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Gene: Pcif1 (phosphorylated CTD interacting factor 1) Rattus norvegicus
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Symbol: Pcif1
Name: phosphorylated CTD interacting factor 1
RGD ID: 1310800
Description: Predicted to have RNA polymerase II C-terminal domain binding activity; S-adenosyl-L-methionine binding activity; and mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity. Predicted to be involved in mRNA methylation; negative regulation of phosphatase activity; and regulation of translation. Predicted to localize to intercellular bridge; microtubule cytoskeleton; and nucleoplasm. Orthologous to human PCIF1 (phosphorylated CTD interacting factor 1); INTERACTS WITH cadmium dichloride; endosulfan; vinclozolin.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC362269; PDX1 C-terminal inhibiting factor 1; phosphorylated CTD-interacting factor 1; RGD1310800; similar to RIKEN cDNA F730014I05
Orthologs:
Homo sapiens (human) : PCIF1 (phosphorylated CTD interacting factor 1)  HGNC  Alliance
Mus musculus (house mouse) : Pcif1 (phosphorylated CTD interacting factor 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pcif1 (phosphorylated CTD interacting factor 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PCIF1 (phosphorylated CTD interacting factor 1)
Canis lupus familiaris (dog) : PCIF1 (phosphorylated CTD interacting factor 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pcif1 (phosphorylated CTD interacting factor 1)
Sus scrofa (pig) : PCIF1 (phosphorylated CTD interacting factor 1)
Chlorocebus sabaeus (African green monkey) : PCIF1 (phosphorylated CTD interacting factor 1)
Heterocephalus glaber (naked mole-rat) : Pcif1 (phosphorylated CTD interacting factor 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03161,343,883 - 161,356,815 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3161,343,883 - 161,356,815 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03167,528,503 - 167,541,435 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,914,227 - 155,927,159 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13155,821,464 - 155,833,176 (+)NCBI
Celera3152,219,717 - 152,232,649 (+)NCBICelera
Cytogenetic Map3q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Pcif1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310800
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-09-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.