPRELDKSIHGGELFFTVVLN PISIFMTHLSNYGNDRLGSYTFVNLANFVQTWTNLRLQTLPPAQLAHKYFELFPDQKDPLWQNP CDDKRHRDIWSKEKTCDRLPKFLVIGPQKTGTTALCLFLIMHPSILSNSPSPKSFEEVQFFNRN NYHRGIDWYMDFFPVPSNVTTDFLFEKSANYFHSEEAPKRAASLVPKAKIITILIDPSDRAYSW YQHQRSHEDPAALKFSFYEVISAGPNAPWELRTLQKRCLVPGWYASHIERWLVYFPPFQLLIID GQQLRTAPATVMDEVQKFLGVSPHYNYSEALTFDSHKGFWCQLLEEGKTKCLGKSKGRKYPPMD SDSRAFLSSYYRDHNVELSKLLHRLGQPLPSWLRQELQKVR hide sequence

RefSeq Acc Id:	XP_017446275 ⟸ XM_017590786
- Peptide Label:	isoform X1
- UniProtKB:	D4ABE3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSFIMKPHRHFQRTLILLATFCMVSIVISAYYLYSGYKQESEVSGRASVVDCGDLQHIPSRLME AKRTMISDASRTDPTVLVFVESQYSSLGQDIIMMLESIRFHYHTEIAPGKGDLPALTDNVKGKY ILIIYENILKYINMDSWNRSLLDKYCIEYGVGIIGFHKTNEKTLQSFQSQGFPFSISGNLAVKD CCINPHSPLLRVTKSSKLDRGSLPGADWTVFQINHSTYQPVIFAKVKTPENLSPPISKHAFYAT IIHDLGLHDGIQRVLFGNNLNFWLHKLIFIDALSFLSGKRLTLSLDRYILVDIDDIFVGKEGTR MNTNDVKALLDTQNLLRSQITNFTFNLGFSGKFYHTGTEEEDAGDDCLLGSVDEFWWFPHMWSH MQPHLFHNESSLIEQMILNKKFALEHGIPTDMGYAVSPHHSGVYPVHVQLYEAWKKVWNIKITS TEEYPHLKPARYRRGFIHKNIMVLPRQTCGLFTHTIFYKEYPGGPRELDKSIHGGELFFTVVLN PISIFMTHLSNYGNDRLGSYTFVNLANFVQTWTNLRLQTLPPAQLAHKYFELFPDQKDPLWQNP CDDKRHRDIWSKEKTCDRLPKFLVIGPQKTGTTALCLFLIMHPSILSNSPSPKSFEEVQFFNRN NYHRGIDWYMDFFPVPSNVTTDFLFEKSANYFHSEEAPKRAASLVPKAKIITILIDPSDRAYSW YQHQRSHEDPAALKFSFYEVISAGPNAPWELRTLQKRCLVPGWYASHIERWLVYFPPFQLLIID GQQLRTAPATVMDEVQKFLGVSPHYNYSEALTFDSHKGFWCQLLEEGKTKCLGKSKGRKYPPMD SDSRAFLSSYYRDHNVELSKLLHRLGQPLPSWLRQELQKVR hide sequence

RefSeq Acc Id:

ENSRNOP00000021335 ⟸ ENSRNOT00000021335

RefSeq Acc Id:	XP_038958023 ⟸ XM_039102095
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038958024 ⟸ XM_039102096
- Peptide Label:	isoform X3

Protein Domains

HSNSD Sulfotransfer_1

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
2	247114988	247114989	C	G	snv	FHH/EurMcwi (MCW)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310960	AgrOrtholog
Ensembl Genes	ENSRNOG00000015781	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000021335	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021335	ENTREZGENE, UniProtKB/TrEMBL
InterPro	Heparan_SO4_deacetylase	UniProtKB/TrEMBL
	NST/OST	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Sulfotransferase_dom	UniProtKB/TrEMBL
KEGG Report	rno:295430	UniProtKB/TrEMBL
NCBI Gene	295430	ENTREZGENE
PANTHER	PTHR10605	UniProtKB/TrEMBL
Pfam	HSNSD	UniProtKB/TrEMBL
	Sulfotransfer_1	UniProtKB/TrEMBL
PhenoGen	Ndst3	PhenoGen
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	D4ABE3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-21	Ndst3	N-deacetylase and N-sulfotransferase 3	Ndst3	N-deacetylase/N-sulfotransferase 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-02-03	Ndst3	N-deacetylase/N-sulfotransferase 3	Ndst3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Ndst3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	Ndst3_predicted	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Ndst3_predicted	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Annotations - KEGG (archival)