Bag5 (BAG cochaperone 5) - Rat Genome Database

Name: Bag5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Bag5 (BAG cochaperone 5) Rattus norvegicus

Analyze

Symbol:

Bag5

Name:

BAG cochaperone 5

RGD ID:

1310847

Description:

Enables protein-folding chaperone binding activity and ubiquitin protein ligase binding activity. Involved in negative regulation of protein refolding; negative regulation of ubiquitin-protein transferase activity; and regulation of inclusion body assembly. Predicted to be located in inclusion body; mitochondrion; and perinuclear region of cytoplasm. Predicted to be part of junctional membrane complex. Predicted to be active in cytosol; membrane; and nucleus. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 2F. Orthologous to human BAG5 (BAG cochaperone 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

BAG family molecular chaperone regulator 5; BAG-5; Bag5l1; bcl-2-associated athanogene 5; BCL2-associated athanogene 5; BCL2-associated athanogene 5-like 1; LOC366734; MGC95040

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BAG5 (BAG cochaperone 5)	RGD	RGD
Mus musculus (house mouse):	Bag5 (BCL2-associated athanogene 5)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Bag5 (BAG cochaperone 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BAG5 (BAG cochaperone 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BAG5 (BAG cochaperone 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Bag5 (BAG cochaperone 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BAG5 (BAG cochaperone 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BAG5 (BAG cochaperone 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Bag5 (BAG cochaperone 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	BAG5 (BAG cochaperone 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Bag5 (BCL2-associated athanogene 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	bag5 (BCL2 associated athanogene 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	bag5	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	130,768,467 - 130,772,122 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	130,768,141 - 130,772,970 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	130,935,653 - 130,939,308 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	6	131,232,623 - 131,236,278 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	6	130,598,651 - 130,602,306 (-)	NCBI	Rnor_WKY
Rnor_6.0	6	136,180,640 - 136,185,651 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	136,276,057 - 136,279,399 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	6	136,182,006 - 136,185,651 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	144,231,088 - 144,234,743 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	136,491,438 - 136,495,093 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	128,323,687 - 128,328,063 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease axonal type 2O (ISO)

dilated cardiomyopathy 2F (ISO)

genetic disease (ISO)

Mitochondrial Complex IV Deficiency, Nuclear Type 17 (ISO)

Parkinson's disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-carotene (ISO)

bisphenol A (EXP,ISO)

cisplatin (ISO)

coumestrol (ISO)

dexamethasone (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

emodin (ISO)

enzyme inhibitor (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

genistein (ISO)

hydrogen peroxide (ISO)

hydroquinone O-beta-D-glucopyranoside (ISO)

indometacin (ISO)

kojic acid (ISO)

methylmercury chloride (ISO)

N-methyl-4-phenylpyridinium (EXP)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

p-menthan-3-ol (ISO)

panobinostat (ISO)

paracetamol (ISO)

phenylmercury acetate (ISO)

piroxicam (ISO)

progesterone (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

T-2 toxin (EXP)

testosterone enanthate (ISO)

theophylline (ISO)

thioacetamide (EXP)

valproic acid (ISO)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Golgi organization (ISO)

negative regulation of neuron projection development (ISO)

negative regulation of oxidative stress-induced intrinsic apoptotic signaling pathway (ISO)

negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ISO)

negative regulation of protein refolding (IMP)

negative regulation of protein ubiquitination (IBA,IDA,ISO)

negative regulation of ubiquitin-protein transferase activity (IDA)

protein stabilization (IBA,ISO)

regulation of inclusion body assembly (IBA,IDA,ISO)

Cellular Component

cytosol (IBA,ISO)

inclusion body (ISO,ISS)

junctional membrane complex (ISO,ISS)

membrane (IBA)

mitochondrion (ISO)

nucleus (ISO)

perinuclear region of cytoplasm (ISO,ISS)

Molecular Function

adenyl-nucleotide exchange factor activity (IBA)

protein binding (ISO)

protein kinase binding (ISO)

protein-folding chaperone binding (IBA,IDA,ISO)

ubiquitin protein ligase binding (IPI,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	BAG5 inhibits parkin and enhances dopaminergic neuron degeneration.	Kalia SK, etal., Neuron. 2004 Dec 16;44(6):931-45.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:19946888	PMID:21630459	PMID:23146300	PMID:24270810	PMID:24475098	PMID:24510904	PMID:25006867	PMID:26729625	PMID:30053369	PMID:31922242

Genomics

Comparative Map Data

Bag5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	6	130,768,467 - 130,772,122 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	130,768,141 - 130,772,970 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	130,935,653 - 130,939,308 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	6	131,232,623 - 131,236,278 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	6	130,598,651 - 130,602,306 (-)	NCBI	Rnor_WKY
Rnor_6.0	6	136,180,640 - 136,185,651 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	136,276,057 - 136,279,399 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	6	136,182,006 - 136,185,651 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	144,231,088 - 144,234,743 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	136,491,438 - 136,495,093 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	128,323,687 - 128,328,063 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

BAG5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	103,556,551 - 103,562,657 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	14	103,556,545 - 103,562,657 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	104,022,888 - 104,028,994 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	103,092,642 - 103,098,904 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	103,093,191 - 103,098,383	NCBI
Celera	14	84,077,135 - 84,083,397 (-)	NCBI		Celera
Cytogenetic Map	14	q32.33	NCBI
HuRef	14	84,201,258 - 84,207,529 (-)	NCBI		HuRef
CHM1_1	14	103,961,075 - 103,967,345 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	97,792,597 - 97,798,702 (-)	NCBI		T2T-CHM13v2.0

Bag5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	111,675,922 - 111,679,690 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	111,675,922 - 111,679,691 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	111,709,488 - 111,713,256 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	111,709,488 - 111,713,257 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	112,947,699 - 112,951,467 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	112,157,666 - 112,161,064 (-)	NCBI		MGSCv36	mm8
Celera	12	112,902,986 - 112,907,498 (-)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI

Bag5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955538	2,412,297 - 2,415,132 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955538	2,412,297 - 2,416,094 (-)	NCBI	ChiLan1.0	ChiLan1.0

BAG5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	14	103,932,405 - 103,938,620 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	84,182,879 - 84,189,180 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	103,994,248 - 103,998,958 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	103,997,524 - 103,998,927 (-)	Ensembl	panpan1.1		panPan2

BAG5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	71,318,730 - 71,324,743 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	71,321,625 - 71,322,992 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	70,829,710 - 70,835,866 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	71,594,260 - 71,600,623 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	71,594,262 - 71,600,622 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	71,283,335 - 71,289,698 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	71,323,119 - 71,329,275 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	71,722,298 - 71,728,659 (-)	NCBI		UU_Cfam_GSD_1.0

Bag5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	2,742,453 - 2,749,300 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936621	1,574,033 - 1,575,376 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936621	1,573,237 - 1,578,257 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BAG5
(Sus scrofa - pig)

No map positions available.

BAG5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	81,496,664 - 81,502,969 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666053	68,800,966 - 68,807,186 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Bag5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624734	1,315,052 - 1,320,627 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Bag5
5 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	194
Count of miRNA genes:	138
Interacting mature miRNAs:	160
Transcripts:	ENSRNOT00000015333
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	72202632	130919985	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	85311061	133478515	Rat
1300076	Glom8	Glomerulus QTL 8	7	0.000000009	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	86894788	131894788	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	88047916	133047916	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	94968928	137848904	Rat
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	94968928	139968928	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	96833997	140994061	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	100364669	140994061	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	100671796	132340886	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	105156861	140994061	Rat
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	106752656	132339866	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	112636280	140994061	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	122549046	137801795	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	122549046	140286318	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	122549046	140994061	Rat
2312560	Pur20	Proteinuria QTL 20	2.1	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	125628133	137801795	Rat

Markers in Region

BI282898

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	130,768,960 - 130,769,151 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	136,276,201 - 136,276,391	NCBI	Rnor6.0
Rnor_6.0	6	136,182,490 - 136,182,680	NCBI	Rnor6.0
Rnor_5.0	6	144,234,059 - 144,234,249	UniSTS	Rnor5.0
RGSC_v3.4	6	136,491,932 - 136,492,122	UniSTS	RGSC3.4
Celera	6	128,324,181 - 128,324,371	UniSTS
RH 3.4 Map	6	780.91	UniSTS
Cytogenetic Map	6	q32	UniSTS

BE096446

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	130,768,545 - 130,768,703 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	136,275,786 - 136,275,943	NCBI	Rnor6.0
Rnor_6.0	6	136,182,075 - 136,182,232	NCBI	Rnor6.0
Rnor_5.0	6	144,234,507 - 144,234,664	UniSTS	Rnor5.0
RGSC_v3.4	6	136,491,517 - 136,491,674	UniSTS	RGSC3.4
Celera	6	128,323,766 - 128,323,923	UniSTS
RH 3.4 Map	6	781.5	UniSTS
Cytogenetic Map	6	q32	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium											7
Low	3	43	57	41	19	41	8	11	74	35	34	11	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001008526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776321	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776323	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC131885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY366364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000015333 ⟹ ENSRNOP00000015333

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	136,276,057 - 136,279,399 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000085594 ⟹ ENSRNOP00000071757

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	130,768,141 - 130,772,970 (-)	Ensembl
Rnor_6.0 Ensembl	6	136,182,006 - 136,185,651 (-)	Ensembl

RefSeq Acc Id:

NM_001008526 ⟹ NP_001008526

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	130,768,467 - 130,772,122 (-)	NCBI
Rnor_6.0	6	136,181,996 - 136,185,651 (-)	NCBI
Rnor_5.0	6	144,231,088 - 144,234,743 (+)	NCBI
RGSC_v3.4	6	136,491,438 - 136,495,093 (-)	RGD
Celera	6	128,323,687 - 128,328,063 (-)	RGD

Sequence:

show sequence

GGACGAGGAGGCGAGTTTTCTCCGGGCTCGGAGCTGAGGGGCCCGCTGTGCGAGGACGGCGACA
ACGCTGCGGAAGTGGAGGTGGCGGAGCGCGATGGCGCGTGCGGCACAGTGCTTGTGAAACTGAA
CACACAAGTATGGATATGGGAAACCAACACCCTTCTATTAGTAGGCTTCAGGAGATCCAACGGG
AAGTAAAGAGTATAGAGCAGCAAGTGGTTGGCTTCAGTGGCCTGTCGGATGACAAGAATTACAA
GAGACTGGAGAGGATTCTGACGAAACAACTTTTTGAAATCGACTCTGTGGATACAGAAGGGAAA
GGAGACATCCAGCAAGCTAGGAAGAGGGCAGCACAGGACACAGAACGCCTTCTCAAAGAGTTGG
AGCAGAACGCGAACCACCCACACCGGATTGAAATCAAGAATATCTTTCAAGAAGCTCAGGCCCT
TGTGAAAGAAAAGACTGTGCCCTTTTACAGTGGAAGCAACTGTGTGACTAGCGAGTTTGAGGAA
GCCATCCAGGACATCATTCTGAGGCTGACACATGTTAAAACAGGAGGGAAGATCTCCTTGCGGA
AAGCAAGGTACCACACACTAACCAAGATCTGTGCGGTACAAGAGATTATTGAAGACTGTGTGAG
GAAACAGCCTTCCCTGCCACTTTCCGAGGATGTGCATCCTTCTGTCGCCAAGATCAATTCTGTG
ATGTGTGAGGTGAACAAGGCCAGAGGTACTCTGATTGCACTTCTGATGGGCGTGGACAGTTCTG
AGACTTGCAGGCACTTATCATGCGTGCTGTCAGGACTGATGGCTGATTTAGATGCTCTAGATGT
GTGTGGGCGTACAGAGATCAGAAATTATCGGAGGGAGGTGGTGGAAGATATCAACAAATTACTA
AAATATCTAGATTTAGAAGAGGAAGCTGACAATACACATGCATTTGACCTGGGACAGAACCATT
CCATTATAAAGATAGAAAATGTCCTCAAGAGGATGAGAGAAATGAAAAATGAACTTCTCCAGGC
ACAGAGCCCTCCTGAATTGTACCTGAGGTCCAAGACAGAGCTGCAGGGCTTGATCGGGCAGCTG
GACGAAGTGAGTCTGGAGAAAAACCCCTGCATCAGAGAGGCCAGGAGAAGAGCAGTGATTGAGG
TGCAGACCCTCATCACGTACCTGGACCTGAAGGAGGCCCTCGAGAAGAGGAAGCTGTTCCCGTG
TGAGGAGACCCCCCCACATAAGGCTGTGTGGAATGTCCTTGGAAACCTGTCAGAGATCCAGGGT
GAAGTCCTCTCCTTTGGTGGGAACCGAACTGATAAGAACTACATTCGTCTGGAGGAGCTACTGA
CCAAACAGTTGCTGACTCTGGATGCTGTTGACCCACTGGGAGAAGAGAAGTGTAAGGCTGCCAG
GAAGCAGGCCGTGAAGCTGGCCCAGAACATCCTCAGCTACCTTGACATGAAGTCTGATGAGTGG
GAGTACTGACGGACCGCTGATCCTGCCGCTTTGCACTTTCTCTCCTCTGGAGAGCTTTCCGCTC
ATGGAGCCTAAATGTAATGTCTATGTGCATAGTCAATCTCAGTATTTATGATTTAATCAAATTA
TATTCAGTATTTCTGCTGCTTTTGATGTTGCAAAACGAATATCATTATAGCACATTAACTTTTC
CATCTGGCTCATTATCCTTACAATGTGTGCTTTGTGTTTATTTTGTGTGTTTTTAATGGGAACA
TGAAAAGGGCAGCATTCCTAAGTTTTAAATGGGTTGTGCAAGCATTAAATGCTTGAGAGTCTAG
AAACAGATCAAACTTTTCTAACTCTGGCCAAATTAAGAGGAGGAGGAAATTCTGGGGTTGACTA
AAGTCCAAGCAAACAAACATACAGAGATGCTTTATTCTGCTAAAAAGAGCTGGGACTTTAAAGT
CAGAAGGCCGGATGGGTCCTGCCTAATTTTAATGGGTGGGGTTTTTGTTTGGATGGTCTGTTTT
ATCATAAACATTTTTGCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006240601 ⟹ XP_006240663

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	130,768,467 - 130,771,920 (-)	NCBI
Rnor_6.0	6	136,180,640 - 136,185,353 (-)	NCBI
Rnor_5.0	6	144,231,088 - 144,234,743 (+)	NCBI

Sequence:

show sequence

GGCTGCCCGGGTCAGACCTAGCCGGGAAGGGCGAGGGGGATGACGCTGGGGGCTCCGCTCCGGT
GCCGCTCCCCGTGAAGGGCCGATCTCCCACCTCGCCGCCCTCCGCGGCAGCCAAGACCGCCGCC
ACCCAGACCTCTCGGAGTAAAGCGCTGCGAAGGCCGGGCTTGGACCCTCCCCAGGGACTGAGTT
CTGTGGCCTGCCCGCCAGAAGTGAGCTGTTTGACAGAAACCTGAGAGCGTGGGAAATGCTCTAA
GCACACTTACGGGGAGTGCTTGTGAAACTGAACACACAAGTATGGATATGGGAAACCAACACCC
TTCTATTAGTAGGCTTCAGGAGATCCAACGGGAAGTAAAGAGTATAGAGCAGCAAGTGGTTGGC
TTCAGTGGCCTGTCGGATGACAAGAATTACAAGAGACTGGAGAGGATTCTGACGAAACAACTTT
TTGAAATCGACTCTGTGGATACAGAAGGGAAAGGAGACATCCAGCAAGCTAGGAAGAGGGCAGC
ACAGGACACAGAACGCCTTCTCAAAGAGTTGGAGCAGAACGCGAACCACCCACACCGGATTGAA
ATCAAGAATATCTTTCAAGAAGCTCAGGCCCTTGTGAAAGAAAAGACTGTGCCCTTTTACAGTG
GAAGCAACTGTGTGACTAGCGAGTTTGAGGAAGCCATCCAGGACATCATTCTGAGGCTGACACA
TGTTAAAACAGGAGGGAAGATCTCCTTGCGGAAAGCAAGGTACCACACACTAACCAAGATCTGT
GCGGTACAAGAGATTATTGAAGACTGTGTGAGGAAACAGCCTTCCCTGCCACTTTCCGAGGATG
TGCATCCTTCTGTCGCCAAGATCAATTCTGTGATGTGTGAGGTGAACAAGGCCAGAGGTACTCT
GATTGCACTTCTGATGGGCGTGGACAGTTCTGAGACTTGCAGGCACTTATCATGCGTGCTGTCA
GGACTGATGGCTGATTTAGATGCTCTAGATGTGTGTGGGCGTACAGAGATCAGAAATTATCGGA
GGGAGGTGGTGGAAGATATCAACAAATTACTAAAATATCTAGATTTAGAAGAGGAAGCTGACAA
TACACATGCATTTGACCTGGGACAGAACCATTCCATTATAAAGATAGAAAATGTCCTCAAGAGG
ATGAGAGAAATGAAAAATGAACTTCTCCAGGCACAGAGCCCTCCTGAATTGTACCTGAGGTCCA
AGACAGAGCTGCAGGGCTTGATCGGGCAGCTGGACGAAGTGAGTCTGGAGAAAAACCCCTGCAT
CAGAGAGGCCAGGAGAAGAGCAGTGATTGAGGTGCAGACCCTCATCACGTACCTGGACCTGAAG
GAGGCCCTCGAGAAGAGGAAGCTGTTCCCGTGTGAGGAGACCCCCCCACATAAGGCTGTGTGGA
ATGTCCTTGGAAACCTGTCAGAGATCCAGGGTGAAGTCCTCTCCTTTGGTGGGAACCGAACTGA
TAAGAACTACATTCGTCTGGAGGAGCTACTGACCAAACAGTTGCTGACTCTGGATGCTGTTGAC
CCACTGGGAGAAGAGAAGTGTAAGGCTGCCAGGAAGCAGGCCGTGAAGCTGGCCCAGAACATCC
TCAGCTACCTTGACATGAAGTCTGATGAGTGGGAGTACTGACGGACCGCTGATCCTGCCGCTTT
GCACTTTCTCTCCTCTGGAGAGCTTTCCGCTCATGGAGCCTAAATGTAATGTCTATGTGCATAG
TCAATCTCAGTATTTATGATTTAATCAAATTATATTCAGTATTTCTGCTGCTTTTGATGTTGCA
AAACGAATATCATTATAGCACATTAACTTTTCCATCTGGCTCATTATCCTTACAATGTGTGCTT
TGTGTTTATTTTGTGTGTTTTTAATGGGAACATGAAAAGGGCAGCATTCCTAAGTTTTAAATGG
GTTGTGCAAGCATTAAATGCTTGAGAGTCTAGAAACAGATCAAACTTTTCTAACTCTGGCCAAA
TTAAGAGGAGGAGGAAATTCTGGGGTTGACTAAAGTCCAAGCAAACAAACATACAGAGATGCTT
TATTCTGCTAAAAAGAGCTGGGACTTTAAAGTCAGAAGGCCGGATGGGTCCTGCCTAATTTTAA
TGGGTGGGGTTTTTGTTTGGATGGTCTGTTTTATCATAAACATTTTTGCTTGAAAAAAAAAACT
GTTCCCCTGTGCTCTTCATTCTAGAGGGGGGATCTTGTGTACAGCACACACACAATGAATGGAG
CCTAACAGCCCAATGGAAACCACACTGAGGAAGGGAAGGAACATCACCTATTCAGTACCTTCCA
GCTATTTTTGCTTGTGTGATCTCGACTTAAAACTCTCCTTATTAGTTACTAAGGATAGGGCCAT
TTCAATGAAGCCAGTGCACCAAAGAGGACAAGGCCATCGCCGTCTGCCTGTAACCGCAGGATGA
AAGGTATAGTGTCCGATGTCCGGTCACTGCAGAGCCAGCAGGGGCATGATAGCGTAGATGAGAC
GGATTCCTCTGTCAGTCACAGCCGTAAAACAGACACACCTGTTAAACATAACATTACTCACACC
GTAATATGAAACACTTCTGTAAATCCAGAGGGACTGGTCTCTGCGGCCATGAGACAAAGTTAAC
TGCACCTTAAATACCACCTGTACGTACTTGGAGTGGGTCTGGGCGCCTGTGATGCCATCATTAG
AACCTGTCAGTTATGTAGGGGGCTTTATTATTCATTTTACCCTCCCATGTGCTCCTGTGAATGT
TTTCTAAGTAGCCAACGCTTTATGGCTGTCTATTAATGCAAGCAAAAGAACTCCCCAAACTTGT
GCAGCGCTTTGATAACGCAGGCCCCAGCATAACAGACCCCACCCCATGTTCCCATTTCTTTACA
TGATCCTGTGAGAGCTGACCTTTTCAACTCTGAAAAACTGTGGGTTGTTTATTTTTTGTAAAAA
ATTCTCTTTAAACAGCTAAAAGTATGGCAGGCGAATGGATTAGCTTTACGTACCGAAAGTGATA
AGCACAAAGCCCTAAGCTCGTGTGCACCATCTCTTCAAAAGCCCTTTACAGCTTTCCTACTGGG
AATGTTCTAGAACACTGGGTCCTGTGGGCTTGTGGCAGCGAGCTGTCCCCACTGCTGTCCCTGG
AATTCTCAGTTTGGTCAGAGCTGCCTGCTGCGACTTGTGTGTCCTAGCCTTAGAATGCTCAAGT
CTTAAGTCACTTTCTGTGTATCTGTCACCTGGTTACTAATTCTTTAGCTTCATTTTGAGAGTCA
GCCTCTCTCTCTCTCAAGAGTATCCATTGTTCCGTTGAGGAAGATATTTGTCTCTCTAAAGTGA
TTTTCCTGTCACCTGCCAGGACACCCCACGCTGCTGAGCTTGGAGCCTCGCTTAACGCTGGAGG
CTTTCCCCAGGCCACAGGGTTTTGCACGCGAATCCTCTGGGGCTTGGAGGTGGGCACATGAGTT
TGTGTGGCTGTTGGGGTAGGCGTTGTCTCCGTTACAGCTCCTTGGACCCAGTTGTTTCATAAAG
AATAAGCAAA

hide sequence

RefSeq Acc Id:

XM_006240602 ⟹ XP_006240664

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	130,768,467 - 130,771,920 (-)	NCBI
Rnor_6.0	6	136,180,640 - 136,185,353 (-)	NCBI
Rnor_5.0	6	144,231,088 - 144,234,743 (+)	NCBI

Sequence:

show sequence

GGCTGCCCGGGTCAGACCTAGCCGGGAAGGGCGAGGGGGATGACGCTGGGGGCTCCGCTCCGGT
GCCGCTCCCCGTGAAGGGCCGATCTCCCACCTCGCCGCCCTCCGCGGCAGCCAAGACCGCCGCC
ACCCAGACCTCTCGGAGTAAAGCGCTGCGAAGGCCGGGCTTGGACCCTCCCCAGGGACTGAGTT
CTGTGGCCTGCCCGCCAGAATGCTTGTGAAACTGAACACACAAGTATGGATATGGGAAACCAAC
ACCCTTCTATTAGTAGGCTTCAGGAGATCCAACGGGAAGTAAAGAGTATAGAGCAGCAAGTGGT
TGGCTTCAGTGGCCTGTCGGATGACAAGAATTACAAGAGACTGGAGAGGATTCTGACGAAACAA
CTTTTTGAAATCGACTCTGTGGATACAGAAGGGAAAGGAGACATCCAGCAAGCTAGGAAGAGGG
CAGCACAGGACACAGAACGCCTTCTCAAAGAGTTGGAGCAGAACGCGAACCACCCACACCGGAT
TGAAATCAAGAATATCTTTCAAGAAGCTCAGGCCCTTGTGAAAGAAAAGACTGTGCCCTTTTAC
AGTGGAAGCAACTGTGTGACTAGCGAGTTTGAGGAAGCCATCCAGGACATCATTCTGAGGCTGA
CACATGTTAAAACAGGAGGGAAGATCTCCTTGCGGAAAGCAAGGTACCACACACTAACCAAGAT
CTGTGCGGTACAAGAGATTATTGAAGACTGTGTGAGGAAACAGCCTTCCCTGCCACTTTCCGAG
GATGTGCATCCTTCTGTCGCCAAGATCAATTCTGTGATGTGTGAGGTGAACAAGGCCAGAGGTA
CTCTGATTGCACTTCTGATGGGCGTGGACAGTTCTGAGACTTGCAGGCACTTATCATGCGTGCT
GTCAGGACTGATGGCTGATTTAGATGCTCTAGATGTGTGTGGGCGTACAGAGATCAGAAATTAT
CGGAGGGAGGTGGTGGAAGATATCAACAAATTACTAAAATATCTAGATTTAGAAGAGGAAGCTG
ACAATACACATGCATTTGACCTGGGACAGAACCATTCCATTATAAAGATAGAAAATGTCCTCAA
GAGGATGAGAGAAATGAAAAATGAACTTCTCCAGGCACAGAGCCCTCCTGAATTGTACCTGAGG
TCCAAGACAGAGCTGCAGGGCTTGATCGGGCAGCTGGACGAAGTGAGTCTGGAGAAAAACCCCT
GCATCAGAGAGGCCAGGAGAAGAGCAGTGATTGAGGTGCAGACCCTCATCACGTACCTGGACCT
GAAGGAGGCCCTCGAGAAGAGGAAGCTGTTCCCGTGTGAGGAGACCCCCCCACATAAGGCTGTG
TGGAATGTCCTTGGAAACCTGTCAGAGATCCAGGGTGAAGTCCTCTCCTTTGGTGGGAACCGAA
CTGATAAGAACTACATTCGTCTGGAGGAGCTACTGACCAAACAGTTGCTGACTCTGGATGCTGT
TGACCCACTGGGAGAAGAGAAGTGTAAGGCTGCCAGGAAGCAGGCCGTGAAGCTGGCCCAGAAC
ATCCTCAGCTACCTTGACATGAAGTCTGATGAGTGGGAGTACTGACGGACCGCTGATCCTGCCG
CTTTGCACTTTCTCTCCTCTGGAGAGCTTTCCGCTCATGGAGCCTAAATGTAATGTCTATGTGC
ATAGTCAATCTCAGTATTTATGATTTAATCAAATTATATTCAGTATTTCTGCTGCTTTTGATGT
TGCAAAACGAATATCATTATAGCACATTAACTTTTCCATCTGGCTCATTATCCTTACAATGTGT
GCTTTGTGTTTATTTTGTGTGTTTTTAATGGGAACATGAAAAGGGCAGCATTCCTAAGTTTTAA
ATGGGTTGTGCAAGCATTAAATGCTTGAGAGTCTAGAAACAGATCAAACTTTTCTAACTCTGGC
CAAATTAAGAGGAGGAGGAAATTCTGGGGTTGACTAAAGTCCAAGCAAACAAACATACAGAGAT
GCTTTATTCTGCTAAAAAGAGCTGGGACTTTAAAGTCAGAAGGCCGGATGGGTCCTGCCTAATT
TTAATGGGTGGGGTTTTTGTTTGGATGGTCTGTTTTATCATAAACATTTTTGCTTGAAAAAAAA
AACTGTTCCCCTGTGCTCTTCATTCTAGAGGGGGGATCTTGTGTACAGCACACACACAATGAAT
GGAGCCTAACAGCCCAATGGAAACCACACTGAGGAAGGGAAGGAACATCACCTATTCAGTACCT
TCCAGCTATTTTTGCTTGTGTGATCTCGACTTAAAACTCTCCTTATTAGTTACTAAGGATAGGG
CCATTTCAATGAAGCCAGTGCACCAAAGAGGACAAGGCCATCGCCGTCTGCCTGTAACCGCAGG
ATGAAAGGTATAGTGTCCGATGTCCGGTCACTGCAGAGCCAGCAGGGGCATGATAGCGTAGATG
AGACGGATTCCTCTGTCAGTCACAGCCGTAAAACAGACACACCTGTTAAACATAACATTACTCA
CACCGTAATATGAAACACTTCTGTAAATCCAGAGGGACTGGTCTCTGCGGCCATGAGACAAAGT
TAACTGCACCTTAAATACCACCTGTACGTACTTGGAGTGGGTCTGGGCGCCTGTGATGCCATCA
TTAGAACCTGTCAGTTATGTAGGGGGCTTTATTATTCATTTTACCCTCCCATGTGCTCCTGTGA
ATGTTTTCTAAGTAGCCAACGCTTTATGGCTGTCTATTAATGCAAGCAAAAGAACTCCCCAAAC
TTGTGCAGCGCTTTGATAACGCAGGCCCCAGCATAACAGACCCCACCCCATGTTCCCATTTCTT
TACATGATCCTGTGAGAGCTGACCTTTTCAACTCTGAAAAACTGTGGGTTGTTTATTTTTTGTA
AAAAATTCTCTTTAAACAGCTAAAAGTATGGCAGGCGAATGGATTAGCTTTACGTACCGAAAGT
GATAAGCACAAAGCCCTAAGCTCGTGTGCACCATCTCTTCAAAAGCCCTTTACAGCTTTCCTAC
TGGGAATGTTCTAGAACACTGGGTCCTGTGGGCTTGTGGCAGCGAGCTGTCCCCACTGCTGTCC
CTGGAATTCTCAGTTTGGTCAGAGCTGCCTGCTGCGACTTGTGTGTCCTAGCCTTAGAATGCTC
AAGTCTTAAGTCACTTTCTGTGTATCTGTCACCTGGTTACTAATTCTTTAGCTTCATTTTGAGA
GTCAGCCTCTCTCTCTCTCAAGAGTATCCATTGTTCCGTTGAGGAAGATATTTGTCTCTCTAAA
GTGATTTTCCTGTCACCTGCCAGGACACCCCACGCTGCTGAGCTTGGAGCCTCGCTTAACGCTG
GAGGCTTTCCCCAGGCCACAGGGTTTTGCACGCGAATCCTCTGGGGCTTGGAGGTGGGCACATG
AGTTTGTGTGGCTGTTGGGGTAGGCGTTGTCTCCGTTACAGCTCCTTGGACCCAGTTGTTTCAT
AAAGAATAAGCAAA

hide sequence

RefSeq Acc Id:

XM_006240603 ⟹ XP_006240665

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	6	130,768,467 - 130,771,513 (-)	NCBI
Rnor_6.0	6	136,180,640 - 136,185,073 (-)	NCBI
Rnor_5.0	6	144,231,088 - 144,234,743 (+)	NCBI

Sequence:

show sequence

CCGAGTTAATCGCAGTCGTCAGGTTTTTGCGGCGGGTACTTGAAGTCGAGGGCGAGGATTTGGA
CGTTTTCTTAGTTCCACTTTCTGAAAAGTAGCAAGTTTAGCTGTCTGTCCGAATGCTGCTCCTG
TCAGTTTGGAAGAGCTACTTCCACAAGGGCACCCTGCTGGTTCCAAAGACTAGCTTAGTGCTTG
TGAAACTGAACACACAAGTATGGATATGGGAAACCAACACCCTTCTATTAGTAGGCTTCAGGAG
ATCCAACGGGAAGTAAAGAGTATAGAGCAGCAAGTGGTTGGCTTCAGTGGCCTGTCGGATGACA
AGAATTACAAGAGACTGGAGAGGATTCTGACGAAACAACTTTTTGAAATCGACTCTGTGGATAC
AGAAGGGAAAGGAGACATCCAGCAAGCTAGGAAGAGGGCAGCACAGGACACAGAACGCCTTCTC
AAAGAGTTGGAGCAGAACGCGAACCACCCACACCGGATTGAAATCAAGAATATCTTTCAAGAAG
CTCAGGCCCTTGTGAAAGAAAAGACTGTGCCCTTTTACAGTGGAAGCAACTGTGTGACTAGCGA
GTTTGAGGAAGCCATCCAGGACATCATTCTGAGGCTGACACATGTTAAAACAGGAGGGAAGATC
TCCTTGCGGAAAGCAAGGTACCACACACTAACCAAGATCTGTGCGGTACAAGAGATTATTGAAG
ACTGTGTGAGGAAACAGCCTTCCCTGCCACTTTCCGAGGATGTGCATCCTTCTGTCGCCAAGAT
CAATTCTGTGATGTGTGAGGTGAACAAGGCCAGAGGTACTCTGATTGCACTTCTGATGGGCGTG
GACAGTTCTGAGACTTGCAGGCACTTATCATGCGTGCTGTCAGGACTGATGGCTGATTTAGATG
CTCTAGATGTGTGTGGGCGTACAGAGATCAGAAATTATCGGAGGGAGGTGGTGGAAGATATCAA
CAAATTACTAAAATATCTAGATTTAGAAGAGGAAGCTGACAATACACATGCATTTGACCTGGGA
CAGAACCATTCCATTATAAAGATAGAAAATGTCCTCAAGAGGATGAGAGAAATGAAAAATGAAC
TTCTCCAGGCACAGAGCCCTCCTGAATTGTACCTGAGGTCCAAGACAGAGCTGCAGGGCTTGAT
CGGGCAGCTGGACGAAGTGAGTCTGGAGAAAAACCCCTGCATCAGAGAGGCCAGGAGAAGAGCA
GTGATTGAGGTGCAGACCCTCATCACGTACCTGGACCTGAAGGAGGCCCTCGAGAAGAGGAAGC
TGTTCCCGTGTGAGGAGACCCCCCCACATAAGGCTGTGTGGAATGTCCTTGGAAACCTGTCAGA
GATCCAGGGTGAAGTCCTCTCCTTTGGTGGGAACCGAACTGATAAGAACTACATTCGTCTGGAG
GAGCTACTGACCAAACAGTTGCTGACTCTGGATGCTGTTGACCCACTGGGAGAAGAGAAGTGTA
AGGCTGCCAGGAAGCAGGCCGTGAAGCTGGCCCAGAACATCCTCAGCTACCTTGACATGAAGTC
TGATGAGTGGGAGTACTGACGGACCGCTGATCCTGCCGCTTTGCACTTTCTCTCCTCTGGAGAG
CTTTCCGCTCATGGAGCCTAAATGTAATGTCTATGTGCATAGTCAATCTCAGTATTTATGATTT
AATCAAATTATATTCAGTATTTCTGCTGCTTTTGATGTTGCAAAACGAATATCATTATAGCACA
TTAACTTTTCCATCTGGCTCATTATCCTTACAATGTGTGCTTTGTGTTTATTTTGTGTGTTTTT
AATGGGAACATGAAAAGGGCAGCATTCCTAAGTTTTAAATGGGTTGTGCAAGCATTAAATGCTT
GAGAGTCTAGAAACAGATCAAACTTTTCTAACTCTGGCCAAATTAAGAGGAGGAGGAAATTCTG
GGGTTGACTAAAGTCCAAGCAAACAAACATACAGAGATGCTTTATTCTGCTAAAAAGAGCTGGG
ACTTTAAAGTCAGAAGGCCGGATGGGTCCTGCCTAATTTTAATGGGTGGGGTTTTTGTTTGGAT
GGTCTGTTTTATCATAAACATTTTTGCTTGAAAAAAAAAACTGTTCCCCTGTGCTCTTCATTCT
AGAGGGGGGATCTTGTGTACAGCACACACACAATGAATGGAGCCTAACAGCCCAATGGAAACCA
CACTGAGGAAGGGAAGGAACATCACCTATTCAGTACCTTCCAGCTATTTTTGCTTGTGTGATCT
CGACTTAAAACTCTCCTTATTAGTTACTAAGGATAGGGCCATTTCAATGAAGCCAGTGCACCAA
AGAGGACAAGGCCATCGCCGTCTGCCTGTAACCGCAGGATGAAAGGTATAGTGTCCGATGTCCG
GTCACTGCAGAGCCAGCAGGGGCATGATAGCGTAGATGAGACGGATTCCTCTGTCAGTCACAGC
CGTAAAACAGACACACCTGTTAAACATAACATTACTCACACCGTAATATGAAACACTTCTGTAA
ATCCAGAGGGACTGGTCTCTGCGGCCATGAGACAAAGTTAACTGCACCTTAAATACCACCTGTA
CGTACTTGGAGTGGGTCTGGGCGCCTGTGATGCCATCATTAGAACCTGTCAGTTATGTAGGGGG
CTTTATTATTCATTTTACCCTCCCATGTGCTCCTGTGAATGTTTTCTAAGTAGCCAACGCTTTA
TGGCTGTCTATTAATGCAAGCAAAAGAACTCCCCAAACTTGTGCAGCGCTTTGATAACGCAGGC
CCCAGCATAACAGACCCCACCCCATGTTCCCATTTCTTTACATGATCCTGTGAGAGCTGACCTT
TTCAACTCTGAAAAACTGTGGGTTGTTTATTTTTTGTAAAAAATTCTCTTTAAACAGCTAAAAG
TATGGCAGGCGAATGGATTAGCTTTACGTACCGAAAGTGATAAGCACAAAGCCCTAAGCTCGTG
TGCACCATCTCTTCAAAAGCCCTTTACAGCTTTCCTACTGGGAATGTTCTAGAACACTGGGTCC
TGTGGGCTTGTGGCAGCGAGCTGTCCCCACTGCTGTCCCTGGAATTCTCAGTTTGGTCAGAGCT
GCCTGCTGCGACTTGTGTGTCCTAGCCTTAGAATGCTCAAGTCTTAAGTCACTTTCTGTGTATC
TGTCACCTGGTTACTAATTCTTTAGCTTCATTTTGAGAGTCAGCCTCTCTCTCTCTCAAGAGTA
TCCATTGTTCCGTTGAGGAAGATATTTGTCTCTCTAAAGTGATTTTCCTGTCACCTGCCAGGAC
ACCCCACGCTGCTGAGCTTGGAGCCTCGCTTAACGCTGGAGGCTTTCCCCAGGCCACAGGGTTT
TGCACGCGAATCCTCTGGGGCTTGGAGGTGGGCACATGAGTTTGTGTGGCTGTTGGGGTAGGCG
TTGTCTCCGTTACAGCTCCTTGGACCCAGTTGTTTCATAAAGAATAAGCAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001008526	(Get FASTA)	NCBI Sequence Viewer
	XP_006240663	(Get FASTA)	NCBI Sequence Viewer
	XP_006240664	(Get FASTA)	NCBI Sequence Viewer
	XP_006240665	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH88418	(Get FASTA)	NCBI Sequence Viewer
	AAR13081	(Get FASTA)	NCBI Sequence Viewer
	EDL97454	(Get FASTA)	NCBI Sequence Viewer
	Q5QJC9	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001008526 ⟸ NM_001008526

- UniProtKB:

Q5QJC9 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MDMGNQHPSISRLQEIQREVKSIEQQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDI
QQARKRAAQDTERLLKELEQNANHPHRIEIKNIFQEAQALVKEKTVPFYSGSNCVTSEFEEAIQ
DIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCVRKQPSLPLSEDVHPSVAKINSVMCE
VNKARGTLIALLMGVDSSETCRHLSCVLSGLMADLDALDVCGRTEIRNYRREVVEDINKLLKYL
DLEEEADNTHAFDLGQNHSIIKIENVLKRMREMKNELLQAQSPPELYLRSKTELQGLIGQLDEV
SLEKNPCIREARRRAVIEVQTLITYLDLKEALEKRKLFPCEETPPHKAVWNVLGNLSEIQGEVL
SFGGNRTDKNYIRLEELLTKQLLTLDAVDPLGEEKCKAARKQAVKLAQNILSYLDMKSDEWEY

hide sequence

RefSeq Acc Id:	XP_006240663 ⟸ XM_006240601
- Peptide Label:	isoform X1
- UniProtKB:	Q5QJC9 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDMGNQHPSISRLQEIQREVKSIEQQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDI QQARKRAAQDTERLLKELEQNANHPHRIEIKNIFQEAQALVKEKTVPFYSGSNCVTSEFEEAIQ DIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCVRKQPSLPLSEDVHPSVAKINSVMCE VNKARGTLIALLMGVDSSETCRHLSCVLSGLMADLDALDVCGRTEIRNYRREVVEDINKLLKYL DLEEEADNTHAFDLGQNHSIIKIENVLKRMREMKNELLQAQSPPELYLRSKTELQGLIGQLDEV SLEKNPCIREARRRAVIEVQTLITYLDLKEALEKRKLFPCEETPPHKAVWNVLGNLSEIQGEVL SFGGNRTDKNYIRLEELLTKQLLTLDAVDPLGEEKCKAARKQAVKLAQNILSYLDMKSDEWEY hide sequence

RefSeq Acc Id:	XP_006240664 ⟸ XM_006240602
- Peptide Label:	isoform X1
- UniProtKB:	Q5QJC9 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDMGNQHPSISRLQEIQREVKSIEQQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDI QQARKRAAQDTERLLKELEQNANHPHRIEIKNIFQEAQALVKEKTVPFYSGSNCVTSEFEEAIQ DIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCVRKQPSLPLSEDVHPSVAKINSVMCE VNKARGTLIALLMGVDSSETCRHLSCVLSGLMADLDALDVCGRTEIRNYRREVVEDINKLLKYL DLEEEADNTHAFDLGQNHSIIKIENVLKRMREMKNELLQAQSPPELYLRSKTELQGLIGQLDEV SLEKNPCIREARRRAVIEVQTLITYLDLKEALEKRKLFPCEETPPHKAVWNVLGNLSEIQGEVL SFGGNRTDKNYIRLEELLTKQLLTLDAVDPLGEEKCKAARKQAVKLAQNILSYLDMKSDEWEY hide sequence

RefSeq Acc Id:	XP_006240665 ⟸ XM_006240603
- Peptide Label:	isoform X1
- UniProtKB:	Q5QJC9 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MDMGNQHPSISRLQEIQREVKSIEQQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKGDI QQARKRAAQDTERLLKELEQNANHPHRIEIKNIFQEAQALVKEKTVPFYSGSNCVTSEFEEAIQ DIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCVRKQPSLPLSEDVHPSVAKINSVMCE VNKARGTLIALLMGVDSSETCRHLSCVLSGLMADLDALDVCGRTEIRNYRREVVEDINKLLKYL DLEEEADNTHAFDLGQNHSIIKIENVLKRMREMKNELLQAQSPPELYLRSKTELQGLIGQLDEV SLEKNPCIREARRRAVIEVQTLITYLDLKEALEKRKLFPCEETPPHKAVWNVLGNLSEIQGEVL SFGGNRTDKNYIRLEELLTKQLLTLDAVDPLGEEKCKAARKQAVKLAQNILSYLDMKSDEWEY hide sequence

RefSeq Acc Id:

ENSRNOP00000071757 ⟸ ENSRNOT00000085594

RefSeq Acc Id:

ENSRNOP00000015333 ⟸ ENSRNOT00000015333

Protein Domains

BAG

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5QJC9-F1-model_v2	AlphaFold	Q5QJC9	1-447	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694843

Promoter ID:

EPDNEW_R5367

Type:

initiation region

Name:

Bag5l1_1

Description:

BCL2-associated athanogene 5-like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	136,185,690 - 136,185,750	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310847	AgrOrtholog
BioCyc Gene	G2FUF-35829	BioCyc
Ensembl Genes	ENSRNOG00000011527	Ensembl
	ENSRNOG00000058841	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000071757	ENTREZGENE
	ENSRNOP00000071757.1	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000085594	ENTREZGENE
	ENSRNOT00000085594.2	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.58.120	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7123242	IMAGE-MGC_LOAD
InterPro	BAG_chaperone_regulator	UniProtKB/Swiss-Prot
	BAG_dom_sf	UniProtKB/Swiss-Prot
	BAG_domain	UniProtKB/Swiss-Prot
KEGG Report	rno:366734	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:95040	IMAGE-MGC_LOAD
NCBI Gene	366734	ENTREZGENE
PANTHER	BAG FAMILY MOLECULAR CHAPERONE REGULATOR 5	UniProtKB/Swiss-Prot
	PTHR12329	UniProtKB/Swiss-Prot
Pfam	BAG	UniProtKB/Swiss-Prot
PhenoGen	Bag5	PhenoGen
PROSITE	BAG	UniProtKB/Swiss-Prot
SMART	BAG	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF63491	UniProtKB/Swiss-Prot
UniProt	BAG5_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-06-01	Bag5	BAG cochaperone 5	Bag5l1	BCL2-associated athanogene 5-like 1	Data Merged	737654	PROVISIONAL
2019-11-11	Bag5	BAG cochaperone 5	Bag5	BCL2-associated athanogene 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-08-25	Bag5l1	BCL2-associated athanogene 5-like 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-12-06	Bag5	BCL2-associated athanogene 5	Bag5_predicted	BCL2-associated athanogene 5 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Bag5_predicted	BCL2-associated athanogene 5 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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