Cenpn (centromere protein N) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Cenpn (centromere protein N) Rattus norvegicus
Analyze
Symbol: Cenpn
Name: centromere protein N
RGD ID: 1310953
Description: Predicted to be involved in chromosome segregation and kinetochore assembly. Predicted to localize to nucleoplasm. Orthologous to human CENPN (centromere protein N); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; acetamide; acrylamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: CENP-N; Da2-27; Da2-4; LOC361416; MGC94524; RGD1310953; similar to RIKEN cDNA 2610510J17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01949,457,461 - 49,479,989 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1949,340,184 - 49,479,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01960,248,687 - 60,271,301 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41947,029,240 - 47,051,557 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11947,034,120 - 47,056,438 (+)NCBI
Celera1944,244,906 - 44,267,223 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
1. RGD automated data pipeline
2. RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334  


Genomics

Comparative Map Data
Cenpn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01949,457,461 - 49,479,989 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1949,340,184 - 49,479,996 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01960,248,687 - 60,271,301 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41947,029,240 - 47,051,557 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11947,034,120 - 47,056,438 (+)NCBI
Celera1944,244,906 - 44,267,223 (+)NCBICelera
Cytogenetic Map19q12NCBI
CENPN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1681,006,498 - 81,033,114 (+)EnsemblGRCh38hg38GRCh38
GRCh381681,007,214 - 81,033,107 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371681,040,103 - 81,066,712 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361679,597,604 - 79,624,213 (+)NCBINCBI36hg18NCBI36
Celera1665,338,504 - 65,365,102 (+)NCBI
Cytogenetic Map16q23.2NCBI
HuRef1666,796,979 - 66,823,593 (+)NCBIHuRef
CHM1_11682,451,471 - 82,478,069 (+)NCBICHM1_1
Cenpn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398117,648,448 - 117,668,243 (+)NCBIGRCm39mm39
GRCm388116,921,716 - 116,941,504 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8116,921,730 - 116,941,507 (+)EnsemblGRCm38mm10GRCm38
MGSCv378119,445,640 - 119,465,403 (+)NCBIGRCm37mm9NCBIm37
MGSCv368119,807,717 - 119,827,480 (+)NCBImm8
Celera8121,141,125 - 121,160,889 (+)NCBICelera
Cytogenetic Map8E1NCBI
Cenpn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555223,804,578 - 3,818,885 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555223,801,856 - 3,818,675 (+)NCBIChiLan1.0ChiLan1.0
CENPN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11681,039,744 - 81,067,931 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1681,039,744 - 81,067,919 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01661,611,724 - 61,639,253 (+)NCBIMhudiblu_PPA_v0panPan3
CENPN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl570,798,886 - 70,820,960 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1570,798,322 - 70,820,927 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cenpn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647528,683,233 - 28,702,466 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl67,227,982 - 7,254,866 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.167,227,981 - 7,254,927 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CENPN
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl566,464,569 - 66,483,932 (+)Ensembl
ChlSab1.1566,459,008 - 66,483,945 (+)NCBI
Cenpn
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247466,309,194 - 6,331,152 (-)NCBI

Position Markers
AI136171  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01949,479,412 - 49,479,547NCBIRnor6.0
Rnor_5.01960,270,717 - 60,270,852UniSTSRnor5.0
RGSC_v3.41947,050,980 - 47,051,115UniSTSRGSC3.4
Celera1944,266,646 - 44,266,781UniSTS
Cytogenetic Map19q12UniSTS
RH 3.4 Map19596.8UniSTS
RH137130  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01949,479,793 - 49,479,972NCBIRnor6.0
Rnor_5.01960,271,098 - 60,271,277UniSTSRnor5.0
RGSC_v3.41947,051,361 - 47,051,540UniSTSRGSC3.4
Celera1944,267,027 - 44,267,206UniSTS
Cytogenetic Map19q12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19243296362275575Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19650676160220581Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191702800352538299Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191899398262275575Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191917749562275575Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)192140778762275575Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192481825762275575Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)193299439262275575Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193791679960220451Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193791679960220451Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194883071260220581Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:324
Count of miRNA genes:133
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000015158, ENSRNOT00000042458
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 26 24 18 11 18 37 20 35
Low 2 17 33 23 8 23 8 11 37 15 6 11 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000015158   ⟹   ENSRNOP00000015158
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1949,462,129 - 49,479,996 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000042458   ⟹   ENSRNOP00000050945
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1949,340,184 - 49,479,392 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000084445   ⟹   ENSRNOP00000071328
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1949,457,677 - 49,479,983 (+)Ensembl
RefSeq Acc Id: NM_001008366   ⟹   NP_001008367
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01949,457,677 - 49,479,989 (+)NCBI
Rnor_5.01960,248,687 - 60,271,301 (+)NCBI
RGSC_v3.41947,029,240 - 47,051,557 (+)RGD
Celera1944,244,906 - 44,267,223 (+)RGD
Sequence:
RefSeq Acc Id: XM_006255686   ⟹   XP_006255748
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01949,457,804 - 49,479,989 (+)NCBI
Rnor_5.01960,248,687 - 60,271,301 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255687   ⟹   XP_006255749
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01949,457,461 - 49,479,989 (+)NCBI
Rnor_5.01960,248,687 - 60,271,301 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255689   ⟹   XP_006255751
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01949,457,804 - 49,479,989 (+)NCBI
Rnor_5.01960,248,687 - 60,271,301 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255690   ⟹   XP_006255752
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01949,457,804 - 49,479,989 (+)NCBI
Rnor_5.01960,248,687 - 60,271,301 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255691   ⟹   XP_006255753
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01949,457,804 - 49,479,989 (+)NCBI
Rnor_5.01960,248,687 - 60,271,301 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006255692   ⟹   XP_006255754
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01949,457,673 - 49,479,989 (+)NCBI
Rnor_5.01960,248,687 - 60,271,301 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_001008367   ⟸   NM_001008366
- UniProtKB: Q5U2W4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006255749   ⟸   XM_006255687
- Peptide Label: isoform X1
- UniProtKB: Q5U2W4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006255754   ⟸   XM_006255692
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006255751   ⟸   XM_006255689
- Peptide Label: isoform X1
- UniProtKB: Q5U2W4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006255752   ⟸   XM_006255690
- Peptide Label: isoform X1
- UniProtKB: Q5U2W4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006255748   ⟸   XM_006255686
- Peptide Label: isoform X1
- UniProtKB: Q5U2W4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006255753   ⟸   XM_006255691
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000071328   ⟸   ENSRNOT00000084445
RefSeq Acc Id: ENSRNOP00000050945   ⟸   ENSRNOT00000042458
RefSeq Acc Id: ENSRNOP00000015158   ⟸   ENSRNOT00000015158

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701166
Promoter ID:EPDNEW_R11690
Type:multiple initiation site
Name:Cenpn_1
Description:centromere protein N
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01949,457,688 - 49,457,748EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310953 AgrOrtholog
Ensembl Genes ENSRNOG00000011296 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000015158 UniProtKB/TrEMBL
  ENSRNOP00000050945 UniProtKB/TrEMBL
  ENSRNOP00000071328 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015158 UniProtKB/TrEMBL
  ENSRNOT00000042458 UniProtKB/TrEMBL
  ENSRNOT00000084445 ENTREZGENE, UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7135799 IMAGE-MGC_LOAD
InterPro Chl4/mis15/CENP-N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:361416 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94524 IMAGE-MGC_LOAD
NCBI Gene 361416 ENTREZGENE
Pfam CENP-N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cenpn PhenoGen
UniGene Rn.65502 ENTREZGENE
UniProt A0A0H2UHI9_RAT UniProtKB/TrEMBL
  CENPN_RAT UniProtKB/Swiss-Prot
  F7EP77_RAT UniProtKB/TrEMBL
  Q5U2W4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-27 Cenpn  centromere protein N  RGD1310953  similar to RIKEN cDNA 2610510J17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1310953  similar to RIKEN cDNA 2610510J17  RGD1310953_predicted  similar to RIKEN cDNA 2610510J17 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1310953_predicted  similar to RIKEN cDNA 2610510J17 (predicted)  LOC361416_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361416_predicted  similar to RIKEN cDNA 2610510J17 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL