Gene: Syndig1 (synapse differentiation inducing 1) Rattus norvegicus
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Symbol: Syndig1
Name: synapse differentiation inducing 1
Description: ENCODES a protein that exhibits glutamate receptor binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN positive regulation of synapse assembly; synaptic vesicle clustering; intracellular protein transport (ortholog); FOUND IN cell body; dendritic shaft; dendritic spine; INTERACTS WITH acrylamide; bisphenol A; furan
AGR Description: Predicted to have glutamate receptor binding activity and protein homodimerization activity; involved in positive regulation of synapse assembly and synaptic vesicle clustering; localizes to the cell body, excitatory synapse, and neuron projection; orthologous to human SYNDIG1 (synapse differentiation inducing 1).
Merged Description: Predicted to have glutamate receptor binding activity and protein homodimerization activity; involved in positive regulation of synapse assembly and synaptic vesicle clustering; localizes to the cell body, excitatory synapse, and neuron projection; orthologous to human SYNDIG1 (synapse differentiation inducing 1); INTERACTS WITH acrylamide; bisphenol A; furan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: dispanin subfamily C member 2; DSPC2; LOC362235; RGD1310753; similar to chromosome 20 open reading frame 39; synapse differentiation-inducing gene protein 1; Tmem90b; transmembrane protein 90B
Orthologs:
Homo sapiens (human) : SYNDIG1 (synapse differentiation inducing 1)  HGNC  Alliance
Mus musculus (house mouse) : Syndig1 (synapse differentiation inducing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Syndig1 (synapse differentiation inducing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SYNDIG1 (synapse differentiation inducing 1)
Canis lupus familiaris (dog) : SYNDIG1 (synapse differentiation inducing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Syndig1 (synapse differentiation inducing 1)
Sus scrofa (pig) : SYNDIG1 (synapse differentiation inducing 1)
more info ...
Allele / Splice: Syndig1Tn(sb-T2/Bart3)2.171Mcwi  
Genetic Models: F344-Syndig1Tn(sb-T2/Bart3)2.171Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03145,031,427 - 145,199,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03151,405,855 - 151,571,801 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43139,434,170 - 139,834,916 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13139,339,742 - 139,740,488 (+)NCBI
Celera3136,716,149 - 136,879,658 (+)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
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QTLs in Region (Rnor_6.0)
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Sequence

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Strain Variation

Strain Sequence Variants (Rnor 5.0)

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Nomenclature History
  
More on Syndig1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310753
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



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