Plxnb1 (plexin B1) - Rat Genome Database

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Gene: Plxnb1 (plexin B1) Rattus norvegicus
Analyze
Symbol: Plxnb1
Name: plexin B1
RGD ID: 1310564
Description: Predicted to enable GTPase activating protein binding activity and semaphorin receptor activity. Predicted to be involved in several processes, including inhibitory synapse assembly; negative regulation of osteoblast proliferation; and semaphorin-plexin signaling pathway. Predicted to be part of semaphorin receptor complex. Predicted to be active in plasma membrane. Orthologous to human PLXNB1 (plexin B1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102555419; LOC316009; plexin-B1; uncharacterized LOC102555419
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28109,743,470 - 109,769,153 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,744,697 - 109,769,027 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8115,359,481 - 115,383,860 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.08113,558,656 - 113,583,035 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.08111,401,462 - 111,425,841 (+)NCBIRnor_WKY
Rnor_6.08117,832,826 - 117,858,515 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,836,701 - 117,856,689 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08117,184,493 - 117,210,265 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48114,109,955 - 114,133,875 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18114,133,688 - 114,152,415 (+)NCBI
Celera8109,034,715 - 109,060,199 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:14732713   PMID:15218527   PMID:15297673   PMID:15330859   PMID:16188938   PMID:19788569   PMID:19843518   PMID:22019888   PMID:23699507   PMID:26489627   PMID:28624895  
PMID:29981480   PMID:35236339  


Genomics

Comparative Map Data
Plxnb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28109,743,470 - 109,769,153 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,744,697 - 109,769,027 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8115,359,481 - 115,383,860 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.08113,558,656 - 113,583,035 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.08111,401,462 - 111,425,841 (+)NCBIRnor_WKY
Rnor_6.08117,832,826 - 117,858,515 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,836,701 - 117,856,689 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08117,184,493 - 117,210,265 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48114,109,955 - 114,133,875 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18114,133,688 - 114,152,415 (+)NCBI
Celera8109,034,715 - 109,060,199 (+)NCBICelera
Cytogenetic Map8q32NCBI
PLXNB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38348,403,854 - 48,430,310 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl348,403,854 - 48,430,086 (-)EnsemblGRCh38hg38GRCh38
GRCh37348,445,261 - 48,471,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36348,420,267 - 48,441,746 (-)NCBINCBI36Build 36hg18NCBI36
Build 34348,420,266 - 48,441,746NCBI
Celera348,396,031 - 48,422,232 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef348,499,564 - 48,525,765 (-)NCBIHuRef
CHM1_1348,397,545 - 48,423,744 (-)NCBICHM1_1
T2T-CHM13v2.0348,431,864 - 48,458,098 (-)NCBIT2T-CHM13v2.0
Plxnb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,922,915 - 108,948,983 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,924,457 - 108,948,985 (+)EnsemblGRCm39 Ensembl
GRCm389109,093,849 - 109,119,915 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9109,095,389 - 109,119,917 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,997,950 - 109,022,429 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369108,952,998 - 108,977,317 (+)NCBIMGSCv36mm8
Celera9108,654,084 - 108,678,637 (+)NCBICelera
Cytogenetic Map9F2NCBI
Plxnb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955532474,354 - 494,527 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955532471,652 - 499,525 (-)NCBIChiLan1.0ChiLan1.0
PLXNB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1349,408,666 - 49,434,912 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl349,408,666 - 49,434,913 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0348,325,892 - 48,352,128 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PLXNB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12040,658,938 - 40,685,219 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2040,661,772 - 40,684,265 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2040,576,434 - 40,601,945 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02041,144,331 - 41,169,843 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2041,145,066 - 41,169,843 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12040,382,740 - 40,410,636 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02040,786,338 - 40,811,847 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02041,067,071 - 41,092,583 (+)NCBIUU_Cfam_GSD_1.0
Plxnb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560263,437,337 - 63,468,607 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936529200,210 - 221,227 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936529197,834 - 226,064 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLXNB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,113,914 - 31,140,220 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,113,910 - 31,140,133 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,286,059 - 34,293,379 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PLXNB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1229,805,358 - 9,833,102 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl229,806,907 - 9,827,640 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041157,258,775 - 157,286,207 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plxnb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247302,371,147 - 2,391,308 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247302,368,329 - 2,396,284 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Plxnb1
88 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:58
Interacting mature miRNAs:63
Transcripts:ENSRNOT00000043345
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088624Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088624Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat

Markers in Region
BE110100  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28109,767,885 - 109,768,094 (+)MAPPERmRatBN7.2
Rnor_6.08117,857,253 - 117,857,461NCBIRnor6.0
Rnor_5.08117,208,998 - 117,209,206UniSTSRnor5.0
RGSC_v3.48114,132,731 - 114,132,939UniSTSRGSC3.4
Celera8109,058,937 - 109,059,145UniSTS
RH 3.4 Map81114.79UniSTS
Cytogenetic Map8q32UniSTS
AI112406  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28109,768,881 - 109,769,063 (+)MAPPERmRatBN7.2
Rnor_6.08117,858,249 - 117,858,430NCBIRnor6.0
Rnor_5.08117,209,994 - 117,210,175UniSTSRnor5.0
RGSC_v3.48114,133,727 - 114,133,908UniSTSRGSC3.4
Celera8109,059,933 - 109,060,114UniSTS
Cytogenetic Map8q32UniSTS
BF411491  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28109,762,229 - 109,762,402 (+)MAPPERmRatBN7.2
Rnor_6.08117,851,597 - 117,851,769NCBIRnor6.0
Rnor_5.08117,203,342 - 117,203,514UniSTSRnor5.0
RGSC_v3.48114,127,075 - 114,127,247UniSTSRGSC3.4
Celera8109,053,281 - 109,053,453UniSTS
Cytogenetic Map8q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 43 19 12 12 74 30 32 11
Low 3 38 29 19 29 8 11 5 9 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001108188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CA504175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000043345   ⟹   ENSRNOP00000048230
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8109,744,697 - 109,769,027 (+)Ensembl
Rnor_6.0 Ensembl8117,836,701 - 117,856,689 (+)Ensembl
RefSeq Acc Id: NM_001108188   ⟹   NP_001101658
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28109,744,697 - 109,769,029 (+)NCBI
RefSeq Acc Id: XM_006243883   ⟹   XP_006243945
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28109,743,470 - 109,769,153 (+)NCBI
Rnor_6.08117,832,826 - 117,858,515 (+)NCBI
Rnor_5.08117,184,493 - 117,210,265 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243884   ⟹   XP_006243946
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28109,747,303 - 109,769,153 (+)NCBI
Rnor_6.08117,836,621 - 117,858,515 (+)NCBI
Rnor_5.08117,184,493 - 117,210,265 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006243885   ⟹   XP_006243947
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28109,743,846 - 109,769,153 (+)NCBI
Rnor_6.08117,833,078 - 117,858,515 (+)NCBI
Rnor_5.08117,184,493 - 117,210,265 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081602   ⟹   XP_038937530
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28109,743,470 - 109,769,153 (+)NCBI
RefSeq Acc Id: XM_039081603   ⟹   XP_038937531
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28109,743,853 - 109,769,153 (+)NCBI
RefSeq Acc Id: XM_039081604   ⟹   XP_038937532
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28109,745,427 - 109,769,153 (+)NCBI
RefSeq Acc Id: XM_039081605   ⟹   XP_038937533
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28109,744,511 - 109,769,153 (+)NCBI
RefSeq Acc Id: XM_039081606   ⟹   XP_038937534
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28109,752,809 - 109,769,153 (+)NCBI
RefSeq Acc Id: XM_039081607   ⟹   XP_038937535
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28109,754,494 - 109,769,153 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_006243945   ⟸   XM_006243883
- Peptide Label: isoform X1
- UniProtKB: D3ZDX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243947   ⟸   XM_006243885
- Peptide Label: isoform X1
- UniProtKB: D3ZDX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243946   ⟸   XM_006243884
- Peptide Label: isoform X1
- UniProtKB: D3ZDX5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000048230   ⟸   ENSRNOT00000043345
RefSeq Acc Id: XP_038937530   ⟸   XM_039081602
- Peptide Label: isoform X1
- UniProtKB: D3ZDX5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937531   ⟸   XM_039081603
- Peptide Label: isoform X1
- UniProtKB: D3ZDX5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937533   ⟸   XM_039081605
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001101658   ⟸   NM_001108188
- Peptide Label: precursor
- UniProtKB: D3ZDX5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937532   ⟸   XM_039081604
- Peptide Label: isoform X1
- UniProtKB: D3ZDX5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937534   ⟸   XM_039081606
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038937535   ⟸   XM_039081607
- Peptide Label: isoform X4
Protein Domains
Sema

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZDX5-F1-model_v2 AlphaFold D3ZDX5 1-2121 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310564 AgrOrtholog
BioCyc Gene G2FUF-29090 BioCyc
Ensembl Genes ENSRNOG00000029510 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000048230 ENTREZGENE
  ENSRNOP00000048230.3 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043345 ENTREZGENE
  ENSRNOT00000043345.6 UniProtKB/TrEMBL
Gene3D-CATH 1.10.506.10 UniProtKB/TrEMBL
  2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  Ig_E-set UniProtKB/TrEMBL
  IPT_TIG_rcpt UniProtKB/TrEMBL
  Plexin UniProtKB/TrEMBL
  Plexin-like_fold UniProtKB/TrEMBL
  Plexin_cytoplasmic_RasGAP_dom UniProtKB/TrEMBL
  Plexin_repeat UniProtKB/TrEMBL
  Rho_GTPase_activation_prot UniProtKB/TrEMBL
  Semap_dom_sf UniProtKB/TrEMBL
  Semaphorin/CD100_Ag UniProtKB/TrEMBL
  TIG1_plexin UniProtKB/TrEMBL
  TIG2_plexin UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
NCBI Gene 316009 ENTREZGENE
PANTHER PTHR22625 UniProtKB/TrEMBL
Pfam Plexin_cytopl UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
  TIG UniProtKB/TrEMBL
  TIG_2 UniProtKB/TrEMBL
  TIG_plexin UniProtKB/TrEMBL
PhenoGen Plxnb1 PhenoGen
PROSITE SEMA UniProtKB/TrEMBL
SMART IPT UniProtKB/TrEMBL
  PSI UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
Superfamily-SCOP Ig_E-set UniProtKB/TrEMBL
  Rho_GAP UniProtKB/TrEMBL
  Sema UniProtKB/TrEMBL
UniProt D3ZDX5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Plxnb1  plexin B1  LOC102555419  uncharacterized LOC102555419  Data Merged 737654 PROVISIONAL
2013-12-18 LOC102555419  uncharacterized LOC102555419      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-04-30 Plxnb1  plexin B1   Plxnb1_predicted  plexin B1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Plxnb1_predicted  plexin B1 (predicted)      Symbol and Name status set to approved 70820 APPROVED