Gene: Syndig1 (synapse differentiation inducing 1) Rattus norvegicus
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Symbol: Syndig1
Name: synapse differentiation inducing 1
Description: ENCODES a protein that exhibits glutamate receptor binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN positive regulation of synapse assembly; synaptic vesicle clustering; intracellular protein transport (ortholog); FOUND IN cell body; dendritic shaft; dendritic spine; INTERACTS WITH acrylamide; bisphenol A; furan
AGR Description: Predicted to have glutamate receptor binding activity and protein homodimerization activity; involved in positive regulation of synapse assembly and synaptic vesicle clustering; localizes to the cell body, excitatory synapse, and neuron projection; orthologous to human SYNDIG1 (synapse differentiation inducing 1).
Merged Description: Predicted to have glutamate receptor binding activity and protein homodimerization activity; involved in positive regulation of synapse assembly and synaptic vesicle clustering; localizes to the cell body, excitatory synapse, and neuron projection; orthologous to human SYNDIG1 (synapse differentiation inducing 1); INTERACTS WITH acrylamide; bisphenol A; furan.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: dispanin subfamily C member 2; DSPC2; LOC362235; RGD1310753; similar to chromosome 20 open reading frame 39; synapse differentiation-inducing gene protein 1; Tmem90b; transmembrane protein 90B
Orthologs:
Homo sapiens (human) : SYNDIG1 (synapse differentiation inducing 1)  HGNC  Alliance
Mus musculus (house mouse) : Syndig1 (synapse differentiation inducing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Syndig1 (synapse differentiation inducing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SYNDIG1 (synapse differentiation inducing 1)
Canis lupus familiaris (dog) : SYNDIG1 (synapse differentiation inducing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Syndig1 (synapse differentiation inducing 1)
Sus scrofa (pig) : SYNDIG1 (synapse differentiation inducing 1)
more info ...
Allele / Splice: Syndig1Tn(sb-T2/Bart3)2.171Mcwi  
Genetic Models: F344-Syndig1Tn(sb-T2/Bart3)2.171Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03145,031,427 - 145,199,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03151,405,855 - 151,571,801 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43139,434,170 - 139,834,916 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13139,339,742 - 139,740,488 (+)NCBI
Celera3136,716,149 - 136,879,658 (+)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated
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Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
Genetic Models
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Syndig1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310753
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-04-12
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.