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Gene: Syndig1 (synapse differentiation inducing 1) Rattus norvegicus

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Symbol:

Syndig1

Name:

synapse differentiation inducing 1

RGD ID:

1310753

Description:

Predicted to enable glutamate receptor binding activity and protein homodimerization activity. Involved in positive regulation of synapse assembly; regulation of postsynapse assembly; and synaptic vesicle clustering. Located in cell body; dendrite; and excitatory synapse. Is active in glutamatergic synapse and postsynaptic density membrane. Orthologous to human SYNDIG1 (synapse differentiation inducing 1); INTERACTS WITH acrylamide; bisphenol A; Cuprizon.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

dispanin subfamily C member 2; DSPC2; LOC103691925; LOC362235; RGD1310753; similar to chromosome 20 open reading frame 39; synapse differentiation-inducing gene protein 1; Tmem90b; transmembrane protein 90B; uncharacterized LOC103691925

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Allele / Splice:

Syndig1^{Tn(sb-T2/Bart3)2.171Mcwi}

Genetic Models:

F344-Syndig1^{Tn(sb-T2/Bart3)2.171Mcwi}

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	158,491,474 - 158,695,174 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	158,491,996 - 158,658,652 (+)	Ensembl				GRCr8
mRatBN7.2	3	138,030,995 - 138,234,646 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	138,031,769 - 138,198,122 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	141,965,844 - 142,132,031 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	150,549,574 - 150,715,761 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	148,264,722 - 148,431,040 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	145,031,427 - 145,199,273 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	145,032,200 - 145,199,356 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	151,405,855 - 151,571,801 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	139,434,170 - 139,834,916 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	136,716,149 - 136,879,658 (+)	NCBI		Celera
RGSC_v3.1	3	139,339,742 - 139,740,488 (+)	NCBI
Cytogenetic Map	3	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Cuprizon (EXP)

D-glucose (ISO)

diazinon (ISO)

doxorubicin (ISO)

ethanol (ISO)

fructose (ISO)

fulvestrant (ISO)

furan (EXP)

glucose (ISO)

herbicide (ISO)

iron dichloride (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

Monobutylphthalate (EXP)

okadaic acid (ISO)

paraquat (EXP)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

sunitinib (ISO)

titanium dioxide (EXP,ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

intracellular protein transport (IEA,ISO,ISS)

positive regulation of synapse assembly (IBA,IEA,IMP,ISO)

regulation of postsynapse assembly (EXP,IDA,IMP)

synaptic vesicle clustering (IBA,IDA)

Cellular Component

cell body (IDA)

cell projection (IEA)

dendrite (IEA)

dendritic shaft (IDA)

dendritic spine (IDA,IEA)

early endosome membrane (IEA,ISO,ISS)

endosome (IEA)

excitatory synapse (IBA,IDA)

glutamatergic synapse (EXP,IDA,IEP,IMP)

Golgi membrane (ISO)

membrane (IEA)

plasma membrane (IEA,ISO,ISS)

postsynaptic density (IEA,ISO,ISS)

postsynaptic density membrane (IBA,IDA,IEA,IEP,ISO)

postsynaptic membrane (IEA)

synapse (IEA)

synaptic vesicle membrane (IBA,IEA,ISO)

Molecular Function

glutamate receptor binding (IEA,ISO,ISS)

protein binding (ISO)

protein homodimerization activity (IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	SynDIG1: an activity-regulated, AMPA- receptor-interacting transmembrane protein that regulates excitatory synapse development.	Kalashnikova E, etal., Neuron. 2010 Jan 14;65(1):80-93. doi: 10.1016/j.neuron.2009.12.021.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:21878521	PMID:23785483	PMID:29490264

Genomics

Comparative Map Data

Syndig1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	158,491,474 - 158,695,174 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	158,491,996 - 158,658,652 (+)	Ensembl				GRCr8
mRatBN7.2	3	138,030,995 - 138,234,646 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	138,031,769 - 138,198,122 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	141,965,844 - 142,132,031 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	150,549,574 - 150,715,761 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	148,264,722 - 148,431,040 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	145,031,427 - 145,199,273 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	145,032,200 - 145,199,356 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	151,405,855 - 151,571,801 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	139,434,170 - 139,834,916 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	136,716,149 - 136,879,658 (+)	NCBI		Celera
RGSC_v3.1	3	139,339,742 - 139,740,488 (+)	NCBI
Cytogenetic Map	3	q41	NCBI

SYNDIG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	24,469,629 - 24,666,616 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	24,469,629 - 24,666,616 (+)	Ensembl			hg38	GRCh38
GRCh37	20	24,450,265 - 24,647,252 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	24,397,835 - 24,595,167 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	24,397,834 - 24,595,167	NCBI
Celera	20	24,524,151 - 24,721,487 (+)	NCBI		Celera
Cytogenetic Map	20	p11.21	NCBI
HuRef	20	24,405,607 - 24,604,629 (+)	NCBI		HuRef
CHM1_1	20	24,450,308 - 24,648,495 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	24,531,610 - 24,729,659 (+)	NCBI		T2T-CHM13v2.0

Syndig1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	149,672,703 - 149,846,312 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	149,671,131 - 149,846,312 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	149,830,783 - 150,004,392 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	149,829,211 - 150,004,392 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	149,656,519 - 149,830,128 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	149,522,238 - 149,695,833 (+)	NCBI		MGSCv36	mm8
Celera	2	151,074,984 - 151,248,632 (+)	NCBI		Celera
Cytogenetic Map	2	G3	NCBI
cM Map	2	73.8	NCBI

Syndig1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	30,909,014 - 31,005,533 (+)	Ensembl
ChiLan1.0	NW_004955415	30,909,654 - 31,005,421 (+)	NCBI	ChiLan1.0	ChiLan1.0

SYNDIG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	25,333,573 - 25,559,619 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	25,330,408 - 25,563,465 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	24,402,471 - 24,629,365 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	24,751,062 - 24,947,280 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	24,825,380 - 24,947,370 (+)	Ensembl			panPan2	panpan1.1

SYNDIG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	759,787 - 865,659 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	685,782 - 865,359 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	707,338 - 896,758 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	919,502 - 1,109,045 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	918,789 - 1,108,951 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	819,974 - 925,587 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	859,317 - 1,048,759 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	848,398 - 1,037,785 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Syndig1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	147,745,538 - 147,938,240 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936620	1,165,709 - 1,359,179 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936620	1,165,312 - 1,359,127 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYNDIG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	30,638,039 - 30,709,382 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	30,621,622 - 30,709,387 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	34,684,454 - 34,720,447 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYNDIG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	53,532,455 - 53,682,063 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	53,533,174 - 53,682,056 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	92,177,743 - 92,250,156 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Syndig1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624939	560,106 - 661,570 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624939	560,192 - 698,100 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Syndig1
467 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	112
Count of miRNA genes:	95
Interacting mature miRNAs:	101
Transcripts:	ENSRNOT00000068210
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12879876	Bw182	Body weight QTL 182		0.003	body mass (VT:0001259)	body weight (CMO:0000012)	3	141555229	186555229	Rat
2301411	Bp320	Blood pressure QTL 320		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	141555229	186555229	Rat
1582233	Insul10	Insulin level QTL 10	5.4	0.0015	blood insulin amount (VT:0001560)	serum insulin level times blood glucose level (CMO:0002040)	3	133259579	178259579	Rat
12879872	Cm97	Cardiac mass QTL 97		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	141555229	186555229	Rat
12879873	Cm96	Cardiac mass QTL 96		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	141555229	186555229	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	129154923	182114333	Rat
12879874	Cm98	Cardiac mass QTL 98		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	141555229	186555229	Rat
12879875	Kidm64	Kidney mass QTL 64		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	141555229	186555229	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	133134628	178134628	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1300173	Rf11	Renal function QTL 11	3.38		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	141508991	166376254	Rat
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
10755461	Coatc16	Coat color QTL 16			coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	3	142898802	187898802	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	117537367	162537367	Rat
2303620	Vencon4	Ventilatory control QTL 4	3.9		respiration trait (VT:0001943)	tidal volume (CMO:0000222)	3	125116475	170116475	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1576306	Schws3	Schwannoma susceptibility QTL 3		0.001	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	3	139299381	184299381	Rat
5686842	Rf59	Renal function QTL 59			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	3	122395989	167395989	Rat
1300159	Kidm4	Kidney mass QTL 4	3.83		kidney mass (VT:0002707)	right kidney wet weight to body weight ratio (CMO:0001953)	3	141508991	177728348	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	131036586	176036586	Rat
631673	Iddm13	Insulin dependent diabetes mellitus QTL 13	1.3	0.663	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	3	137114333	182114333	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	131036586	176036586	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
12879871	Am7	Aortic mass QTL 7		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	141555229	186555229	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	116188400	161188400	Rat

Genetic Models

This gene Syndig1 is modified in the following models/strains:

F344-Syndig1^{Tn(sb-T2/Bart3)2.171Mcwi}

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
14	12	66	150	69	68	37	47	37	6	283	146	11	124	78	92	31	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105478	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105480	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039105481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005501940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC092131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000068210 ⟹ ENSRNOP00000060788

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	158,491,996 - 158,658,652 (+)	Ensembl
mRatBN7.2 Ensembl	3	138,031,769 - 138,198,122 (+)	Ensembl
Rnor_6.0 Ensembl	3	145,032,200 - 145,199,356 (+)	Ensembl

RefSeq Acc Id:

NM_001025020 ⟹ NP_001020191

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	158,492,290 - 158,658,653 (+)	NCBI
mRatBN7.2	3	138,031,769 - 138,198,123 (+)	NCBI
Rnor_6.0	3	145,032,177 - 145,199,196 (+)	NCBI
Rnor_5.0	3	151,405,855 - 151,571,801 (+)	NCBI
RGSC_v3.4	3	139,434,170 - 139,834,916 (+)	RGD
Celera	3	136,716,149 - 136,879,658 (+)	RGD

Sequence:

show sequence

GCTCCGCGCCCCGCACGCTCCCTGGCTCTCGAGACGCGCGGGCGACAGCCTGGGCGCACCAGCC
GGGTCACCTTGTCCCAGAGGTTCTGGTGGCTTGATGCCTGGCCACTTCCTTCTTTCACCTGTTC
GTGAGAGATAATCTGGACTGCCTATTAAGACCCTTTTACAGGGAAATGGGTCCTATGGGGCTTG
TGTGACCTGTGAATACAGCCTGCTAGCCTGACGCCAAGCAGGGAGGGAGTCTATCATGGATGGC
ATCGTTGAGCAGAAGAGTGTTCTGGTACACAGTAAGATCGGTGATGCTGGCAAAAGGAATGGCT
TAATTAACACCAGAAACTTCATGGCTGAGAGCAGGGATGGTCTGGTGTCTGTTTACCCAGCACC
GCAGTACCAGAGCCACAGGCTAGTGGCCAGTGCGGCACCAGGCAGCCTGGAAGGAGGCAGAAGT
GATCCTGTGCAGCAGCTGCTGGACCCAAACACACTGCAGCAGTCCGTGGACTCCCACTATCGTC
CCAACATCATTCTATACTCAGATGGTGTGCTCCGATCCTGGGGGGATGGTGTAGCCACTGACTG
CTGTGAGACCACCTTCATTGAGGACCGGTCACCCACCAAAGACAGCCTGGAGTACCCCGATGGG
AAATTCATCGACCTCTCAGGGGATGACATCAAAATCCACACCCTGTCTTATGATGTGGAGGAAG
AGGAGGAGTTACAGGAGCTGGAGAGTGACTACTCTAGCGACACAGAGAGTGAGGACAACTTCCT
CATGATGCCTCCACGGGATCACCTGGGACTCAGTGTCTTCTCCATGCTCTGCTGCTTCTGGCCT
TTGGGCATCGCGGCCTTCTACTTGTCCCATGAGACAAACAAAGCTGTGGCCAAAGGAGACTTCC
ATCAGGCCAGCACCAGCTCCCGGAGGGCCCTATTTCTGGCAGTGCTGTCCATTACGATTGGAAC
TGGCATCTATGTGGGTGTAGCTGTTGCCCTCATTGCCTACCTCTCCAAAAACAACCACCTGTGA
GCTTTCCAAAGGCTGGCATGAAGGAGGGGGAGCTGAGCCAGATGTATGAGGGCAGAGAAGAGAC
ATCTGTGTGTTACTGTACAGTACAAGGGATTGCCGGACAACTCCATGATGCCCTGGAATCTTCT
ACTCCTGGACTTCCTTTGTTTTTATCCTTCAACTTCATCTTCAGCACTGTGCAGAGCACCAGGC
AGCCAGGAATGCTGATTCTTCCTCATGGAAGTTCCAAAGATTCCATCCCAGTGGCTGCCCCTGG
ATAAAGTCTACTGGATGGATGACAAGCCAGCTCTGTAGCCTGCCAGTGCCTGGACTAACACCCC
ATTAGCAATATACAAACAGTCAAAATATGTTTATTTTTTATGGAATATGGTGCAATAGGCAGAA
TGCAGAAGACATGTCATCACTAGCTTGTGGCCCGCTTAAATTCTCTGTGTGTACCCCATCTTTG
TGGCTTCCTTGTCAGAAATAAGTGGGGCTGAGAAAGAAAGGAAAGCAACTGCTGGGAGATCTTC
TGTCTCTCTGTCCACAGATGGATCCTGTCTGAGAATGCAGAATTAGAGGAGCATAATGCCTACC
CTGGCCTTGCTCAGTCCCAGCACGCTGCCTCAGCTTGGAGCATCAGGCTTCTTGCAGATACCCA
GCAATACACAGTTCTGGGGCCTCACTAATCTTAAAGGAGAGGAAACCACAGCTCCTCTCAAAAA
CAAACCCAGTGTTTTCCCCGGGAGCCTGAGGGAAAGGAACTGTGAAGACACACCAGGTGTTTAA
CTCCTGGATGTTCATCCTGGTCATGAGCTTCAATGTTGGAGATCCCGGAAATGAGATGGGCCTT
ATTCTGTCCACTAAATGAATGGCTATTTTCTTGTCATTTTTTAAGTGCAACTCTTGCTTCATGC
TGCTTCAGTTGCCAGATGAATGCTGAGAAATAAGTAATCACAGATGTTTTAATACCATGTCATT
GCTGTTTTACGAGTGTTCATTATTTAACAAAAATTATCTTTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

hide sequence

RefSeq Acc Id:

XM_017591912 ⟹ XP_017447401

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	158,492,626 - 158,658,653 (+)	NCBI
mRatBN7.2	3	138,032,091 - 138,198,128 (+)	NCBI
Rnor_6.0	3	145,032,420 - 145,199,273 (+)	NCBI

Sequence:

show sequence

CCTAGAGGGTAGCAGTGGCCGGGCCAGGGAGACACAGAGTCGCCCCCGAGAGAGGGGAGATGGC
GCCTGGCTGGGAAGATGCAGAGAGGACAGGAACCCGTACTATTGGCCCAGGCTGCAACTTGGCG
CCTCGCCACCTTGGGTACACAGGCAGCCTGAAGGGGCTGCTGTGCGACGTCGGTTAGAGCTAGT
GAGTCTGTGTCCTGAGTTCGGCGGAGCCAGGCTGCCCGGGGCCCGGCCGGAGTACGGAAAGACC
TAAGTGATACAGACCAGTCCCTGGAGCTACCTAGCTGAGTCCAAGAAGGGCTGGCGATCAAGGC
ATCCGCGGAGGTGGCACTGAGTGAGGTTCTGGTGGCTTGATGCCTGGCCACTTCCTTCTTTCAC
CTGTTCGTGAGAGATAATCTGGACTGCCTATTAAGACCCTTTTACAGGGAAATGGGTCCTATGG
GGCTTGTGTGACCTGTGAATACAGCCTGCTAGCCTGACGCCAAGCAGGGAGGGAGTCTATCATG
GATGGCATCGTTGAGCAGAAGAGTGTTCTGGTACACAGTAAGATCGGTGATGCTGGCAAAAGGA
ATGGCTTAATTAACACCAGAAACTTCATGGCTGAGAGCAGGGATGGTCTGGTGTCTGTTTACCC
AGCACCGCAGTACCAGAGCCACAGGCTAGTGGCCAGTGCGGCACCAGGCAGCCTGGAAGGAGGC
AGAAGTGATCCTGTGCAGCAGCTGCTGGACCCAAACACACTGCAGCAGTCCGTGGACTCCCACT
ATCGTCCCAACATCATTCTATACTCAGATGGTGTGCTCCGATCCTGGGGGGATGGTGTAGCCAC
TGACTGCTGTGAGACCACCTTCATTGAGGACCGGTCACCCACCAAAGACAGCCTGGAGTACCCC
GATGGGAAATTCATCGACCTCTCAGGGGATGACATCAAAATCCACACCCTGTCTTATGATGTGG
AGGAAGAGGAGGAGTTACAGGAGCTGGAGAGTGACTACTCTAGCGACACAGAGAGTGAGGACAA
CTTCCTCATGATGCCTCCACGGGATCACCTGGGACTCAGTGTCTTCTCCATGCTCTGCTGCTTC
TGGCCTTTGGGCATCGCGGCCTTCTACTTGTCCCATGAGACAAACAAAGCTGTGGCCAAAGGAG
ACTTCCATCAGGCCAGCACCAGCTCCCGGAGGGCCCTATTTCTGGCAGTGCTGTCCATTACGAT
TGGAACTGGCATCTATGTGGGTGTAGCTGTTGCCCTCATTGCCTACCTCTCCAAAAACAACCAC
CTGTGAGCTTTCCAAAGGCTGGCATGAAGGAGGGGGAGCTGAGCCAGATGTATGAGGGCAGAGA
AGAGACATCTGTGTGTTACTGTACAGTACAAGGGATTGCCGGACAACTCCATGATGCCCTGGAA
TCTTCTACTCCTGGACTTCCTTTGTTTTTATCCTTCAACTTCATCTTCAGCACTGTGCAGAGCA
CCAGGCAGCCAGGAATGCTGATTCTTCCTCATGGAAGTTCCAAAGATTCCATCCCAGTGGCTGC
CCCTGGATAAAGTCTACTGGATGGATGACAAGCCAGCTCTGTAGCCTGCCAGTGCCTGGACTAA
CACCCCATTAGCAATATACAAACAGTCAAAATATGTTTATTTTTTATGGAATATGGTGCAATAG
GCAGAATGCAGAAGACATGTCATCACTAGCTTGTGGCCCGCTTAAATTCTCTGTGTGTACCCCA
TCTTTGTGGCTTCCTTGTCAGAAATAAGTGGGGCTGAGAAAGAAAGGAAAGCAACTGCTGGGAG
ATCTTCTGTCTCTCTGTCCACAGATGGATCCTGTCTGAGAATGCAGAATTAGAGGAGCATAATG
CCTACCCTGGCCTTGCTCAGTCCCAGCACGCTGCCTCAGCTTGGAGCATCAGGCTTCTTGCAGA
TACCCAGCAATACACAGTTCTGGGGCCTCACTAATCTTAAAGGAGAGGAAACCACAGCTCCTCT
CAAAAACAAACCCAGTGTTTTCCCCGGGAGCCTGAGGGAAAGGAACTGTGAAGACACACCAGGT
GTTTAACTCCTGGATGTTCATCCTGGTCATGAGCTTCAATGTTGGAGATCCCGGAAATGAGATG
GGCCTTATTCTGTCCACTAAATGAATGGCTATTTTCTTGTCATTTTTTAAGTGCAACTCTTGCT
TCATGCTGCTTCAGTTGCCAGATGAATGCTGAGAAATAAGTAATCACAGATGTTTTAATACCAT
GTCATTGCTGTTTTACGAGTGTTCATTATTTAACAAAAATTATCTTTTAGCTTGTTTGGTTATG
ACTTTTCTTTCTGATGAATGGTGATGTTTTGGCTCTGTTTTGATGATTTACTTCATGCTTTA

hide sequence

RefSeq Acc Id:

XM_017591913 ⟹ XP_017447402

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	158,492,626 - 158,658,653 (+)	NCBI
mRatBN7.2	3	138,032,091 - 138,198,128 (+)	NCBI
Rnor_6.0	3	145,032,420 - 145,199,273 (+)	NCBI

Sequence:

show sequence

CCTAGAGGGTAGCAGTGGCCGGGCCAGGGAGACACAGAGTCGCCCCCGAGAGAGGGGAGATGGC
GCCTGGCTGGGAAGATGCAGAGAGGACAGGAACCCGTACTATTGGCCCAGGCTGCAACTTGGCG
CCTCGCCACCTTGGGTACACAGGCAGCCTGAAGGGGCTGCTGTGCGACGTCGGTTAGAGCTAGT
GAGTCTGTGTCCTGAGTTCGGCGGAGCCAGGCTGCCCGGGGCCCGGCCGGAGTACGGAAAGACC
TAAGTGATACAGACCAGTCCCTGGAGCTACCTAGCTGAGTCCAAGAAGGGCTGGCGATCAAGGC
ATCCGCGGAGGTTCTGGTGGCTTGATGCCTGGCCACTTCCTTCTTTCACCTGTTCGTGAGAGAT
AATCTGGACTGCCTATTAAGACCCTTTTACAGGGAAATGGGTCCTATGGGGCTTGTGTGACCTG
TGAATACAGCCTGCTAGCCTGACGCCAAGCAGGGAGGGAGTCTATCATGGATGGCATCGTTGAG
CAGAAGAGTGTTCTGGTACACAGTAAGATCGGTGATGCTGGCAAAAGGAATGGCTTAATTAACA
CCAGAAACTTCATGGCTGAGAGCAGGGATGGTCTGGTGTCTGTTTACCCAGCACCGCAGTACCA
GAGCCACAGGCTAGTGGCCAGTGCGGCACCAGGCAGCCTGGAAGGAGGCAGAAGTGATCCTGTG
CAGCAGCTGCTGGACCCAAACACACTGCAGCAGTCCGTGGACTCCCACTATCGTCCCAACATCA
TTCTATACTCAGATGGTGTGCTCCGATCCTGGGGGGATGGTGTAGCCACTGACTGCTGTGAGAC
CACCTTCATTGAGGACCGGTCACCCACCAAAGACAGCCTGGAGTACCCCGATGGGAAATTCATC
GACCTCTCAGGGGATGACATCAAAATCCACACCCTGTCTTATGATGTGGAGGAAGAGGAGGAGT
TACAGGAGCTGGAGAGTGACTACTCTAGCGACACAGAGAGTGAGGACAACTTCCTCATGATGCC
TCCACGGGATCACCTGGGACTCAGTGTCTTCTCCATGCTCTGCTGCTTCTGGCCTTTGGGCATC
GCGGCCTTCTACTTGTCCCATGAGACAAACAAAGCTGTGGCCAAAGGAGACTTCCATCAGGCCA
GCACCAGCTCCCGGAGGGCCCTATTTCTGGCAGTGCTGTCCATTACGATTGGAACTGGCATCTA
TGTGGGTGTAGCTGTTGCCCTCATTGCCTACCTCTCCAAAAACAACCACCTGTGAGCTTTCCAA
AGGCTGGCATGAAGGAGGGGGAGCTGAGCCAGATGTATGAGGGCAGAGAAGAGACATCTGTGTG
TTACTGTACAGTACAAGGGATTGCCGGACAACTCCATGATGCCCTGGAATCTTCTACTCCTGGA
CTTCCTTTGTTTTTATCCTTCAACTTCATCTTCAGCACTGTGCAGAGCACCAGGCAGCCAGGAA
TGCTGATTCTTCCTCATGGAAGTTCCAAAGATTCCATCCCAGTGGCTGCCCCTGGATAAAGTCT
ACTGGATGGATGACAAGCCAGCTCTGTAGCCTGCCAGTGCCTGGACTAACACCCCATTAGCAAT
ATACAAACAGTCAAAATATGTTTATTTTTTATGGAATATGGTGCAATAGGCAGAATGCAGAAGA
CATGTCATCACTAGCTTGTGGCCCGCTTAAATTCTCTGTGTGTACCCCATCTTTGTGGCTTCCT
TGTCAGAAATAAGTGGGGCTGAGAAAGAAAGGAAAGCAACTGCTGGGAGATCTTCTGTCTCTCT
GTCCACAGATGGATCCTGTCTGAGAATGCAGAATTAGAGGAGCATAATGCCTACCCTGGCCTTG
CTCAGTCCCAGCACGCTGCCTCAGCTTGGAGCATCAGGCTTCTTGCAGATACCCAGCAATACAC
AGTTCTGGGGCCTCACTAATCTTAAAGGAGAGGAAACCACAGCTCCTCTCAAAAACAAACCCAG
TGTTTTCCCCGGGAGCCTGAGGGAAAGGAACTGTGAAGACACACCAGGTGTTTAACTCCTGGAT
GTTCATCCTGGTCATGAGCTTCAATGTTGGAGATCCCGGAAATGAGATGGGCCTTATTCTGTCC
ACTAAATGAATGGCTATTTTCTTGTCATTTTTTAAGTGCAACTCTTGCTTCATGCTGCTTCAGT
TGCCAGATGAATGCTGAGAAATAAGTAATCACAGATGTTTTAATACCATGTCATTGCTGTTTTA
CGAGTGTTCATTATTTAACAAAAATTATCTTTTAGCTTGTTTGGTTATGACTTTTCTTTCTGAT
GAATGGTGATGTTTTGGCTCTGTTTTGATGATTTACTTCATGCTTTA

hide sequence

RefSeq Acc Id:

XM_017591916 ⟹ XP_017447405

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	158,492,434 - 158,658,653 (+)	NCBI
mRatBN7.2	3	138,031,993 - 138,198,128 (+)	NCBI
Rnor_6.0	3	145,032,320 - 145,199,273 (+)	NCBI

Sequence:

show sequence

GGAGGATGCCCTGGCGCAGGCGGGCGTCCTGCTCCGCCTCGCAGCGCGCAGACCAGGCGGCGGT
AGCGGTGGCGGTGGCGGTTTGCCGGCCGCGGTTCTGGTGGCTTGATGCCTGGCCACTTCCTTCT
TTCACCTGTTCGTGAGAGATAATCTGGACTGCCTATTAAGACCCTTTTACAGGGAAATGGGTCC
TATGGGGCTTGTGTGACCTGTGAATACAGCCTGCTAGCCTGACGCCAAGCAGGGAGGGAGTCTA
TCATGGATGGCATCGTTGAGCAGAAGAGTGTTCTGGTACACAGTAAGATCGGTGATGCTGGCAA
AAGGAATGGCTTAATTAACACCAGAAACTTCATGGCTGAGAGCAGGGATGGTCTGGTGTCTGTT
TACCCAGCACCGCAGTACCAGAGCCACAGGCTAGTGGCCAGTGCGGCACCAGGCAGCCTGGAAG
GAGGCAGAAGTGATCCTGTGCAGCAGCTGCTGGACCCAAACACACTGCAGCAGTCCGTGGACTC
CCACTATCGTCCCAACATCATTCTATACTCAGATGGTGTGCTCCGATCCTGGGGGGATGGTGTA
GCCACTGACTGCTGTGAGACCACCTTCATTGAGGACCGGTCACCCACCAAAGACAGCCTGGAGT
ACCCCGATGGGAAATTCATCGACCTCTCAGGGGATGACATCAAAATCCACACCCTGTCTTATGA
TGTGGAGGAAGAGGAGGAGTTACAGGAGCTGGAGAGTGACTACTCTAGCGACACAGAGAGTGAG
GACAACTTCCTCATGATGCCTCCACGGGATCACCTGGGACTCAGTGTCTTCTCCATGCTCTGCT
GCTTCTGGCCTTTGGGCATCGCGGCCTTCTACTTGTCCCATGAGACAAACAAAGCTGTGGCCAA
AGGAGACTTCCATCAGGCCAGCACCAGCTCCCGGAGGGCCCTATTTCTGGCAGTGCTGTCCATT
ACGATTGGAACTGGCATCTATGTGGGTGTAGCTGTTGCCCTCATTGCCTACCTCTCCAAAAACA
ACCACCTGTGAGCTTTCCAAAGGCTGGCATGAAGGAGGGGGAGCTGAGCCAGATGTATGAGGGC
AGAGAAGAGACATCTGTGTGTTACTGTACAGTACAAGGGATTGCCGGACAACTCCATGATGCCC
TGGAATCTTCTACTCCTGGACTTCCTTTGTTTTTATCCTTCAACTTCATCTTCAGCACTGTGCA
GAGCACCAGGCAGCCAGGAATGCTGATTCTTCCTCATGGAAGTTCCAAAGATTCCATCCCAGTG
GCTGCCCCTGGATAAAGTCTACTGGATGGATGACAAGCCAGCTCTGTAGCCTGCCAGTGCCTGG
ACTAACACCCCATTAGCAATATACAAACAGTCAAAATATGTTTATTTTTTATGGAATATGGTGC
AATAGGCAGAATGCAGAAGACATGTCATCACTAGCTTGTGGCCCGCTTAAATTCTCTGTGTGTA
CCCCATCTTTGTGGCTTCCTTGTCAGAAATAAGTGGGGCTGAGAAAGAAAGGAAAGCAACTGCT
GGGAGATCTTCTGTCTCTCTGTCCACAGATGGATCCTGTCTGAGAATGCAGAATTAGAGGAGCA
TAATGCCTACCCTGGCCTTGCTCAGTCCCAGCACGCTGCCTCAGCTTGGAGCATCAGGCTTCTT
GCAGATACCCAGCAATACACAGTTCTGGGGCCTCACTAATCTTAAAGGAGAGGAAACCACAGCT
CCTCTCAAAAACAAACCCAGTGTTTTCCCCGGGAGCCTGAGGGAAAGGAACTGTGAAGACACAC
CAGGTGTTTAACTCCTGGATGTTCATCCTGGTCATGAGCTTCAATGTTGGAGATCCCGGAAATG
AGATGGGCCTTATTCTGTCCACTAAATGAATGGCTATTTTCTTGTCATTTTTTAAGTGCAACTC
TTGCTTCATGCTGCTTCAGTTGCCAGATGAATGCTGAGAAATAAGTAATCACAGATGTTTTAAT
ACCATGTCATTGCTGTTTTACGAGTGTTCATTATTTAACAAAAATTATCTTTTAGCTTGTTTGG
TTATGACTTTTCTTTCTGATGAATGGTGATGTTTTGGCTCTGTTTTGATGATTTACTTCATGCT
TTA

hide sequence

RefSeq Acc Id:

XM_017591918 ⟹ XP_017447407

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	158,491,474 - 158,658,653 (+)	NCBI
mRatBN7.2	3	138,031,004 - 138,198,128 (+)	NCBI
Rnor_6.0	3	145,031,427 - 145,199,273 (+)	NCBI

Sequence:

show sequence

CAGTTTCCTTCCAACAGCAACTACCATGGGGCCACCCGCAGTGCACCTGCGCTGGTGTTGGCCT
GAGCTACAGGCTGAGTCCTAGAGTACCGGTTTCACGCCGGTCTGGTCTTTATTCGTCGTTCTGC
TGGTCTGGACTTTGGGCTTTCTCTGGACCTACAGTGTGAGCTCTTCTGAACCTCAAGTAGACCT
GGAGCCTAGGGAGGCCTTTTAGGACCAAGGGACGCCATCGTTGCCACAGTCGGCAGCTAATTCT
TGTTCTCTTAGTCCCCCGTGGCAGTTCCCCTTCCCCCACCTCTGTCGCCCCAACGTCTCCAGAC
ATCGGCCCCCGGCCACCCGCCAGCCACTATCACTGGCAAGGGTACAGCTGGCCTGGAGCAAAGT
TGGCGGCCACCTTCGCGCGCTGCCGCTCTCTCTCTTCTTCCTCTTCCTCGCGGCTACCTTCCCC
CAGGACCCACGGCCGCCTCCTCCTGCACACAAGTCGCCAGGCTCCCGGAGACCAAAGAGTGGAA
CGGTACATCCCGGGTCACCCCTCGTTCAGCCCGCGCCCTTTGTGCTCCTAGGGGCCAAGAGGAC
AGAGCTGGGGAAGGGTGGCGCCGCAGCCCTGCGTTCGGCTCTCGGGAACCGTGTGCTCGGGGCA
GCCCGGGGCGCTGGCAGTGATCCAGGGAGGGGAGCGGCGGGGGAAGCGGCGCGCAGGGGAGGGC
TGAGGCGGAGAGCCACGAGCCCAGAGGCAGAGGCGGGCTCCGCACCGCTCCGCGCCCCGCACGC
TCCCTGGCTCTCGAGACGCGCGGGCGACAGCCTGGGCGCACCAGCCGGGTCACCTTGTCCCAGA
GGGAAATGGGTCCTATGGGGCTTGTGTGACCTGTGAATACAGCCTGCTAGCCTGACGCCAAGCA
GGGAGGGAGTCTATCATGGATGGCATCGTTGAGCAGAAGAGTGTTCTGGTACACAGTAAGATCG
GTGATGCTGGCAAAAGGAATGGCTTAATTAACACCAGAAACTTCATGGCTGAGAGCAGGGATGG
TCTGGTGTCTGTTTACCCAGCACCGCAGTACCAGAGCCACAGGCTAGTGGCCAGTGCGGCACCA
GGCAGCCTGGAAGGAGGCAGAAGTGATCCTGTGCAGCAGCTGCTGGACCCAAACACACTGCAGC
AGTCCGTGGACTCCCACTATCGTCCCAACATCATTCTATACTCAGATGGTGTGCTCCGATCCTG
GGGGGATGGTGTAGCCACTGACTGCTGTGAGACCACCTTCATTGAGGACCGGTCACCCACCAAA
GACAGCCTGGAGTACCCCGATGGGAAATTCATCGACCTCTCAGGGGATGACATCAAAATCCACA
CCCTGTCTTATGATGTGGAGGAAGAGGAGGAGTTACAGGAGCTGGAGAGTGACTACTCTAGCGA
CACAGAGAGTGAGGACAACTTCCTCATGATGCCTCCACGGGATCACCTGGGACTCAGTGTCTTC
TCCATGCTCTGCTGCTTCTGGCCTTTGGGCATCGCGGCCTTCTACTTGTCCCATGAGACAAACA
AAGCTGTGGCCAAAGGAGACTTCCATCAGGCCAGCACCAGCTCCCGGAGGGCCCTATTTCTGGC
AGTGCTGTCCATTACGATTGGAACTGGCATCTATGTGGGTGTAGCTGTTGCCCTCATTGCCTAC
CTCTCCAAAAACAACCACCTGTGAGCTTTCCAAAGGCTGGCATGAAGGAGGGGGAGCTGAGCCA
GATGTATGAGGGCAGAGAAGAGACATCTGTGTGTTACTGTACAGTACAAGGGATTGCCGGACAA
CTCCATGATGCCCTGGAATCTTCTACTCCTGGACTTCCTTTGTTTTTATCCTTCAACTTCATCT
TCAGCACTGTGCAGAGCACCAGGCAGCCAGGAATGCTGATTCTTCCTCATGGAAGTTCCAAAGA
TTCCATCCCAGTGGCTGCCCCTGGATAAAGTCTACTGGATGGATGACAAGCCAGCTCTGTAGCC
TGCCAGTGCCTGGACTAACACCCCATTAGCAATATACAAACAGTCAAAATATGTTTATTTTTTA
TGGAATATGGTGCAATAGGCAGAATGCAGAAGACATGTCATCACTAGCTTGTGGCCCGCTTAAA
TTCTCTGTGTGTACCCCATCTTTGTGGCTTCCTTGTCAGAAATAAGTGGGGCTGAGAAAGAAAG
GAAAGCAACTGCTGGGAGATCTTCTGTCTCTCTGTCCACAGATGGATCCTGTCTGAGAATGCAG
AATTAGAGGAGCATAATGCCTACCCTGGCCTTGCTCAGTCCCAGCACGCTGCCTCAGCTTGGAG
CATCAGGCTTCTTGCAGATACCCAGCAATACACAGTTCTGGGGCCTCACTAATCTTAAAGGAGA
GGAAACCACAGCTCCTCTCAAAAACAAACCCAGTGTTTTCCCCGGGAGCCTGAGGGAAAGGAAC
TGTGAAGACACACCAGGTGTTTAACTCCTGGATGTTCATCCTGGTCATGAGCTTCAATGTTGGA
GATCCCGGAAATGAGATGGGCCTTATTCTGTCCACTAAATGAATGGCTATTTTCTTGTCATTTT
TTAAGTGCAACTCTTGCTTCATGCTGCTTCAGTTGCCAGATGAATGCTGAGAAATAAGTAATCA
CAGATGTTTTAATACCATGTCATTGCTGTTTTACGAGTGTTCATTATTTAACAAAAATTATCTT
TTAGCTTGTTTGGTTATGACTTTTCTTTCTGATGAATGGTGATGTTTTGGCTCTGTTTTGATGA
TTTACTTCATGCTTTA

hide sequence

RefSeq Acc Id:

XM_017591920 ⟹ XP_017447409

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	158,492,624 - 158,658,653 (+)	NCBI
mRatBN7.2	3	138,032,090 - 138,198,128 (+)	NCBI
Rnor_6.0	3	145,032,420 - 145,199,273 (+)	NCBI

Sequence:

show sequence

CCTAGAGGGTAGCAGTGGCCGGGCCAGGGAGACACAGAGTCGCCCCCGAGAGAGGGGAGATGGC
GCCTGGCTGGGAAGATGCAGAGAGGACAGGAACCCGTACTATTGGCCCAGGCTGCAACTTGGCG
CCTCGCCACCTTGGGTACACAGGCAGCCTGAAGGGGCTGCTGTGCGACGTCGGTTAGAGCTAGT
GAGTCTGTGTCCTGAGTTCGGCGGAGCCAGGCTGCCCGGGGCCCGGCCGGAGTACGGAAAGACC
TAAGTGATACAGACCAGTCCCTGGAGCTACCTAGCTGAGTCCAAGAAGGGCTGGCGATCAAGGC
ATCCGCGGAGGGAAATGGGTCCTATGGGGCTTGTGTGACCTGTGAATACAGCCTGCTAGCCTGA
CGCCAAGCAGGGAGGGAGTCTATCATGGATGGCATCGTTGAGCAGAAGAGTGTTCTGGTACACA
GTAAGATCGGTGATGCTGGCAAAAGGAATGGCTTAATTAACACCAGAAACTTCATGGCTGAGAG
CAGGGATGGTCTGGTGTCTGTTTACCCAGCACCGCAGTACCAGAGCCACAGGCTAGTGGCCAGT
GCGGCACCAGGCAGCCTGGAAGGAGGCAGAAGTGATCCTGTGCAGCAGCTGCTGGACCCAAACA
CACTGCAGCAGTCCGTGGACTCCCACTATCGTCCCAACATCATTCTATACTCAGATGGTGTGCT
CCGATCCTGGGGGGATGGTGTAGCCACTGACTGCTGTGAGACCACCTTCATTGAGGACCGGTCA
CCCACCAAAGACAGCCTGGAGTACCCCGATGGGAAATTCATCGACCTCTCAGGGGATGACATCA
AAATCCACACCCTGTCTTATGATGTGGAGGAAGAGGAGGAGTTACAGGAGCTGGAGAGTGACTA
CTCTAGCGACACAGAGAGTGAGGACAACTTCCTCATGATGCCTCCACGGGATCACCTGGGACTC
AGTGTCTTCTCCATGCTCTGCTGCTTCTGGCCTTTGGGCATCGCGGCCTTCTACTTGTCCCATG
AGACAAACAAAGCTGTGGCCAAAGGAGACTTCCATCAGGCCAGCACCAGCTCCCGGAGGGCCCT
ATTTCTGGCAGTGCTGTCCATTACGATTGGAACTGGCATCTATGTGGGTGTAGCTGTTGCCCTC
ATTGCCTACCTCTCCAAAAACAACCACCTGTGAGCTTTCCAAAGGCTGGCATGAAGGAGGGGGA
GCTGAGCCAGATGTATGAGGGCAGAGAAGAGACATCTGTGTGTTACTGTACAGTACAAGGGATT
GCCGGACAACTCCATGATGCCCTGGAATCTTCTACTCCTGGACTTCCTTTGTTTTTATCCTTCA
ACTTCATCTTCAGCACTGTGCAGAGCACCAGGCAGCCAGGAATGCTGATTCTTCCTCATGGAAG
TTCCAAAGATTCCATCCCAGTGGCTGCCCCTGGATAAAGTCTACTGGATGGATGACAAGCCAGC
TCTGTAGCCTGCCAGTGCCTGGACTAACACCCCATTAGCAATATACAAACAGTCAAAATATGTT
TATTTTTTATGGAATATGGTGCAATAGGCAGAATGCAGAAGACATGTCATCACTAGCTTGTGGC
CCGCTTAAATTCTCTGTGTGTACCCCATCTTTGTGGCTTCCTTGTCAGAAATAAGTGGGGCTGA
GAAAGAAAGGAAAGCAACTGCTGGGAGATCTTCTGTCTCTCTGTCCACAGATGGATCCTGTCTG
AGAATGCAGAATTAGAGGAGCATAATGCCTACCCTGGCCTTGCTCAGTCCCAGCACGCTGCCTC
AGCTTGGAGCATCAGGCTTCTTGCAGATACCCAGCAATACACAGTTCTGGGGCCTCACTAATCT
TAAAGGAGAGGAAACCACAGCTCCTCTCAAAAACAAACCCAGTGTTTTCCCCGGGAGCCTGAGG
GAAAGGAACTGTGAAGACACACCAGGTGTTTAACTCCTGGATGTTCATCCTGGTCATGAGCTTC
AATGTTGGAGATCCCGGAAATGAGATGGGCCTTATTCTGTCCACTAAATGAATGGCTATTTTCT
TGTCATTTTTTAAGTGCAACTCTTGCTTCATGCTGCTTCAGTTGCCAGATGAATGCTGAGAAAT
AAGTAATCACAGATGTTTTAATACCATGTCATTGCTGTTTTACGAGTGTTCATTATTTAACAAA
AATTATCTTTTAGCTTGTTTGGTTATGACTTTTCTTTCTGATGAATGGTGATGTTTTGGCTCTG
TTTTGATGATTTACTTCATGCTTTA

hide sequence

RefSeq Acc Id:

XM_017591922 ⟹ XP_017447411

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	158,492,429 - 158,658,653 (+)	NCBI
mRatBN7.2	3	138,031,993 - 138,198,128 (+)	NCBI
Rnor_6.0	3	145,032,320 - 145,199,273 (+)	NCBI

Sequence:

show sequence

GGAGGATGCCCTGGCGCAGGCGGGCGTCCTGCTCCGCCTCGCAGCGCGCAGACCAGGCGGCGGT
AGCGGTGGCGGTGGCGGTTTGCCGGCCGCGGGAAATGGGTCCTATGGGGCTTGTGTGACCTGTG
AATACAGCCTGCTAGCCTGACGCCAAGCAGGGAGGGAGTCTATCATGGATGGCATCGTTGAGCA
GAAGAGTGTTCTGGTACACAGTAAGATCGGTGATGCTGGCAAAAGGAATGGCTTAATTAACACC
AGAAACTTCATGGCTGAGAGCAGGGATGGTCTGGTGTCTGTTTACCCAGCACCGCAGTACCAGA
GCCACAGGCTAGTGGCCAGTGCGGCACCAGGCAGCCTGGAAGGAGGCAGAAGTGATCCTGTGCA
GCAGCTGCTGGACCCAAACACACTGCAGCAGTCCGTGGACTCCCACTATCGTCCCAACATCATT
CTATACTCAGATGGTGTGCTCCGATCCTGGGGGGATGGTGTAGCCACTGACTGCTGTGAGACCA
CCTTCATTGAGGACCGGTCACCCACCAAAGACAGCCTGGAGTACCCCGATGGGAAATTCATCGA
CCTCTCAGGGGATGACATCAAAATCCACACCCTGTCTTATGATGTGGAGGAAGAGGAGGAGTTA
CAGGAGCTGGAGAGTGACTACTCTAGCGACACAGAGAGTGAGGACAACTTCCTCATGATGCCTC
CACGGGATCACCTGGGACTCAGTGTCTTCTCCATGCTCTGCTGCTTCTGGCCTTTGGGCATCGC
GGCCTTCTACTTGTCCCATGAGACAAACAAAGCTGTGGCCAAAGGAGACTTCCATCAGGCCAGC
ACCAGCTCCCGGAGGGCCCTATTTCTGGCAGTGCTGTCCATTACGATTGGAACTGGCATCTATG
TGGGTGTAGCTGTTGCCCTCATTGCCTACCTCTCCAAAAACAACCACCTGTGAGCTTTCCAAAG
GCTGGCATGAAGGAGGGGGAGCTGAGCCAGATGTATGAGGGCAGAGAAGAGACATCTGTGTGTT
ACTGTACAGTACAAGGGATTGCCGGACAACTCCATGATGCCCTGGAATCTTCTACTCCTGGACT
TCCTTTGTTTTTATCCTTCAACTTCATCTTCAGCACTGTGCAGAGCACCAGGCAGCCAGGAATG
CTGATTCTTCCTCATGGAAGTTCCAAAGATTCCATCCCAGTGGCTGCCCCTGGATAAAGTCTAC
TGGATGGATGACAAGCCAGCTCTGTAGCCTGCCAGTGCCTGGACTAACACCCCATTAGCAATAT
ACAAACAGTCAAAATATGTTTATTTTTTATGGAATATGGTGCAATAGGCAGAATGCAGAAGACA
TGTCATCACTAGCTTGTGGCCCGCTTAAATTCTCTGTGTGTACCCCATCTTTGTGGCTTCCTTG
TCAGAAATAAGTGGGGCTGAGAAAGAAAGGAAAGCAACTGCTGGGAGATCTTCTGTCTCTCTGT
CCACAGATGGATCCTGTCTGAGAATGCAGAATTAGAGGAGCATAATGCCTACCCTGGCCTTGCT
CAGTCCCAGCACGCTGCCTCAGCTTGGAGCATCAGGCTTCTTGCAGATACCCAGCAATACACAG
TTCTGGGGCCTCACTAATCTTAAAGGAGAGGAAACCACAGCTCCTCTCAAAAACAAACCCAGTG
TTTTCCCCGGGAGCCTGAGGGAAAGGAACTGTGAAGACACACCAGGTGTTTAACTCCTGGATGT
TCATCCTGGTCATGAGCTTCAATGTTGGAGATCCCGGAAATGAGATGGGCCTTATTCTGTCCAC
TAAATGAATGGCTATTTTCTTGTCATTTTTTAAGTGCAACTCTTGCTTCATGCTGCTTCAGTTG
CCAGATGAATGCTGAGAAATAAGTAATCACAGATGTTTTAATACCATGTCATTGCTGTTTTACG
AGTGTTCATTATTTAACAAAAATTATCTTTTAGCTTGTTTGGTTATGACTTTTCTTTCTGATGA
ATGGTGATGTTTTGGCTCTGTTTTGATGATTTACTTCATGCTTTA

hide sequence

RefSeq Acc Id:

XM_039105477 ⟹ XP_038961405

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	158,492,102 - 158,658,653 (+)	NCBI
mRatBN7.2	3	138,031,003 - 138,198,128 (+)	NCBI

RefSeq Acc Id:

XM_039105478 ⟹ XP_038961406

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	158,492,624 - 158,658,653 (+)	NCBI
mRatBN7.2	3	138,032,090 - 138,198,128 (+)	NCBI

RefSeq Acc Id:

XM_039105480 ⟹ XP_038961408

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	158,492,624 - 158,658,653 (+)	NCBI
mRatBN7.2	3	138,032,090 - 138,198,128 (+)	NCBI

RefSeq Acc Id:

XM_039105481 ⟹ XP_038961409

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	158,492,095 - 158,695,174 (+)	NCBI
mRatBN7.2	3	138,030,995 - 138,234,646 (+)	NCBI

RefSeq Acc Id:

XR_005501940

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	158,492,103 - 158,695,174 (+)	NCBI
mRatBN7.2	3	138,031,004 - 138,234,646 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020191	(Get FASTA)	NCBI Sequence Viewer
	XP_017447401	(Get FASTA)	NCBI Sequence Viewer
	XP_017447402	(Get FASTA)	NCBI Sequence Viewer
	XP_017447405	(Get FASTA)	NCBI Sequence Viewer
	XP_017447407	(Get FASTA)	NCBI Sequence Viewer
	XP_017447409	(Get FASTA)	NCBI Sequence Viewer
	XP_017447411	(Get FASTA)	NCBI Sequence Viewer
	XP_038961405	(Get FASTA)	NCBI Sequence Viewer
	XP_038961406	(Get FASTA)	NCBI Sequence Viewer
	XP_038961408	(Get FASTA)	NCBI Sequence Viewer
	XP_038961409	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH92131	(Get FASTA)	NCBI Sequence Viewer
	EDL95059	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000060788
	ENSRNOP00000060788.2
GenBank Protein	Q58DZ9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020191 ⟸ NM_001025020

- UniProtKB:

Q58DZ9 (UniProtKB/Swiss-Prot), A6K7G0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDGIVEQKSVLVHSKIGDAGKRNGLINTRNFMAESRDGLVSVYPAPQYQSHRLVASAAPGSLEG
GRSDPVQQLLDPNTLQQSVDSHYRPNIILYSDGVLRSWGDGVATDCCETTFIEDRSPTKDSLEY
PDGKFIDLSGDDIKIHTLSYDVEEEEELQELESDYSSDTESEDNFLMMPPRDHLGLSVFSMLCC
FWPLGIAAFYLSHETNKAVAKGDFHQASTSSRRALFLAVLSITIGTGIYVGVAVALIAYLSKNN
HL

hide sequence

RefSeq Acc Id:	XP_017447407 ⟸ XM_017591918
- Peptide Label:	isoform X1
- UniProtKB:	Q58DZ9 (UniProtKB/Swiss-Prot), A6K7G0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGIVEQKSVLVHSKIGDAGKRNGLINTRNFMAESRDGLVSVYPAPQYQSHRLVASAAPGSLEG GRSDPVQQLLDPNTLQQSVDSHYRPNIILYSDGVLRSWGDGVATDCCETTFIEDRSPTKDSLEY PDGKFIDLSGDDIKIHTLSYDVEEEEELQELESDYSSDTESEDNFLMMPPRDHLGLSVFSMLCC FWPLGIAAFYLSHETNKAVAKGDFHQASTSSRRALFLAVLSITIGTGIYVGVAVALIAYLSKNN HL hide sequence

RefSeq Acc Id:	XP_017447405 ⟸ XM_017591916
- Peptide Label:	isoform X1
- UniProtKB:	Q58DZ9 (UniProtKB/Swiss-Prot), A6K7G0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGIVEQKSVLVHSKIGDAGKRNGLINTRNFMAESRDGLVSVYPAPQYQSHRLVASAAPGSLEG GRSDPVQQLLDPNTLQQSVDSHYRPNIILYSDGVLRSWGDGVATDCCETTFIEDRSPTKDSLEY PDGKFIDLSGDDIKIHTLSYDVEEEEELQELESDYSSDTESEDNFLMMPPRDHLGLSVFSMLCC FWPLGIAAFYLSHETNKAVAKGDFHQASTSSRRALFLAVLSITIGTGIYVGVAVALIAYLSKNN HL hide sequence

RefSeq Acc Id:	XP_017447411 ⟸ XM_017591922
- Peptide Label:	isoform X1
- UniProtKB:	Q58DZ9 (UniProtKB/Swiss-Prot), A6K7G0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGIVEQKSVLVHSKIGDAGKRNGLINTRNFMAESRDGLVSVYPAPQYQSHRLVASAAPGSLEG GRSDPVQQLLDPNTLQQSVDSHYRPNIILYSDGVLRSWGDGVATDCCETTFIEDRSPTKDSLEY PDGKFIDLSGDDIKIHTLSYDVEEEEELQELESDYSSDTESEDNFLMMPPRDHLGLSVFSMLCC FWPLGIAAFYLSHETNKAVAKGDFHQASTSSRRALFLAVLSITIGTGIYVGVAVALIAYLSKNN HL hide sequence

RefSeq Acc Id:	XP_017447401 ⟸ XM_017591912
- Peptide Label:	isoform X1
- UniProtKB:	Q58DZ9 (UniProtKB/Swiss-Prot), A6K7G0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGIVEQKSVLVHSKIGDAGKRNGLINTRNFMAESRDGLVSVYPAPQYQSHRLVASAAPGSLEG GRSDPVQQLLDPNTLQQSVDSHYRPNIILYSDGVLRSWGDGVATDCCETTFIEDRSPTKDSLEY PDGKFIDLSGDDIKIHTLSYDVEEEEELQELESDYSSDTESEDNFLMMPPRDHLGLSVFSMLCC FWPLGIAAFYLSHETNKAVAKGDFHQASTSSRRALFLAVLSITIGTGIYVGVAVALIAYLSKNN HL hide sequence

RefSeq Acc Id:	XP_017447402 ⟸ XM_017591913
- Peptide Label:	isoform X1
- UniProtKB:	Q58DZ9 (UniProtKB/Swiss-Prot), A6K7G0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGIVEQKSVLVHSKIGDAGKRNGLINTRNFMAESRDGLVSVYPAPQYQSHRLVASAAPGSLEG GRSDPVQQLLDPNTLQQSVDSHYRPNIILYSDGVLRSWGDGVATDCCETTFIEDRSPTKDSLEY PDGKFIDLSGDDIKIHTLSYDVEEEEELQELESDYSSDTESEDNFLMMPPRDHLGLSVFSMLCC FWPLGIAAFYLSHETNKAVAKGDFHQASTSSRRALFLAVLSITIGTGIYVGVAVALIAYLSKNN HL hide sequence

RefSeq Acc Id:	XP_017447409 ⟸ XM_017591920
- Peptide Label:	isoform X1
- UniProtKB:	Q58DZ9 (UniProtKB/Swiss-Prot), A6K7G0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGIVEQKSVLVHSKIGDAGKRNGLINTRNFMAESRDGLVSVYPAPQYQSHRLVASAAPGSLEG GRSDPVQQLLDPNTLQQSVDSHYRPNIILYSDGVLRSWGDGVATDCCETTFIEDRSPTKDSLEY PDGKFIDLSGDDIKIHTLSYDVEEEEELQELESDYSSDTESEDNFLMMPPRDHLGLSVFSMLCC FWPLGIAAFYLSHETNKAVAKGDFHQASTSSRRALFLAVLSITIGTGIYVGVAVALIAYLSKNN HL hide sequence

Ensembl Acc Id:

ENSRNOP00000060788 ⟸ ENSRNOT00000068210

RefSeq Acc Id:	XP_038961409 ⟸ XM_039105481
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038961405 ⟸ XM_039105477
- Peptide Label:	isoform X1
- UniProtKB:	Q58DZ9 (UniProtKB/Swiss-Prot), A6K7G0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961406 ⟸ XM_039105478
- Peptide Label:	isoform X1
- UniProtKB:	Q58DZ9 (UniProtKB/Swiss-Prot), A6K7G0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038961408 ⟸ XM_039105480
- Peptide Label:	isoform X1
- UniProtKB:	Q58DZ9 (UniProtKB/Swiss-Prot), A6K7G0 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q58DZ9-F1-model_v2	AlphaFold	Q58DZ9	1-258	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692512

Promoter ID:

EPDNEW_R3037

Type:

initiation region

Name:

Syndig1_1

Description:

synapse differentiation inducing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	145,032,132 - 145,032,192	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310753	AgrOrtholog
BioCyc Gene	G2FUF-47456	BioCyc
Ensembl Genes	ENSRNOG00000031536	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000068210	ENTREZGENE
	ENSRNOT00000068210.4	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7312153	IMAGE-MGC_LOAD
InterPro	CD225/Dispanin_fam	UniProtKB/Swiss-Prot
KEGG Report	rno:362235	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105581	IMAGE-MGC_LOAD
NCBI Gene	362235	ENTREZGENE
PANTHER	SYNAPSE DIFFERENTIATION-INDUCING GENE PROTEIN 1	UniProtKB/Swiss-Prot
	UPF0338 PROTEIN	UniProtKB/Swiss-Prot
Pfam	CD225	UniProtKB/Swiss-Prot
PhenoGen	Syndig1	PhenoGen
RatGTEx	ENSRNOG00000031536	RatGTEx
UniProt	A6K7G0	ENTREZGENE, UniProtKB/TrEMBL
	Q58DZ9	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Syndig1	synapse differentiation inducing 1	LOC103691925	uncharacterized LOC103691925	Data merged from RGD:9408152	737654	PROVISIONAL
2014-08-25	LOC103691925	uncharacterized LOC103691925			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-12-06	RGD1310753	similar to chromosome 20 open reading frame 39	RGD1310753_predicted	similar to chromosome 20 open reading frame 39 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1310753_predicted	similar to chromosome 20 open reading frame 39 (predicted)	LOC362235_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362235_predicted	similar to chromosome 20 open reading frame 39 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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