Phtf2 (putative homeodomain transcription factor 2) - Rat Genome Database

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Gene: Phtf2 (putative homeodomain transcription factor 2) Rattus norvegicus
Analyze
Symbol: Phtf2
Name: putative homeodomain transcription factor 2
RGD ID: 1310593
Description: Predicted to be located in endoplasmic reticulum. Orthologous to human PHTF2 (putative homeodomain transcription factor 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC296762
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2414,215,190 - 14,330,513 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl414,215,263 - 14,330,513 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx419,352,075 - 19,465,936 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0415,154,106 - 15,267,965 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0413,537,712 - 13,651,579 (+)NCBIRnor_WKY
Rnor_6.0410,823,191 - 10,938,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl410,823,281 - 10,938,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0410,815,469 - 10,930,367 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.449,735,842 - 9,850,438 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.149,760,585 - 9,873,715 (+)NCBI
Celera49,776,667 - 9,890,034 (+)NCBICelera
Cytogenetic Map4q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:31904090  


Genomics

Comparative Map Data
Phtf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2414,215,190 - 14,330,513 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl414,215,263 - 14,330,513 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx419,352,075 - 19,465,936 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0415,154,106 - 15,267,965 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0413,537,712 - 13,651,579 (+)NCBIRnor_WKY
Rnor_6.0410,823,191 - 10,938,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl410,823,281 - 10,938,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0410,815,469 - 10,930,367 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.449,735,842 - 9,850,438 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.149,760,585 - 9,873,715 (+)NCBI
Celera49,776,667 - 9,890,034 (+)NCBICelera
Cytogenetic Map4q11NCBI
PHTF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38777,798,773 - 77,957,504 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl777,798,773 - 77,957,503 (+)EnsemblGRCh38hg38GRCh38
GRCh37777,428,090 - 77,586,821 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36777,307,433 - 77,424,475 (+)NCBINCBI36Build 36hg18NCBI36
Build 34777,114,147 - 77,231,190NCBI
Celera772,128,704 - 72,287,454 (+)NCBICelera
Cytogenetic Map7q11.23-q21.11NCBI
HuRef772,031,196 - 72,189,845 (+)NCBIHuRef
CHM1_1777,358,352 - 77,517,058 (+)NCBICHM1_1
T2T-CHM13v2.0779,050,700 - 79,209,413 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2776,761,172 - 76,918,889 (+)NCBI
Phtf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39520,963,662 - 21,087,122 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl520,963,661 - 21,087,122 (-)EnsemblGRCm39 Ensembl
GRCm38520,758,664 - 20,882,137 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl520,758,663 - 20,882,124 (-)EnsemblGRCm38mm10GRCm38
MGSCv37520,264,482 - 20,387,942 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36520,270,593 - 20,393,850 (-)NCBIMGSCv36mm8
Celera517,720,360 - 17,839,776 (-)NCBICelera
Cytogenetic Map5A3NCBI
Phtf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554107,344,526 - 7,423,050 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554107,344,526 - 7,442,802 (-)NCBIChiLan1.0ChiLan1.0
PHTF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1783,538,530 - 83,698,107 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl783,579,418 - 83,695,756 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0769,724,248 - 69,885,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PHTF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11817,810,450 - 17,923,837 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1817,810,469 - 17,921,645 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1817,403,303 - 17,516,663 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01818,129,829 - 18,243,340 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1818,129,812 - 18,243,340 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11817,880,121 - 17,993,696 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01817,819,639 - 17,933,061 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01818,089,315 - 18,202,619 (+)NCBIUU_Cfam_GSD_1.0
Phtf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511860,032,716 - 60,178,093 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493647921,156,501 - 21,302,060 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHTF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9102,221,326 - 102,348,696 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19102,221,033 - 102,348,748 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29112,741,454 - 112,868,682 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHTF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12170,974,679 - 71,134,791 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2170,974,474 - 71,134,673 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604232,789,719 - 32,949,477 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phtf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473926,981,590 - 27,070,866 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473926,965,769 - 27,070,808 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH130459  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2414,330,216 - 14,330,396 (+)MAPPERmRatBN7.2
Rnor_6.0410,937,977 - 10,938,156NCBIRnor6.0
Rnor_5.0410,930,071 - 10,930,250UniSTSRnor5.0
RGSC_v3.449,850,142 - 9,850,321UniSTSRGSC3.4
Celera49,889,738 - 9,889,917UniSTS
RH 3.4 Map460.0UniSTS
Cytogenetic Map4q11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:534
Count of miRNA genes:247
Interacting mature miRNAs:334
Transcripts:ENSRNOT00000066739
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 42 13 6 18 6 8 11 59 22 33 7 8
Low 3 1 44 35 1 35 15 13 8 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066739   ⟹   ENSRNOP00000059716
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl414,215,263 - 14,330,513 (+)Ensembl
Rnor_6.0 Ensembl410,823,281 - 10,938,318 (+)Ensembl
RefSeq Acc Id: NM_001106577   ⟹   NP_001100047
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2414,215,263 - 14,330,513 (+)NCBI
Rnor_6.0410,823,258 - 10,938,273 (+)NCBI
Rnor_5.0410,815,469 - 10,930,367 (+)NCBI
RGSC_v3.449,735,842 - 9,850,438 (+)RGD
Celera49,776,667 - 9,890,034 (+)RGD
Sequence:
RefSeq Acc Id: XM_008762643   ⟹   XP_008760865
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2414,215,192 - 14,330,442 (+)NCBI
Rnor_6.0410,823,192 - 10,938,202 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762644   ⟹   XP_008760866
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2414,215,190 - 14,304,240 (+)NCBI
Rnor_6.0410,846,285 - 10,912,702 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592518   ⟹   XP_017448007
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2414,215,191 - 14,330,442 (+)NCBI
Rnor_6.0410,823,191 - 10,938,202 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592519   ⟹   XP_017448008
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2414,224,886 - 14,330,442 (+)NCBI
Rnor_6.0410,832,870 - 10,938,202 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592520   ⟹   XP_017448009
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2414,223,439 - 14,330,442 (+)NCBI
Rnor_6.0410,831,437 - 10,938,202 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107247   ⟹   XP_038963175
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2414,215,192 - 14,330,442 (+)NCBI
RefSeq Acc Id: XM_039107248   ⟹   XP_038963176
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2414,215,191 - 14,330,442 (+)NCBI
RefSeq Acc Id: XM_039107250   ⟹   XP_038963178
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2414,282,306 - 14,330,442 (+)NCBI
RefSeq Acc Id: XM_039107251   ⟹   XP_038963179
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2414,215,191 - 14,314,249 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001100047   ⟸   NM_001106577
- UniProtKB: D3ZSS0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760866   ⟸   XM_008762644
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008760865   ⟸   XM_008762643
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017448007   ⟸   XM_017592518
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017448009   ⟸   XM_017592520
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017448008   ⟸   XM_017592519
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000059716   ⟸   ENSRNOT00000066739
RefSeq Acc Id: XP_038963176   ⟸   XM_039107248
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038963179   ⟸   XM_039107251
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038963175   ⟸   XM_039107247
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038963178   ⟸   XM_039107250
- Peptide Label: isoform X5
Protein Domains
Phtf-FEM1B_bdg

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSS0-F1-model_v2 AlphaFold D3ZSS0 1-747 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692816
Promoter ID:EPDNEW_R3340
Type:initiation region
Name:Phtf2_1
Description:putative homeodomain transcription factor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0410,823,291 - 10,823,351EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310593 AgrOrtholog
BioCyc Gene G2FUF-45955 BioCyc
Ensembl Genes ENSRNOG00000013517 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000059716 ENTREZGENE
  ENSRNOP00000059716.3 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066739 ENTREZGENE
  ENSRNOT00000066739.4 UniProtKB/TrEMBL
InterPro PHTF1/2 UniProtKB/TrEMBL
  TF_homeodomain_male UniProtKB/TrEMBL
NCBI Gene 296762 ENTREZGENE
PANTHER PTHR12680 UniProtKB/TrEMBL
Pfam Phtf-FEM1B_bdg UniProtKB/TrEMBL
PhenoGen Phtf2 PhenoGen
UniProt D3ZSS0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Phtf2  putative homeodomain transcription factor 2   Phtf2_predicted  putative homeodomain transcription factor 2 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Phtf2_predicted  putative homeodomain transcription factor 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED