Asb1 (ankyrin repeat and SOCS box-containing 1) - Rat Genome Database

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Gene: Asb1 (ankyrin repeat and SOCS box-containing 1) Rattus norvegicus
Analyze
Symbol: Asb1
Name: ankyrin repeat and SOCS box-containing 1
RGD ID: 1310760
Description: Predicted to contribute to ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within male genitalia development. Predicted to be part of ubiquitin ligase complex. Orthologous to human ASB1 (ankyrin repeat and SOCS box containing 1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ankyrin repeat and SOCS box protein 1; ankyrin repeat and SOCS box-containing protein 1; LOC316628
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8999,566,852 - 99,588,321 (+)NCBIGRCr8
mRatBN7.2992,120,332 - 92,140,790 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl992,120,306 - 92,136,376 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9100,547,118 - 100,562,967 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09105,682,879 - 105,698,728 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09104,046,687 - 104,062,664 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0998,668,231 - 98,689,471 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,668,231 - 98,684,900 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0998,344,295 - 98,364,916 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4990,758,693 - 90,774,541 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1990,963,353 - 90,979,013 (+)NCBI
Celera989,661,506 - 89,676,975 (+)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11509662   PMID:12477932   PMID:16325183   PMID:16751776   PMID:16778019  


Genomics

Comparative Map Data
Asb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8999,566,852 - 99,588,321 (+)NCBIGRCr8
mRatBN7.2992,120,332 - 92,140,790 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl992,120,306 - 92,136,376 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9100,547,118 - 100,562,967 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09105,682,879 - 105,698,728 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09104,046,687 - 104,062,664 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0998,668,231 - 98,689,471 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl998,668,231 - 98,684,900 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0998,344,295 - 98,364,916 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4990,758,693 - 90,774,541 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1990,963,353 - 90,979,013 (+)NCBI
Celera989,661,506 - 89,676,975 (+)NCBICelera
Cytogenetic Map9q36NCBI
ASB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382238,426,927 - 238,452,250 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2238,426,742 - 238,452,250 (+)EnsemblGRCh38hg38GRCh38
GRCh372239,335,568 - 239,360,891 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362239,000,365 - 239,025,630 (+)NCBINCBI36Build 36hg18NCBI36
Build 342239,117,625 - 239,142,890NCBI
Celera2233,048,109 - 233,073,377 (+)NCBICelera
Cytogenetic Map2q37.3NCBI
HuRef2231,126,671 - 231,151,945 (+)NCBIHuRef
CHM1_12239,341,851 - 239,367,116 (+)NCBICHM1_1
T2T-CHM13v2.02238,917,065 - 238,942,362 (+)NCBIT2T-CHM13v2.0
Asb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39191,467,725 - 91,487,312 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl191,468,266 - 91,487,311 (+)EnsemblGRCm39 Ensembl
GRCm38191,540,001 - 91,559,590 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl191,540,544 - 91,559,589 (+)EnsemblGRCm38mm10GRCm38
MGSCv37193,437,142 - 93,456,167 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36193,370,971 - 93,390,034 (+)NCBIMGSCv36mm8
Celera194,477,061 - 94,496,069 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map146.19NCBI
Asb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555422,243,381 - 2,255,747 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555422,243,381 - 2,255,747 (-)NCBIChiLan1.0ChiLan1.0
ASB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213141,066,796 - 141,093,593 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B141,083,318 - 141,108,561 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B125,664,934 - 125,690,175 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B244,508,295 - 244,533,471 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B244,508,295 - 244,527,771 (+)Ensemblpanpan1.1panPan2
ASB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2549,349,423 - 49,370,853 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02549,239,887 - 49,261,315 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2549,217,966 - 49,255,992 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12549,114,892 - 49,211,423 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02548,903,641 - 48,925,039 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02549,135,809 - 49,157,238 (+)NCBIUU_Cfam_GSD_1.0
Asb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303190,845,532 - 190,860,128 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493652584,907 - 97,210 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493652579,568 - 94,147 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15137,931,774 - 137,952,046 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115137,931,419 - 137,952,050 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215152,382,932 - 152,403,282 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110124,456,993 - 124,479,904 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10124,456,492 - 124,478,600 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604074,937,061 - 74,964,236 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Asb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248473,477,516 - 3,491,451 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248473,477,499 - 3,489,427 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Asb1
73 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:40
Interacting mature miRNAs:48
Transcripts:ENSRNOT00000027528
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat

Markers in Region
RH138716  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2992,136,116 - 92,136,289 (+)MAPPERmRatBN7.2
Rnor_6.0998,684,798 - 98,684,970NCBIRnor6.0
Rnor_5.0998,360,243 - 98,360,415UniSTSRnor5.0
RGSC_v3.4990,774,439 - 90,774,611UniSTSRGSC3.4
Celera989,676,873 - 89,677,045UniSTS
RH 3.4 Map9785.69UniSTS
Cytogenetic Map9q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 2 9 2 66 7
Low 3 43 55 39 10 39 8 11 8 35 34 11 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC141966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC168978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ608371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ611350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ615281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ620355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ622435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ623565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ624427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ731851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ734129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ744905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ745985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ755985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ762906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000027528   ⟹   ENSRNOP00000027528
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl992,120,306 - 92,136,219 (+)Ensembl
Rnor_6.0 Ensembl998,668,231 - 98,684,900 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094785   ⟹   ENSRNOP00000084202
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl992,121,278 - 92,136,219 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118191   ⟹   ENSRNOP00000097757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl992,121,278 - 92,136,376 (+)Ensembl
RefSeq Acc Id: NM_001108232   ⟹   NP_001101702
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,567,901 - 99,583,750 (+)NCBI
mRatBN7.2992,120,368 - 92,136,219 (+)NCBI
Rnor_6.0998,668,231 - 98,684,900 (+)NCBI
Rnor_5.0998,344,295 - 98,364,916 (+)NCBI
RGSC_v3.4990,758,693 - 90,774,541 (+)RGD
Celera989,661,506 - 89,676,975 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245409   ⟹   XP_006245471
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,568,765 - 99,588,321 (+)NCBI
mRatBN7.2992,121,225 - 92,140,790 (+)NCBI
Rnor_6.0998,669,016 - 98,689,471 (+)NCBI
Rnor_5.0998,344,295 - 98,364,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006245410   ⟹   XP_006245472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,568,718 - 99,588,321 (+)NCBI
mRatBN7.2992,121,237 - 92,140,790 (+)NCBI
Rnor_6.0998,669,017 - 98,689,471 (+)NCBI
Rnor_5.0998,344,295 - 98,364,916 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083762   ⟹   XP_038939690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,566,852 - 99,588,321 (+)NCBI
mRatBN7.2992,121,740 - 92,140,790 (+)NCBI
RefSeq Acc Id: XM_039083763   ⟹   XP_038939691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,566,852 - 99,588,321 (+)NCBI
mRatBN7.2992,120,332 - 92,140,790 (+)NCBI
RefSeq Acc Id: XM_063267321   ⟹   XP_063123391
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,569,126 - 99,588,321 (+)NCBI
RefSeq Acc Id: XM_063267322   ⟹   XP_063123392
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,566,852 - 99,588,321 (+)NCBI
RefSeq Acc Id: XM_063267323   ⟹   XP_063123393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,568,729 - 99,588,321 (+)NCBI
RefSeq Acc Id: XM_063267324   ⟹   XP_063123394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8999,568,732 - 99,588,321 (+)NCBI
RefSeq Acc Id: NP_001101702   ⟸   NM_001108232
- UniProtKB: B5DF97 (UniProtKB/TrEMBL),   F7F1S8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245472   ⟸   XM_006245410
- Peptide Label: isoform X4
- UniProtKB: F7F1S8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006245471   ⟸   XM_006245409
- Peptide Label: isoform X2
- UniProtKB: A6JQT2 (UniProtKB/TrEMBL),   F7F1S8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000027528   ⟸   ENSRNOT00000027528
RefSeq Acc Id: XP_038939691   ⟸   XM_039083763
- Peptide Label: isoform X3
- UniProtKB: F7F1S8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038939690   ⟸   XM_039083762
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZYZ6 (UniProtKB/TrEMBL),   F7F1S8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000084202   ⟸   ENSRNOT00000094785
RefSeq Acc Id: ENSRNOP00000097757   ⟸   ENSRNOT00000118191
RefSeq Acc Id: XP_063123392   ⟸   XM_063267322
- Peptide Label: isoform X6
- UniProtKB: A6JQT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123393   ⟸   XM_063267323
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063123394   ⟸   XM_063267324
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AUV4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123391   ⟸   XM_063267321
- Peptide Label: isoform X5
Protein Domains
SOCS box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DF97-F1-model_v2 AlphaFold B5DF97 1-335 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696864
Promoter ID:EPDNEW_R7388
Type:initiation region
Name:Asb1_1
Description:ankyrin repeat and SOCS box-containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0998,668,173 - 98,668,233EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310760 AgrOrtholog
BioCyc Gene G2FUF-26709 BioCyc
Ensembl Genes ENSRNOG00000020322 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000027528 ENTREZGENE
  ENSRNOT00000027528.6 UniProtKB/TrEMBL
  ENSRNOT00000094785.1 UniProtKB/TrEMBL
  ENSRNOT00000118191.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  SOCS box UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  ASB1_SOCS UniProtKB/TrEMBL
  SOCS_box_dom_like UniProtKB/TrEMBL
  SOCS_C UniProtKB/TrEMBL
KEGG Report rno:316628 UniProtKB/TrEMBL
NCBI Gene 316628 ENTREZGENE
PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 1 UniProtKB/TrEMBL
  ANKYRIN REPEAT CONTAINING UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
PhenoGen Asb1 PhenoGen
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  SOCS UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020322 RatGTEx
SMART ANK UniProtKB/TrEMBL
  SOCS_box UniProtKB/TrEMBL
Superfamily-SCOP ANK UniProtKB/TrEMBL
  SSF158235 UniProtKB/TrEMBL
UniProt A0A8I5ZYZ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AUV4 ENTREZGENE, UniProtKB/TrEMBL
  A6JQT1 ENTREZGENE, UniProtKB/TrEMBL
  A6JQT2 ENTREZGENE, UniProtKB/TrEMBL
  B5DF97 ENTREZGENE, UniProtKB/TrEMBL
  F7F1S8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-25 Asb1  ankyrin repeat and SOCS box-containing 1  Asb1  ankyrin repeat and SOCS box-containing protein 1   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Asb1  ankyrin repeat and SOCS box-containing protein 1   Asb1_predicted  ankyrin repeat and SOCS box-containing protein 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Asb1_predicted  ankyrin repeat and SOCS box-containing protein 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED