Neil3 (nei-like DNA glycosylase 3) - Rat Genome Database

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Gene: Neil3 (nei-like DNA glycosylase 3) Rattus norvegicus
Analyze
Symbol: Neil3
Name: nei-like DNA glycosylase 3
RGD ID: 1310562
Description: Predicted to enable DNA binding activity and catalytic activity, acting on DNA. Predicted to be involved in base-excision repair. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human NEIL3 (nei like DNA glycosylase 3); PARTICIPATES IN base excision repair pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: endonuclease 8-like 3; endonuclease VIII-like 3; LOC290729; nei endonuclease VIII-like 3; nei endonuclease VIII-like 3 (E. coli); nei like 3; nei like 3 (E. coli) ; RGD1310562; similar to putative DNA glycosylase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81645,091,401 - 45,151,419 (+)NCBIGRCr8
mRatBN7.21638,359,305 - 38,418,528 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1638,359,371 - 38,418,527 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1643,706,773 - 43,765,823 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01647,067,373 - 47,126,419 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01642,424,712 - 42,483,736 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01641,079,444 - 41,138,505 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1641,079,444 - 41,138,505 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01640,809,785 - 40,908,566 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41641,232,815 - 41,296,032 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11641,232,999 - 41,296,066 (+)NCBI
Celera1636,461,541 - 36,520,332 (+)NCBICelera
Cytogenetic Map16p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2-palmitoylglycerol  (ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
deguelin  (ISO)
diallyl trisulfide  (ISO)
dioxygen  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
fonofos  (ISO)
glyphosate  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
lidocaine  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
Monobutylphthalate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-Nitrosopyrrolidine  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP,ISO)
PCB138  (ISO)
picoxystrobin  (ISO)
potassium chromate  (ISO)
propanal  (ISO)
quinolin-8-ol  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tributylstannane  (EXP)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive Molecular Analyses of a Macrophage-Related Gene Signature With Regard to Prognosis, Immune Features, and Biomarkers for Immunotherapy in Hepatocellular Carcinoma Based on WGCNA and the LASSO Algorithm. Wang T, etal., Front Immunol. 2022 May 27;13:843408. doi: 10.3389/fimmu.2022.843408. eCollection 2022.
Additional References at PubMed
PMID:12433996   PMID:16428305   PMID:19170771   PMID:20185759   PMID:22564741   PMID:23755964  


Genomics

Comparative Map Data
Neil3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81645,091,401 - 45,151,419 (+)NCBIGRCr8
mRatBN7.21638,359,305 - 38,418,528 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1638,359,371 - 38,418,527 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1643,706,773 - 43,765,823 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01647,067,373 - 47,126,419 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01642,424,712 - 42,483,736 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01641,079,444 - 41,138,505 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1641,079,444 - 41,138,505 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01640,809,785 - 40,908,566 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41641,232,815 - 41,296,032 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11641,232,999 - 41,296,066 (+)NCBI
Celera1636,461,541 - 36,520,332 (+)NCBICelera
Cytogenetic Map16p11NCBI
NEIL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384177,309,874 - 177,371,268 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4177,309,874 - 177,362,936 (+)EnsemblGRCh38hg38GRCh38
GRCh374178,231,028 - 178,284,090 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364178,467,985 - 178,521,086 (+)NCBINCBI36Build 36hg18NCBI36
Build 344178,606,176 - 178,659,149NCBI
Celera4175,558,124 - 175,611,235 (+)NCBICelera
Cytogenetic Map4q34.3NCBI
HuRef4173,981,363 - 174,034,490 (+)NCBIHuRef
CHM1_14178,207,145 - 178,260,553 (+)NCBICHM1_1
T2T-CHM13v2.04180,648,665 - 180,701,747 (+)NCBIT2T-CHM13v2.0
Neil3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39854,039,902 - 54,092,100 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl854,039,902 - 54,092,100 (-)EnsemblGRCm39 Ensembl
GRCm38853,586,867 - 53,639,065 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl853,586,867 - 53,639,065 (-)EnsemblGRCm38mm10GRCm38
MGSCv37854,672,221 - 54,724,419 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36855,085,565 - 55,137,693 (-)NCBIMGSCv36mm8
Celera856,300,317 - 56,352,663 (-)NCBICelera
Cytogenetic Map8B1.3NCBI
cM Map829.14NCBI
Neil3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540330,549,740 - 30,591,821 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540330,549,779 - 30,591,757 (-)NCBIChiLan1.0ChiLan1.0
NEIL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23175,056,238 - 175,109,146 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14175,420,093 - 175,472,838 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04169,503,942 - 169,556,654 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14181,738,838 - 181,791,757 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4181,738,803 - 181,795,082 (+)Ensemblpanpan1.1panPan2
NEIL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11652,383,585 - 52,472,398 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1652,387,389 - 52,436,173 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1647,883,197 - 47,966,699 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01654,692,820 - 54,776,914 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1654,698,978 - 54,746,494 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11652,588,158 - 52,672,461 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01653,183,765 - 53,268,294 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01653,420,999 - 53,505,487 (-)NCBIUU_Cfam_GSD_1.0
Neil3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494327,324,857 - 27,402,022 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365167,739,157 - 7,782,024 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365167,739,191 - 7,781,735 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEIL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1539,581,856 - 39,632,308 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11539,416,073 - 39,632,313 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21545,454,240 - 45,542,560 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NEIL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17123,408,582 - 123,462,475 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7123,409,363 - 123,462,411 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037103,527,385 - 103,579,971 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Neil3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247698,448,226 - 8,480,439 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247698,436,526 - 8,480,336 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Neil3
357 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:86
Count of miRNA genes:72
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000015623
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760943025077Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor depth of invasion (CMO:0001888)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161769679182635055Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)161900443575226532Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162173597566735975Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)162432551369325513Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)162515279370152793Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)163195152060148445Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)163528887080288870Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)163775215682752156Rat
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)163775215682752156Rat

Markers in Region
AU047451  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21638,365,495 - 38,365,665 (+)MAPPERmRatBN7.2
Rnor_6.01641,085,635 - 41,085,804NCBIRnor6.0
Rnor_5.01640,855,482 - 40,855,651UniSTSRnor5.0
RGSC_v3.41641,239,006 - 41,239,175UniSTSRGSC3.4
Celera1636,467,732 - 36,467,894UniSTS
Cytogenetic Map16p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 3 29 37 27 18 27 2 2 55 22 39 7 2
Below cutoff 8 10 6 1 6 3 4 16 11 2 4 3

Sequence


RefSeq Acc Id: ENSRNOT00000015623   ⟹   ENSRNOP00000015623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1638,359,371 - 38,418,527 (+)Ensembl
Rnor_6.0 Ensembl1641,079,444 - 41,138,505 (+)Ensembl
RefSeq Acc Id: NM_001170346   ⟹   NP_001163817
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81645,092,200 - 45,151,205 (+)NCBI
mRatBN7.21638,359,305 - 38,418,314 (+)NCBI
Rnor_6.01641,079,444 - 41,138,505 (+)NCBI
Rnor_5.01640,809,785 - 40,908,566 (+)NCBI
RGSC_v3.41641,232,815 - 41,296,032 (+)RGD
Celera1636,461,541 - 36,520,332 (+)RGD
Sequence:
RefSeq Acc Id: XR_005494578
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81645,092,200 - 45,151,419 (+)NCBI
mRatBN7.21638,359,307 - 38,418,528 (+)NCBI
RefSeq Acc Id: XR_005494579
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81645,092,200 - 45,151,419 (+)NCBI
mRatBN7.21638,359,307 - 38,418,528 (+)NCBI
RefSeq Acc Id: XR_005494580
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81645,092,225 - 45,151,419 (+)NCBI
mRatBN7.21638,359,307 - 38,418,528 (+)NCBI
RefSeq Acc Id: XR_010058285
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81645,091,401 - 45,151,419 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001163817 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL78941 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015623
  ENSRNOP00000015623.6
RefSeq Acc Id: NP_001163817   ⟸   NM_001170346
- UniProtKB: D3ZKJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000015623   ⟸   ENSRNOT00000015623
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZKJ8-F1-model_v2 AlphaFold D3ZKJ8 1-606 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700084
Promoter ID:EPDNEW_R10608
Type:initiation region
Name:Neil3_1
Description:nei-like DNA glycosylase 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01641,079,475 - 41,079,535EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310562 AgrOrtholog
BioCyc Gene G2FUF-11455 BioCyc
Ensembl Genes ENSRNOG00000011688 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015623 ENTREZGENE
  ENSRNOT00000015623.7 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.50 UniProtKB/TrEMBL
  3.20.190.10 UniProtKB/TrEMBL
  Zn-finger domain of Sec23/24 UniProtKB/TrEMBL
InterPro DNA_glyclase/AP_lyase_DNA-bd UniProtKB/TrEMBL
  DNA_glyclase/AP_lyase_Znf_dom UniProtKB/TrEMBL
  DNA_glyclase_Znf_dom_DNA_BS UniProtKB/TrEMBL
  DNA_glycosylase/AP_lyase_cat UniProtKB/TrEMBL
  MutM-like_N-ter UniProtKB/TrEMBL
  Ribosomal_S13-like_H2TH UniProtKB/TrEMBL
  Znf_GRF UniProtKB/TrEMBL
  Znf_RanBP2 UniProtKB/TrEMBL
  Znf_RanBP2_sf UniProtKB/TrEMBL
NCBI Gene 290729 ENTREZGENE
PANTHER ENDONUCLEASE 8-LIKE 3 UniProtKB/TrEMBL
  FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE UniProtKB/TrEMBL
Pfam H2TH UniProtKB/TrEMBL
  zf-GRF UniProtKB/TrEMBL
  zf-RanBP UniProtKB/TrEMBL
PhenoGen Neil3 PhenoGen
PROSITE FPG_CAT UniProtKB/TrEMBL
  ZF_FPG_1 UniProtKB/TrEMBL
  ZF_FPG_2 UniProtKB/TrEMBL
  ZF_GRF UniProtKB/TrEMBL
  ZF_RANBP2_1 UniProtKB/TrEMBL
  ZF_RANBP2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011688 RatGTEx
SMART H2TH UniProtKB/TrEMBL
  ZnF_RBZ UniProtKB/TrEMBL
Superfamily-SCOP Form_DNAglyc_cat UniProtKB/TrEMBL
  Ribosomal_H2TH UniProtKB/TrEMBL
  SSF90209 UniProtKB/TrEMBL
UniProt D3ZKJ8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-01 Neil3  nei-like DNA glycosylase 3  Neil3  nei endonuclease VIII-like 3 (E. coli)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Neil3  nei endonuclease VIII-like 3 (E. coli)  Neil3  nei like 3 (E. coli)   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Neil3  nei like 3 (E. coli)   Neil3_predicted  nei like 3 (E. coli) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Neil3_predicted  nei like 3 (E. coli) (predicted)  RGD1310562_predicted  similar to putative DNA glycosylase (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1310562_predicted  similar to putative DNA glycosylase (predicted)  LOC290729_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC290729_predicted  similar to putative DNA glycosylase (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL